vOTU-017696

Overview

vOTU representative UHGV-0211905

No. of genomes 6

Genome length 31,880 bps

Completeness 64.87% (medium-quality)

Host Ruminococcus C sp000437175

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-017696
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-07450 › vOTU-017696
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruminococcus C › Ruminococcus C sp000437175
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0211905
BioSample	NA
Genome length	31,880 bps
CheckV completeness	64.87% (medium-quality)
CheckV contamination	0.00%
CDS count	43
CDS density	91.46%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0211905_1	KOfam	K06333	cotJB; spore coat protein JB	NA
UHGV-0211905_1	PHROG	phrog_34474	NA	unknown function
UHGV-0211905_1	UniRef90	UniRef90_UPI000AB9F817	spore coat protein CotJB	NA
UHGV-0211905_1	eggNOG-mapper	411473.RUMCAL_01574	CotJB protein	NA
UHGV-0211905_1	Pfam	PF12652	CotJB protein	CotJB
UHGV-0211905_2	PHROG	phrog_37652	NA	unknown function
UHGV-0211905_2	UniRef90	UniRef90_UPI00195DBE60	HNH endonuclease	NA
UHGV-0211905_2	eggNOG-mapper	693661.Arcve_0884	COG1403 Restriction endonuclease	NA
UHGV-0211905_2	PADLOC	SAVED1--SAVED_HNH_MK_CARF_00012017	NA	CRISPR-CAS
UHGV-0211905_2	Pfam	PF13391	HNH endonuclease	HNH_2
UHGV-0211905_2	Pfam	PF20275	C-terminal domain 10 of the ABC-three component (ABC-3C) systems	CTD10
UHGV-0211905_2	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0211905_3	eggNOG-mapper	1535287.JP74_10760	NA	NA
UHGV-0211905_3	Pfam	PF20293	ABC-three component (ABC-3C) system Middle Component 6	MC6
UHGV-0211905_4	PHROG	phrog_5467	NA	unknown function
UHGV-0211905_4	UniRef90	UniRef90_A0A2V2DL48	NA	NA
UHGV-0211905_4	eggNOG-mapper	693661.Arcve_0882	Part of the Rad50 Mre11 complex, which is involved in the early steps of DNA double-strand break (DSB) repair. The complex may facilitate opening of the processed DNA ends to aid in the recruitment of HerA and NurA. Rad50 controls the balance between DNA end bridging and DNA resection via ATP-dependent structural rearrangements of the Rad50 Mre11 complex	NA
UHGV-0211905_4	Pfam	PF10088	NA	DUF2326
UHGV-0211905_4	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-0211905_5	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0211905_5	PHROG	phrog_1794	amidase	lysis
UHGV-0211905_5	UniRef90	UniRef90_A0A374VU40	N-acetylmuramoyl-L-alanine amidase domain-containing protein	NA
UHGV-0211905_5	eggNOG-mapper	411473.RUMCAL_00096	Ami_2	NA
UHGV-0211905_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0211905_5	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-0211905_5	Structural annotation	PF01510, PF20780, MF_04111, NF008758, COG5632	NA	NA
UHGV-0211905_6	PHROG	phrog_443	holin	lysis
UHGV-0211905_6	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-0211905_6	eggNOG-mapper	1163671.JAGI01000002_gene1943	Putative lactococcus lactis phage r1t holin	NA
UHGV-0211905_6	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0211905_6	Structural annotation	PF16945	NA	NA
UHGV-0211905_8	Structural annotation	PF11195	NA	NA
UHGV-0211905_9	PHROG	phrog_35590	NA	unknown function
UHGV-0211905_9	eggNOG-mapper	411473.RUMCAL_00613	Collagen triple helix repeat (20 copies)	NA
UHGV-0211905_9	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-0211905_9	Structural annotation	PF07675, NF038128	NA	NA
UHGV-0211905_10	KOfam	K16630	COL22A; collagen type XXII alpha	NA
UHGV-0211905_10	PHROG	phrog_25979	NA	unknown function
UHGV-0211905_10	UniRef90	UniRef90_U2K692	Putative collagen triple helix repeat protein (Fragment)	NA
UHGV-0211905_10	eggNOG-mapper	411473.RUMCAL_02115	Collagen triple helix repeat (20 copies)	NA
UHGV-0211905_10	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0211905_10	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0211905_10	Structural annotation	PF09294	NA	NA
UHGV-0211905_11	PHROG	phrog_18805	NA	unknown function
UHGV-0211905_11	UniRef90	UniRef90_A0A374VRM9	Leucine-rich repeat domain-containing protein	NA
UHGV-0211905_11	eggNOG-mapper	1341157.RF007C_02575	Leucine rich repeats (6 copies)	NA
UHGV-0211905_11	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-0211905_11	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-0211905_11	Structural annotation	PF13306, PF20747	NA	NA
UHGV-0211905_12	PHROG	phrog_538	minor tail protein	tail
UHGV-0211905_12	UniRef90	UniRef90_UPI00048AB2A8	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0211905_12	eggNOG-mapper	1410670.JHXF01000015_gene2304	NA	NA
UHGV-0211905_12	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0211905_12	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-0211905_13	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0211905_13	UniRef90	UniRef90_UPI00048B74EB	phage tail family protein	NA
UHGV-0211905_13	eggNOG-mapper	1410670.JHXF01000015_gene2303	Phage tail protein	NA
UHGV-0211905_13	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0211905_13	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0211905_15	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0211905_15	eggNOG-mapper	397288.C806_00771	Phage-related minor tail protein	NA
UHGV-0211905_15	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0211905_15	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0211905_15	COG	COG5283	Phage-related tail protein	NA
UHGV-0211905_15	Structural annotation	PF10145, PF16454, TIGR01760, COG5280	NA	NA
UHGV-0211905_16	PHROG	phrog_3033	NA	unknown function
UHGV-0211905_16	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0211905_16	eggNOG-mapper	1118057.CAGX01000043_gene482	NA	NA
UHGV-0211905_17	PHROG	phrog_709	NA	unknown function
UHGV-0211905_17	eggNOG-mapper	411473.RUMCAL_02816	NA	NA
UHGV-0211905_17	Structural annotation	PF11836	NA	NA
UHGV-0211905_18	PHROG	phrog_88	major tail protein	tail
UHGV-0211905_18	UniRef90	UniRef90_R5V6C6	Phi13 family Major tail protein	NA
UHGV-0211905_18	eggNOG-mapper	1384066.JAGT01000001_gene932	phage major tail protein, phi13 family	NA
UHGV-0211905_18	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0211905_18	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0211905_19	PHROG	phrog_78	tail terminator	connector
UHGV-0211905_19	UniRef90	UniRef90_A0A2X2WS24	Phage-like protein	NA
UHGV-0211905_19	eggNOG-mapper	411473.RUMCAL_01153	NA	NA
UHGV-0211905_19	Structural annotation	PF20765	NA	NA
UHGV-0211905_20	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0211905_20	UniRef90	UniRef90_U2KW23	Phage protein, HK97 gp10 family	NA
UHGV-0211905_20	eggNOG-mapper	411473.RUMCAL_01154	NA	NA
UHGV-0211905_20	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0211905_20	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0211905_21	PHROG	phrog_25	head closure Hc1	connector
UHGV-0211905_21	UniRef90	UniRef90_UPI001D0159A2	phage head closure protein	NA
UHGV-0211905_21	eggNOG-mapper	411473.RUMCAL_01621	Phage head-tail joining protein	NA
UHGV-0211905_21	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0211905_21	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0211905_21	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0211905_21	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0211905_22	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0211905_22	UniRef90	UniRef90_UPI001D006151	head-tail connector protein	NA
UHGV-0211905_22	eggNOG-mapper	1341157.RF007C_02635	Phage DNA packaging protein	NA
UHGV-0211905_22	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0211905_22	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0211905_22	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0211905_23	PHROG	phrog_10	major head protein	head and packaging
UHGV-0211905_23	UniRef90	UniRef90_A0A1K1YL69	Phage major capsid protein, HK97 family	NA
UHGV-0211905_23	eggNOG-mapper	1384066.JAGT01000001_gene937	Phage major capsid protein, HK97 family	NA
UHGV-0211905_23	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0211905_23	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0211905_23	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0211905_23	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0211905_24	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0211905_24	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0211905_24	UniRef90	UniRef90_A0A374VMC8	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0211905_24	eggNOG-mapper	641112.ACOK01000108_gene1798	Belongs to the peptidase S14 family	NA
UHGV-0211905_24	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0211905_24	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0211905_24	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-0211905_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0211905_25	UniRef90	UniRef90_A0A1K1YMT8	Phage portal protein, HK97 family	NA
UHGV-0211905_25	eggNOG-mapper	1384066.JAGT01000001_gene939	Phage portal protein, HK97 family	NA
UHGV-0211905_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0211905_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0211905_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0211905_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0211905_26	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0211905_26	UniRef90	UniRef90_A0A0Z8KMR6	Terminase large subunit	NA
UHGV-0211905_26	eggNOG-mapper	1214217.ALNF01000017_gene207	Terminase	NA
UHGV-0211905_26	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0211905_26	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0211905_26	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0211905_26	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0211905_27	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0211905_27	UniRef90	UniRef90_B5CRY1	Phage terminase, small subunit, P27 family	NA
UHGV-0211905_27	eggNOG-mapper	1235802.C823_01509	Phage terminase, small subunit	NA
UHGV-0211905_27	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0211905_27	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0211905_27	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0211905_27	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0211905_28	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0211905_28	UniRef90	UniRef90_UPI001D017002	NA	NA
UHGV-0211905_28	Pfam	PF08281	Sigma-70, region 4	Sigma70_r4_2
UHGV-0211905_28	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0211905_28	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-0211905_29	UniRef90	UniRef90_R7GTI6	Addiction module antitoxin RelB/DinJ family	NA
UHGV-0211905_29	COG	COG3077	Antitoxin component of the RelBE or YafQ-DinJ toxin-antitoxin module	NA
UHGV-0211905_30	KOfam	K19157	yafQ; mRNA interferase YafQ [EC:3.1.-.-]	NA
UHGV-0211905_30	PHROG	phrog_7251	RelE-like toxin	moron, auxiliary metabolic gene and host takeover
UHGV-0211905_30	UniRef90	UniRef90_A0A3C0II46	Type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0211905_30	eggNOG-mapper	1260356.D920_00203	Bacterial toxin of type II toxin-antitoxin system, YafQ	NA
UHGV-0211905_30	Pfam	PF15738	Bacterial toxin of type II toxin-antitoxin system, YafQ	YafQ_toxin
UHGV-0211905_30	NCBIFam	TIGR02385.1	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA
UHGV-0211905_30	COG	COG3041	mRNA-degrading endonuclease YafQ (mRNA interferase), toxin component of the YafQ-DinJ toxin-antitoxin module	NA
UHGV-0211905_30	Structural annotation	PF15738, TIGR00053, COG3041	NA	NA
UHGV-0211905_31	PHROG	phrog_5702	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0211905_31	UniRef90	UniRef90_UPI000A4B1865	VRR-NUC domain-containing protein	NA
UHGV-0211905_31	eggNOG-mapper	1410670.JHXF01000015_gene2271	VRR_NUC	NA
UHGV-0211905_31	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0211905_31	Structural annotation	PF03838, MF_00130, NF002585, COG3331	NA	NA
UHGV-0211905_32	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0211905_32	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0211905_32	UniRef90	UniRef90_A0A356CZA9	Helicase	NA
UHGV-0211905_32	eggNOG-mapper	1410670.JHXF01000015_gene2270	helicase	NA
UHGV-0211905_32	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0211905_32	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0211905_32	Pfam	PF18766	SWI2/SNF2 ATPase	SWI2_SNF2
UHGV-0211905_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0211905_32	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0211905_32	Structural annotation	PF04851, PF00271, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0211905_34	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0211905_34	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0211905_34	UniRef90	UniRef90_R6P3P1	SF4 helicase domain-containing protein	NA
UHGV-0211905_34	eggNOG-mapper	476272.RUMHYD_02834	NA	NA
UHGV-0211905_34	Pfam	PF13481	AAA domain	AAA_25
UHGV-0211905_34	COG	COG0305	Replicative DNA helicase	NA
UHGV-0211905_34	Structural annotation	PF03796, PF19898, MF_04154, TIGR03877, TIGR01391, COG0467, COG0358	NA	NA
UHGV-0211905_35	PHROG	phrog_16304	NA	unknown function
UHGV-0211905_35	UniRef90	UniRef90_R7FEB6	NA	NA
UHGV-0211905_35	eggNOG-mapper	1105031.HMPREF1141_0552	NA	NA
UHGV-0211905_35	Pfam	PF19808	NA	DUF6291
UHGV-0211905_35	Structural annotation	PF19808	NA	NA
UHGV-0211905_36	PHROG	phrog_18107	NA	unknown function
UHGV-0211905_36	UniRef90	UniRef90_R7F806	PF05037 family protein	NA
UHGV-0211905_36	eggNOG-mapper	476272.RUMHYD_02831	NA	NA
UHGV-0211905_37	PHROG	phrog_2872	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0211905_37	UniRef90	UniRef90_A0A843H8D6	ATP-binding protein	NA
UHGV-0211905_37	eggNOG-mapper	1345695.CLSA_c30180	AAA domain	NA
UHGV-0211905_37	Pfam	PF13479	AAA domain	AAA_24
UHGV-0211905_37	Structural annotation	PF13479, MF_00350, TIGR01618, COG0468	NA	NA
UHGV-0211905_42	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0211905_42	UniRef90	UniRef90_A0A356CZA0	Oxidoreductase	NA
UHGV-0211905_42	eggNOG-mapper	1232449.BAHV02000010_gene2739	BRO family, N-terminal domain	NA
UHGV-0211905_42	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0211905_42	COG	COG3617	Prophage antirepressor	NA
UHGV-0211905_42	Structural annotation	PF03374, COG3645	NA	NA
UHGV-0211905_43	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0211905_43	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0211905_43	UniRef90	UniRef90_A0A1G5EI80	Phage anti-repressor protein	NA
UHGV-0211905_43	eggNOG-mapper	445971.ANASTE_00706	AntA/AntB antirepressor	NA
UHGV-0211905_43	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0211905_43	COG	COG3561	Phage anti-repressor protein Ant	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0211905	Yes	31,880 bps	52.08%	64.87%	0.9768
UHGV-2034239	No	23,979 bps	48.02%	44.78%	0.9577
UHGV-2161837	No	17,929 bps	50.55%	36.16%	0.9813
UHGV-1910264	No	14,695 bps	49.45%	33.23%	0.9805
UHGV-1585960	No	11,779 bps	55.41%	26.05%	0.9720
UHGV-1944814	No	10,554 bps	56.04%	23.33%	0.9773