vOTU-017700

Overview

vOTU representative UHGV-1945699

No. of genomes 6

Genome length 46,051 bps

Completeness 86.15% (medium-quality)

Host Ruthenibacterium lactatiformans

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-017700
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-03616 › vOTU-017700
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruthenibacterium › Ruthenibacterium lactatiformans
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1945699
BioSample	NA
Genome length	46,051 bps
CheckV completeness	86.15% (medium-quality)
CheckV contamination	0.00%
CDS count	58
CDS density	92.46%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1945699_1	KOfam	K10947	padR; PadR family transcriptional regulator, regulatory protein PadR	NA
UHGV-1945699_1	UniRef90	UniRef90_A0A6I3R2G4	PadR family transcriptional regulator	NA
UHGV-1945699_1	eggNOG-mapper	665956.HMPREF1032_01906	Transcriptional regulator PadR-like family	NA
UHGV-1945699_1	Pfam	PF03551	Transcriptional regulator PadR-like family	PadR
UHGV-1945699_1	COG	COG1695	DNA-binding transcriptional regulator, PadR family	NA
UHGV-1945699_3	eggNOG-mapper	397290.C810_03178	NA	NA
UHGV-1945699_4	UniRef90	UniRef90_UPI00186890FE	plasmid recombination protein	NA
UHGV-1945699_4	eggNOG-mapper	665956.HMPREF1032_01908	Plasmid recombination enzyme	NA
UHGV-1945699_4	Pfam	PF01076	Plasmid recombination enzyme	Mob_Pre
UHGV-1945699_4	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1945699_4	Structural annotation	PF01076, NF041497, NF038178	NA	NA
UHGV-1945699_5	UniRef90	UniRef90_UPI00139E5E2D	NA	NA
UHGV-1945699_5	eggNOG-mapper	665956.HMPREF1032_01909	NA	NA
UHGV-1945699_5	Pfam	PF19553	NA	DUF6076
UHGV-1945699_6	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1945699_6	PHROG	phrog_95	integrase	integration and excision
UHGV-1945699_6	UniRef90	UniRef90_A0A3A6DSL9	Recombinase family protein (Fragment)	NA
UHGV-1945699_6	eggNOG-mapper	663278.Ethha_0939	NA	NA
UHGV-1945699_6	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1945699_6	Pfam	PF07508	Recombinase	Recombinase
UHGV-1945699_6	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1945699_6	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1945699_6	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1945699_7	eggNOG-mapper	411463.EUBVEN_00967	NA	NA
UHGV-1945699_8	UniRef90	UniRef90_UPI001F034565	AbrB/MazE/SpoVT family DNA-binding domain-containing protein	NA
UHGV-1945699_8	eggNOG-mapper	1121342.AUCO01000004_gene606	NA	NA
UHGV-1945699_9	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1945699_9	UniRef90	UniRef90_A0A1V4VGI0	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-1945699_9	eggNOG-mapper	266748.HY04_03845	TaqI-like C-terminal specificity domain	NA
UHGV-1945699_9	PADLOC	MTase_II_00121	Type II methyltransferase	RM
UHGV-1945699_9	Pfam	PF07669	Eco57I restriction-modification methylase	Eco57I
UHGV-1945699_9	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1945699_10	KOfam	K24451	zim; modification methylase	NA
UHGV-1945699_10	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1945699_10	UniRef90	UniRef90_A0A1V4VI75	Methyltransferase	NA
UHGV-1945699_10	eggNOG-mapper	420662.Mpe_A2383	DNA methylase	NA
UHGV-1945699_10	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-1945699_10	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1945699_10	COG	COG0863	DNA modification methylase	NA
UHGV-1945699_11	UniRef90	UniRef90_A0A373S8T1	PLDc_2 domain-containing protein	NA
UHGV-1945699_11	eggNOG-mapper	1147128.BAST_1484	PLD-like domain	NA
UHGV-1945699_11	COG	COG3886	HKD family nuclease	NA
UHGV-1945699_12	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1945699_12	PHROG	phrog_95	integrase	integration and excision
UHGV-1945699_12	UniRef90	UniRef90_A0A3A6JR24	Recombinase family protein	NA
UHGV-1945699_12	eggNOG-mapper	665956.HMPREF1032_03589	NA	NA
UHGV-1945699_12	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1945699_12	Pfam	PF07508	Recombinase	Recombinase
UHGV-1945699_12	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1945699_12	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1945699_12	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-1945699_13	KOfam	K03466	ftsK, spoIIIE; DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family	NA
UHGV-1945699_13	PHROG	phrog_1358	FtsK/SpoIIIE-like protein	moron, auxiliary metabolic gene and host takeover
UHGV-1945699_13	UniRef90	UniRef90_A0A3A6JY26	NA	NA
UHGV-1945699_13	eggNOG-mapper	665956.HMPREF1032_00984	Belongs to the FtsK SpoIIIE SftA family	NA
UHGV-1945699_13	PADLOC	SspH_00004	SspH	SSP
UHGV-1945699_13	Pfam	PF01580	FtsK/SpoIIIE family	FtsK_SpoIIIE
UHGV-1945699_13	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-1945699_13	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-1945699_13	COG	COG1674	DNA segregation ATPase FtsK/SpoIIIE or related protein	NA
UHGV-1945699_14	PHROG	phrog_1914	NA	unknown function
UHGV-1945699_14	UniRef90	UniRef90_G9RRJ0	Peptidase_M78 domain-containing protein	NA
UHGV-1945699_14	eggNOG-mapper	665956.HMPREF1032_03592	NA	NA
UHGV-1945699_14	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1945699_14	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1945699_14	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1945699_15	UniRef90	UniRef90_A0A3A6JSY4	XRE family transcriptional regulator	NA
UHGV-1945699_15	eggNOG-mapper	394503.Ccel_3076	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1945699_15	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1945699_15	Structural annotation	PF13560, MF_00535, NF007257, COG1396	NA	NA
UHGV-1945699_16	PHROG	phrog_66	excisionase and transcriptional regulator	integration and excision
UHGV-1945699_16	UniRef90	UniRef90_G9RRJ1	Excisionase family DNA binding domain-containing protein	NA
UHGV-1945699_16	eggNOG-mapper	1218173.BALCAV_0221205	Helix-turn-helix domain	NA
UHGV-1945699_16	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1945699_16	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1945699_20	PHROG	phrog_1733	NA	unknown function
UHGV-1945699_20	UniRef90	UniRef90_UPI001967A828	cell envelope integrity protein TolA	NA
UHGV-1945699_20	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-1945699_20	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-1945699_20	Structural annotation	PF03677	NA	NA
UHGV-1945699_22	KOfam	K19171	dndD; DNA sulfur modification protein DndD	NA
UHGV-1945699_22	PHROG	phrog_77	SbcC-like subunit of palindrome specific endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1945699_22	UniRef90	UniRef90_G9RRJ7	AAA_23 domain-containing protein	NA
UHGV-1945699_22	eggNOG-mapper	665956.HMPREF1032_03599	nuclear chromosome segregation	NA
UHGV-1945699_22	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1945699_22	Structural annotation	PF02463, MF_00449, NF041034, COG0419	NA	NA
UHGV-1945699_23	PHROG	phrog_2185	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1945699_23	UniRef90	UniRef90_A0A4R1QSH1	RecT family protein	NA
UHGV-1945699_23	eggNOG-mapper	665956.HMPREF1032_03600	NA	NA
UHGV-1945699_24	KOfam	K06167	phnP; phosphoribosyl 1,2-cyclic phosphate phosphodiesterase [EC:3.1.4.55]	NA
UHGV-1945699_24	PHROG	phrog_392	metal-dependent hydrolase	other
UHGV-1945699_24	UniRef90	UniRef90_G9RRJ9	Lactamase_B domain-containing protein	NA
UHGV-1945699_24	eggNOG-mapper	665956.HMPREF1032_03601	Metallo-beta-lactamase superfamily	NA
UHGV-1945699_24	Pfam	PF12706	Beta-lactamase superfamily domain	Lactamase_B_2
UHGV-1945699_24	COG	COG1235	Phosphoribosyl 1,2-cyclic phosphate phosphodiesterase	NA
UHGV-1945699_24	Structural annotation	PF02112, MF_01818, NF041851, COG1234	NA	NA
UHGV-1945699_25	PHROG	phrog_36563	NA	unknown function
UHGV-1945699_25	eggNOG-mapper	665956.HMPREF1032_03602	NA	NA
UHGV-1945699_26	UniRef90	UniRef90_G9RRK1	NA	NA
UHGV-1945699_26	Pfam	PF19808	NA	DUF6291
UHGV-1945699_26	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1945699_27	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1945699_27	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1945699_27	UniRef90	UniRef90_A0A0N9ZSQ9	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1945699_27	eggNOG-mapper	665956.HMPREF1032_03604	Endodeoxyribonuclease RusA	NA
UHGV-1945699_27	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1945699_27	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1945699_27	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1945699_29	eggNOG-mapper	665956.HMPREF1032_03084	NA	NA
UHGV-1945699_33	UniRef90	UniRef90_UPI0019673783	helix-turn-helix domain-containing protein	NA
UHGV-1945699_34	Structural annotation	PF04545	NA	NA
UHGV-1945699_35	PHROG	phrog_338	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1945699_35	UniRef90	UniRef90_UPI0015F33F36	HNH endonuclease	NA
UHGV-1945699_35	eggNOG-mapper	748224.HMPREF9436_01465	NA	NA
UHGV-1945699_35	Structural annotation	PF01844	NA	NA
UHGV-1945699_36	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1945699_36	UniRef90	UniRef90_UPI001F1A3C47	terminase large subunit	NA
UHGV-1945699_36	eggNOG-mapper	748224.HMPREF9436_01467	phage terminase, large subunit	NA
UHGV-1945699_36	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1945699_36	Structural annotation	PF20441, PF03354, MF_04146, NF033889, COG4626	NA	NA
UHGV-1945699_37	PHROG	phrog_104	portal protein	head and packaging
UHGV-1945699_37	UniRef90	UniRef90_A0A316PMS0	Phage portal protein	NA
UHGV-1945699_37	eggNOG-mapper	748224.HMPREF9436_01468	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1945699_37	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1945699_38	PHROG	phrog_193	head maturation protease	head and packaging
UHGV-1945699_38	UniRef90	UniRef90_A0A6N8H118	CdiA_C domain-containing protein	NA
UHGV-1945699_38	eggNOG-mapper	748224.HMPREF9436_01469	NA	NA
UHGV-1945699_38	COG	COG5529	Phage-encoded DNA-binding protein ECs1768, contains HTH and DnaT DNA-binding domains	NA
UHGV-1945699_39	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1945699_39	UniRef90	UniRef90_UPI00195B7610	phage scaffolding protein	NA
UHGV-1945699_39	eggNOG-mapper	663278.Ethha_0497	NA	NA
UHGV-1945699_39	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1945699_39	Structural annotation	PF06810	NA	NA
UHGV-1945699_40	PHROG	phrog_10	major head protein	head and packaging
UHGV-1945699_40	UniRef90	UniRef90_A0A1Y4TJU9	Phage major capsid protein	NA
UHGV-1945699_40	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-1945699_40	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1945699_40	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1945699_40	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1945699_40	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1945699_42	UniRef90	UniRef90_E2ZGA8	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1945699_42	Structural annotation	PF09355	NA	NA
UHGV-1945699_43	PHROG	phrog_501	head closure Hc1	connector
UHGV-1945699_43	eggNOG-mapper	748224.HMPREF9436_00693	NA	NA
UHGV-1945699_43	Structural annotation	PF12206, COG5614	NA	NA
UHGV-1945699_44	PHROG	phrog_387	neck protein	connector
UHGV-1945699_44	UniRef90	UniRef90_A0A380KNT4	NA	NA
UHGV-1945699_44	eggNOG-mapper	663952.SDD27957_07245	NA	NA
UHGV-1945699_45	PHROG	phrog_123	tail terminator	connector
UHGV-1945699_45	UniRef90	UniRef90_F3MWA9	NA	NA
UHGV-1945699_45	eggNOG-mapper	1280698.AUJS01000007_gene1043	NA	NA
UHGV-1945699_45	Structural annotation	PF06141	NA	NA
UHGV-1945699_46	PHROG	phrog_117	major tail protein	tail
UHGV-1945699_46	UniRef90	UniRef90_A0A1Y4TGT6	Phage tail protein	NA
UHGV-1945699_46	eggNOG-mapper	1280698.AUJS01000007_gene1044	domain, Protein	NA
UHGV-1945699_46	COG	COG5492	NA	NA
UHGV-1945699_46	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1945699_47	PHROG	phrog_1526	NA	unknown function
UHGV-1945699_47	eggNOG-mapper	665950.HMPREF1025_02524	NA	NA
UHGV-1945699_48	PHROG	phrog_1633	NA	unknown function
UHGV-1945699_48	UniRef90	UniRef90_UPI001939D555	NA	NA
UHGV-1945699_48	eggNOG-mapper	1321372.AQQB01000060_gene71	NA	NA
UHGV-1945699_48	Pfam	PF17318	NA	DUF5361
UHGV-1945699_48	Structural annotation	PF17318	NA	NA
UHGV-1945699_49	PHROG	phrog_6900	tail length tape measure protein	tail
UHGV-1945699_49	UniRef90	UniRef90_UPI001CC012E9	phage tail protein	NA
UHGV-1945699_49	eggNOG-mapper	1121864.OMO_02161	tape measure	NA
UHGV-1945699_49	COG	COG5412	Phage-related protein	NA
UHGV-1945699_49	Structural annotation	PF20155, MF_04138, COG5281	NA	NA
UHGV-1945699_50	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1945699_50	UniRef90	UniRef90_A0A3A6ECR2	Phage tail family protein	NA
UHGV-1945699_50	eggNOG-mapper	665956.HMPREF1032_02941	Phage tail protein	NA
UHGV-1945699_50	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1945699_51	PHROG	phrog_538	minor tail protein	tail
UHGV-1945699_51	UniRef90	UniRef90_UPI000C7C9115	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-1945699_51	eggNOG-mapper	665956.HMPREF1032_02940	NA	NA
UHGV-1945699_51	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1945699_51	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1945699_52	PHROG	phrog_9534	head protein	head and packaging
UHGV-1945699_52	eggNOG-mapper	665956.HMPREF1032_02939	COG NOG18825 non supervised orthologous group	NA
UHGV-1945699_52	Structural annotation	PF20747	NA	NA
UHGV-1945699_53	eggNOG-mapper	665956.HMPREF1032_02705	NA	NA
UHGV-1945699_55	eggNOG-mapper	1232443.BAIA02000135_gene1409	NA	NA
UHGV-1945699_56	Structural annotation	PF21253, NF038128	NA	NA
UHGV-1945699_57	Structural annotation	PF11514	NA	NA
UHGV-1945699_58	PHROG	phrog_11037	NA	unknown function
UHGV-1945699_58	UniRef90	UniRef90_A0A6I3QQJ9	Peptidoglycan DD-metalloendopeptidase family protein	NA
UHGV-1945699_58	eggNOG-mapper	665956.HMPREF1032_03271	NA	NA
UHGV-1945699_58	Structural annotation	PF01551, NF040883, COG0739	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1945699	Yes	46,051 bps	51.89%	86.15%	0.9703
UHGV-0093153	No	28,946 bps	54.28%	76.22%	0.9788
UHGV-2227184	No	18,651 bps	55.02%	49.06%	0.9802
UHGV-0213454	No	18,282 bps	54.57%	48.08%	0.9812
UHGV-1583029	No	17,967 bps	54.70%	47.25%	0.9808
UHGV-1735192	No	15,312 bps	55.18%	40.28%	0.9823