vOTU-018149

Overview

vOTU representative UHGV-2075680

No. of genomes 6

Genome length 17,702 bps

Completeness 79.83% (medium-quality)

Host Clostridioides difficile

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-018149
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes › Salasmaviridae
Taxonomy (UHGV)	vFAM-00015 › vSUBFAM-06949 › vGENUS-18461 › vOTU-018149
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Peptostreptococcales › Peptostreptococcaceae › Clostridioides › Clostridioides difficile
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2075680
BioSample	NA
Genome length	17,702 bps
CheckV completeness	79.83% (medium-quality)
CheckV contamination	0.00%
CDS count	23
CDS density	92.02%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2075680_4	PHROG	phrog_2234	tail spike protein	tail
UHGV-2075680_4	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-2075680_4	COG	COG5434	Polygalacturonase	NA
UHGV-2075680_5	PHROG	phrog_3225	adaptor Ad4	connector
UHGV-2075680_5	UniRef90	UniRef90_A0A0N7GFF7	Lower collar protein	NA
UHGV-2075680_5	eggNOG-mapper	10756.TUB11_BPPH2	NA	NA
UHGV-2075680_6	PHROG	phrog_2038	upper collar connector	connector
UHGV-2075680_6	UniRef90	UniRef90_A0A345MZG5	Upper collar protein	NA
UHGV-2075680_6	eggNOG-mapper	10756.PORTL_BPPH2	Phage Connector (GP10)	NA
UHGV-2075680_6	Pfam	PF05352	Phage Connector (GP10)	Phage_connector
UHGV-2075680_6	Structural annotation	PF05352, TIGR01538, COG4695	NA	NA
UHGV-2075680_7	PHROG	phrog_2248	tail protein	tail
UHGV-2075680_7	UniRef90	UniRef90_A0A843HUB8	Caud_tail_N domain-containing protein	NA
UHGV-2075680_7	eggNOG-mapper	12345.Q9FZW6_BPGA1	NA	NA
UHGV-2075680_7	Pfam	PF16838	Caudoviral major tail protein N-terminus	Caud_tail_N
UHGV-2075680_7	Pfam	PF20934	Bacillus phage phi29, Tail knob protein gp9, C-terminal domain	phi29_gp9_C
UHGV-2075680_7	Structural annotation	PF20934, PF16838	NA	NA
UHGV-2075680_10	PHROG	phrog_2006	major head protein	head and packaging
UHGV-2075680_10	UniRef90	UniRef90_A0A843HQR2	Ig-like domain-containing protein	NA
UHGV-2075680_10	eggNOG-mapper	10753.B7SSM8_BPNF	viral capsid	NA
UHGV-2075680_10	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-2075680_10	Structural annotation	PF19821, PF02368, MF_04119, NF033394, COG1659	NA	NA
UHGV-2075680_12	PHROG	phrog_11037	NA	unknown function
UHGV-2075680_12	UniRef90	UniRef90_A0A2Z4GUC1	Peptidoglycan hydrolase	NA
UHGV-2075680_12	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-2075680_12	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-2075680_12	COG	COG3942	Surface antigen	NA
UHGV-2075680_12	Structural annotation	PF18013, PF05382, NF008096, COG3738	NA	NA
UHGV-2075680_13	PHROG	phrog_7698	endolysin	lysis
UHGV-2075680_13	UniRef90	UniRef90_A0A3B9GPW1	Cpl-7 domain-containing protein	NA
UHGV-2075680_13	eggNOG-mapper	411490.ANACAC_00721	Cpl-7 lysozyme C-terminal domain protein	NA
UHGV-2075680_13	Pfam	PF08230	CW_7 repeat	CW_7
UHGV-2075680_13	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-2075680_13	Structural annotation	PF08230	NA	NA
UHGV-2075680_15	PHROG	phrog_6370	dsDNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2075680_15	Structural annotation	PF17548	NA	NA
UHGV-2075680_16	PHROG	phrog_6243	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2075680_16	UniRef90	UniRef90_A0A345BNN7	Single-stranded DNA-binding protein	NA
UHGV-2075680_16	eggNOG-mapper	307240.Q5ILD0_9VIRU	Pfam:Phi29_Phage_SSB	NA
UHGV-2075680_16	Pfam	PF17427	Phage Single-stranded DNA-binding protein	Phi29_Phage_SSB
UHGV-2075680_16	Structural annotation	PF17427	NA	NA
UHGV-2075680_17	Structural annotation	PF05435	NA	NA
UHGV-2075680_18	KOfam	K21237	gp2; Podoviridae DNA polymerase [EC:2.7.7.7]	NA
UHGV-2075680_18	PHROG	phrog_1907	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-2075680_18	UniRef90	UniRef90_A0A355RJ67	DNA-directed DNA polymerase	NA
UHGV-2075680_18	eggNOG-mapper	10753.DPOL_BPNF	nucleotide binding	NA
UHGV-2075680_18	Pfam	PF03175	DNA polymerase type B, organellar and viral	DNA_pol_B_2
UHGV-2075680_18	Structural annotation	PF03175, MF_04055, NF004415, COG0417	NA	NA
UHGV-2075680_19	PHROG	phrog_2150	terminase	head and packaging
UHGV-2075680_19	UniRef90	UniRef90_A0A843HWD4	Phage DNA encapsidation protein	NA
UHGV-2075680_19	eggNOG-mapper	503388.B1ABI1_9CAUD	Podovirus DNA encapsidation protein (Gp16)	NA
UHGV-2075680_19	Pfam	PF05894	Podovirus DNA encapsidation protein (Gp16)	Podovirus_Gp16
UHGV-2075680_19	Structural annotation	PF05894, MF_04145, TIGR01547, COG1783	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2075680	Yes	17,702 bps	41.53%	79.83%	0.9820
UHGV-0129143	No	15,842 bps	40.30%	71.48%	0.9819
UHGV-1506058	No	15,842 bps	40.30%	71.48%	0.9819
UHGV-1458567	No	15,135 bps	40.87%	68.29%	0.9821
UHGV-1392256	No	11,865 bps	41.08%	53.54%	0.9828
UHGV-1493987	No	14,839 bps	41.05%	46.89%	0.9816