vOTU-018233

Overview

vOTU representative UHGV-0197412

No. of genomes 5

Genome length 38,107 bps

Completeness 75.29% (medium-quality)

Host Scatacola A faecigallinarum

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-018233
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00095 › vOTU-018233
Host taxonomy	Bacteria › Proteobacteria › Alphaproteobacteria › RF32 › CAG-239 › Scatacola A › Scatacola A faecigallinarum
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0197412
BioSample	NA
Genome length	38,107 bps
CheckV completeness	75.29% (medium-quality)
CheckV contamination	0.00%
CDS count	61
CDS density	92.41%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0197412_1	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0197412_1	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0197412_1	UniRef90	UniRef90_R6HUJ5	Putative prophage repressor	NA
UHGV-0197412_1	eggNOG-mapper	1088868.CIN_09800	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0197412_1	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0197412_1	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0197412_1	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0197412_1	Structural annotation	PF00717, PF01381, MF_00015, NF007257, NF007621, COG2932	NA	NA
UHGV-0197412_2	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0197412_2	Structural annotation	PF07603	NA	NA
UHGV-0197412_5	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0197412_5	UniRef90	UniRef90_A0A1Q6UF07	Bro-N domain-containing protein	NA
UHGV-0197412_5	eggNOG-mapper	669262.COK_0689	BRO family, N-terminal domain	NA
UHGV-0197412_5	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0197412_5	COG	COG3617	Prophage antirepressor	NA
UHGV-0197412_7	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0197412_7	UniRef90	UniRef90_UPI000985D1CB	ERF family protein	NA
UHGV-0197412_7	eggNOG-mapper	762982.HMPREF9442_00551	Erf family	NA
UHGV-0197412_7	Pfam	PF04404	ERF superfamily	ERF
UHGV-0197412_7	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0197412_8	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0197412_8	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0197412_9	Structural annotation	PF07603	NA	NA
UHGV-0197412_10	COG	COG0515	Serine/threonine protein kinase	NA
UHGV-0197412_10	Structural annotation	PF07603	NA	NA
UHGV-0197412_14	Structural annotation	PF13973, MF_01194, NF010729, COG4873	NA	NA
UHGV-0197412_17	KOfam	K14059	int; integrase	NA
UHGV-0197412_17	PHROG	phrog_1	integrase	integration and excision
UHGV-0197412_17	UniRef90	UniRef90_A0A0D6MND3	Integrase family protein	NA
UHGV-0197412_17	eggNOG-mapper	452662.SJA_C1-30100	DNA integration	NA
UHGV-0197412_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0197412_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0197412_17	Structural annotation	PF00589, PF12834, PF12167, MF_01807, NF001399, NF041908, COG4974	NA	NA
UHGV-0197412_21	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0197412_21	PHROG	phrog_7	endolysin	lysis
UHGV-0197412_21	UniRef90	UniRef90_A0A1Q6T4A9	Lysozyme	NA
UHGV-0197412_21	eggNOG-mapper	459349.CLOAM0215	cytolysis by virus of host cell	NA
UHGV-0197412_21	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0197412_21	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0197412_21	Structural annotation	PF00959, MF_04136, COG3772	NA	NA
UHGV-0197412_23	KOfam	K16862	PLD6; mitochondrial cardiolipin hydrolase [EC:3.1.4.-]	NA
UHGV-0197412_23	PHROG	phrog_12711	NA	unknown function
UHGV-0197412_23	UniRef90	UniRef90_R5RCI2	PLD phosphodiesterase domain-containing protein	NA
UHGV-0197412_23	eggNOG-mapper	153721.MYP_1580	PLD-like domain	NA
UHGV-0197412_23	Pfam	PF13091	PLD-like domain	PLDc_2
UHGV-0197412_23	COG	COG1502	Phosphatidylserine/phosphatidylglycerophosphate/cardiolipin synthase	NA
UHGV-0197412_24	Structural annotation	PF12810	NA	NA
UHGV-0197412_25	PHROG	phrog_12796	tail fiber protein	tail
UHGV-0197412_25	eggNOG-mapper	1187128.I2GUG1_9CAUD	NA	NA
UHGV-0197412_26	PHROG	phrog_587	structural protein	head and packaging
UHGV-0197412_26	UniRef90	UniRef90_UPI001CBB50AB	NA	NA
UHGV-0197412_26	eggNOG-mapper	882378.RBRH_01192	NA	NA
UHGV-0197412_26	Pfam	PF11041	NA	DUF2612
UHGV-0197412_26	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0197412_27	PHROG	phrog_6	baseplate protein	tail
UHGV-0197412_27	UniRef90	UniRef90_A0A1U7GLQ5	Baseplate_J domain-containing protein	NA
UHGV-0197412_27	eggNOG-mapper	882378.RBRH_01193	Baseplate J-like protein	NA
UHGV-0197412_27	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0197412_27	COG	COG3299	NA	NA
UHGV-0197412_27	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0197412_28	PHROG	phrog_120	baseplate protein	tail
UHGV-0197412_28	UniRef90	UniRef90_Q2L2U8	Phage protein (Fragment)	NA
UHGV-0197412_28	eggNOG-mapper	360910.BAV1334	NA	NA
UHGV-0197412_28	Structural annotation	PF10934, MF_02010, TIGR03357, COG3628	NA	NA
UHGV-0197412_29	UniRef90	UniRef90_Q6IWQ1	Gp10 V	NA
UHGV-0197412_29	eggNOG-mapper	279530.Q6IWQ1_9CAUD	NA	NA
UHGV-0197412_29	Pfam	PF18352	NA	Gp138_N
UHGV-0197412_29	Structural annotation	PF18352, TIGR01644, COG4540	NA	NA
UHGV-0197412_30	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0197412_30	eggNOG-mapper	882378.RBRH_01196	NA	NA
UHGV-0197412_30	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0197412_31	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0197412_31	UniRef90	UniRef90_A0A225DB69	NA	NA
UHGV-0197412_31	eggNOG-mapper	882378.RBRH_01197	NA	NA
UHGV-0197412_32	PHROG	phrog_817	tail fiber protein	tail
UHGV-0197412_32	eggNOG-mapper	882378.RBRH_01198	NA	NA
UHGV-0197412_32	Pfam	PF21821	Dit-like phage tail protein	Dit_like
UHGV-0197412_33	PHROG	phrog_3824	NA	unknown function
UHGV-0197412_33	UniRef90	UniRef90_A0A345MV29	Tail protein	NA
UHGV-0197412_33	eggNOG-mapper	669262.COK_0659	domain protein	NA
UHGV-0197412_33	COG	COG0741	Soluble lytic murein transglycosylase or regulatory protein s ( may contain LysM/invasin domain)	NA
UHGV-0197412_33	Structural annotation	PF18013, TIGR01760, COG4764	NA	NA
UHGV-0197412_34	UniRef90	UniRef90_Q6IWV4	Gp15 E	NA
UHGV-0197412_34	eggNOG-mapper	1094558.ME5_01663	NA	NA
UHGV-0197412_34	Structural annotation	PF16462	NA	NA
UHGV-0197412_35	PHROG	phrog_2420	tail fiber protein	tail
UHGV-0197412_35	UniRef90	UniRef90_A0A482MIF6	Virion protein	NA
UHGV-0197412_35	eggNOG-mapper	882378.RBRH_01201	NA	NA
UHGV-0197412_35	Structural annotation	PF11681, TIGR01603, COG5437	NA	NA
UHGV-0197412_36	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0197412_36	UniRef90	UniRef90_A0A2Z3I1Q4	NA	NA
UHGV-0197412_36	eggNOG-mapper	882378.RBRH_01202	NA	NA
UHGV-0197412_36	Pfam	PF11863	NA	DUF3383
UHGV-0197412_36	Structural annotation	PF11863, COG4386	NA	NA
UHGV-0197412_37	PHROG	phrog_4414	NA	unknown function
UHGV-0197412_37	Structural annotation	PF09646	NA	NA
UHGV-0197412_38	PHROG	phrog_4475	head protein	head and packaging
UHGV-0197412_38	eggNOG-mapper	882378.RBRH_01204	NA	NA
UHGV-0197412_38	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0197412_39	PHROG	phrog_222	tail protein	tail
UHGV-0197412_39	UniRef90	UniRef90_A0A2I7QJD5	Neck protein	NA
UHGV-0197412_39	eggNOG-mapper	551895.B5AX61_9CAUD	NA	NA
UHGV-0197412_40	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0197412_40	UniRef90	UniRef90_UPI0018D00453	NA	NA
UHGV-0197412_40	eggNOG-mapper	882378.RBRH_01206	NA	NA
UHGV-0197412_40	Pfam	PF13262	NA	DUF4054
UHGV-0197412_40	Structural annotation	PF13262	NA	NA
UHGV-0197412_41	PHROG	phrog_3714	NA	unknown function
UHGV-0197412_41	UniRef90	UniRef90_H0F6T3	NA	NA
UHGV-0197412_41	eggNOG-mapper	742159.HMPREF0004_2580	NA	NA
UHGV-0197412_42	PHROG	phrog_264	major head protein	head and packaging
UHGV-0197412_42	UniRef90	UniRef90_UPI00036421A8	NA	NA
UHGV-0197412_42	eggNOG-mapper	882378.RBRH_01208	Protein conserved in bacteria	NA
UHGV-0197412_42	Pfam	PF09950	NA	DUF2184
UHGV-0197412_42	COG	COG4834	NA	NA
UHGV-0197412_42	Structural annotation	PF09950, MF_04119, NF041155, COG4834	NA	NA
UHGV-0197412_43	PHROG	phrog_3645	virion structural protein	head and packaging
UHGV-0197412_43	eggNOG-mapper	882378.RBRH_01209	NA	NA
UHGV-0197412_43	Structural annotation	COG5471	NA	NA
UHGV-0197412_44	KOfam	K09960	NA	NA
UHGV-0197412_44	PHROG	phrog_3778	head maturation protease	head and packaging
UHGV-0197412_44	UniRef90	UniRef90_A0A562X740	NA	NA
UHGV-0197412_44	eggNOG-mapper	1433287.X808_9050	NA	NA
UHGV-0197412_44	Pfam	PF09979	NA	DUF2213
UHGV-0197412_44	COG	COG3566	NA	NA
UHGV-0197412_44	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0197412_45	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0197412_45	UniRef90	UniRef90_UPI0015E951FA	phage head morphogenesis protein	NA
UHGV-0197412_45	eggNOG-mapper	882378.RBRH_01211	Phage Mu protein F like protein	NA
UHGV-0197412_45	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0197412_45	COG	COG2369	NA	NA
UHGV-0197412_45	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0197412_46	KOfam	K09961	NA	NA
UHGV-0197412_46	PHROG	phrog_4660	minor head protein	head and packaging
UHGV-0197412_46	UniRef90	UniRef90_A0A225DU28	Phage-related protein	NA
UHGV-0197412_46	eggNOG-mapper	882378.RBRH_01212	NA	NA
UHGV-0197412_46	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0197412_46	Pfam	PF18809	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease1	PBECR1
UHGV-0197412_46	COG	COG3567	NA	NA
UHGV-0197412_46	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0197412_47	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0197412_47	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0197412_47	UniRef90	UniRef90_A0A1M6MYR1	Phage terminase, large subunit, PBSX family	NA
UHGV-0197412_47	eggNOG-mapper	203119.Cthe_2474	Phage terminase, large subunit, PBSX family	NA
UHGV-0197412_47	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0197412_47	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0197412_47	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0197412_47	COG	COG1783	Phage terminase large subunit	NA
UHGV-0197412_47	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0197412_48	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0197412_48	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0197412_48	UniRef90	UniRef90_UPI00030D8FE5	terminase small subunit	NA
UHGV-0197412_48	eggNOG-mapper	1123508.JH636446_gene6124	DNA packaging	NA
UHGV-0197412_48	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0197412_48	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0197412_48	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0197412_49	Structural annotation	PF00210, MF_01441, NF006975, COG2406	NA	NA
UHGV-0197412_51	UniRef90	UniRef90_A0A7L6AAJ6	Zinc ribbon domain-containing protein	NA
UHGV-0197412_52	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0197412_52	UniRef90	UniRef90_A0A448K041	Putative anti-repressor protein	NA
UHGV-0197412_52	eggNOG-mapper	641147.HMPREF9021_01980	BRO family, N-terminal domain	NA
UHGV-0197412_52	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0197412_52	COG	COG3617	Prophage antirepressor	NA
UHGV-0197412_55	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0197412_55	eggNOG-mapper	1094715.CM001373_gene3272	NA	NA
UHGV-0197412_56	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0197412_56	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0197412_56	UniRef90	UniRef90_A0A661TKJ6	Methyltransferase	NA
UHGV-0197412_56	eggNOG-mapper	97139.C824_00741	DNA methylase	NA
UHGV-0197412_56	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0197412_56	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0197412_56	COG	COG0863	DNA modification methylase	NA
UHGV-0197412_56	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-0197412_59	Structural annotation	PF04447	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0197412	Yes	38,107 bps	45.86%	75.29%	0.9436
UHGV-0165588	No	32,964 bps	45.85%	62.90%	0.8926
UHGV-0158245	No	22,783 bps	48.85%	43.28%	0.8593
UHGV-1726910	No	21,342 bps	47.91%	38.43%	0.9431
UHGV-1599134	No	19,092 bps	47.99%	34.48%	0.9124