vOTU-018299

Overview

vOTU representative UHGV-0196999

No. of genomes 5

Genome length 44,022 bps

Completeness 81.56% (medium-quality)

Host CAG-115 sp003531585

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-018299
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-03281 › vOTU-018299
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › CAG-115 › CAG-115 sp003531585
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0196999
BioSample	SAMN06164566
Genome length	44,022 bps
CheckV completeness	81.56% (medium-quality)
CheckV contamination	0.00%
CDS count	62
CDS density	88.13%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0196999_1	KOfam	K19824	fprB; rubrerythrin	NA
UHGV-0196999_1	UniRef90	UniRef90_R5GTZ2	Rubrerythrin	NA
UHGV-0196999_1	eggNOG-mapper	742740.HMPREF9474_01876	Rubrerythrin	NA
UHGV-0196999_1	Pfam	PF02915	Rubrerythrin	Rubrerythrin
UHGV-0196999_1	Pfam	PF21349	Rubrerythrin, rubredoxin-like domain	RUBY_RBDX
UHGV-0196999_1	COG	COG1592	Rubrerythrin	NA
UHGV-0196999_1	Structural annotation	PF02915, NF011597, COG1592	NA	NA
UHGV-0196999_2	NCBIFam	NF033846.1	NPXTG-anchored protein	NA
UHGV-0196999_3	KOfam	K14059	int; integrase	NA
UHGV-0196999_3	PHROG	phrog_1	integrase	integration and excision
UHGV-0196999_3	UniRef90	UniRef90_R5GYW9	Phage integrase family	NA
UHGV-0196999_3	eggNOG-mapper	1226322.HMPREF1545_00144	Belongs to the 'phage' integrase family	NA
UHGV-0196999_3	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0196999_3	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0196999_3	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-0196999_4	PHROG	phrog_1914	NA	unknown function
UHGV-0196999_4	UniRef90	UniRef90_A0A3D4KZB6	Peptidase_M78 domain-containing protein	NA
UHGV-0196999_4	eggNOG-mapper	1195236.CTER_1175	competence protein COMEC	NA
UHGV-0196999_4	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0196999_4	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-0196999_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0196999_5	UniRef90	UniRef90_UPI000C06DDBF	helix-turn-helix domain-containing protein	NA
UHGV-0196999_5	eggNOG-mapper	1160721.RBI_I01471	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0196999_5	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0196999_5	Pfam	PF13878	zinc-finger of acetyl-transferase ESCO	zf-C2H2_3
UHGV-0196999_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0196999_6	UniRef90	UniRef90_A0A373XXU1	XRE family transcriptional regulator	NA
UHGV-0196999_6	eggNOG-mapper	428125.CLOLEP_02737	NA	NA
UHGV-0196999_6	Structural annotation	TIGR03070	NA	NA
UHGV-0196999_7	PHROG	phrog_14105	NA	unknown function
UHGV-0196999_7	UniRef90	UniRef90_U2BMS0	Pentapeptide repeat protein	NA
UHGV-0196999_7	eggNOG-mapper	742740.HMPREF9474_02379	dextransucrase activity	NA
UHGV-0196999_7	Pfam	PF01469	Pentapeptide repeats (8 copies)	Pentapeptide_2
UHGV-0196999_7	COG	COG5263	Glucan-binding domain (YG repeat)	NA
UHGV-0196999_10	UniRef90	UniRef90_A0A3D4KYM3	HTH cro/C1-type domain-containing protein	NA
UHGV-0196999_10	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0196999_14	PHROG	phrog_236	nucleotide kinase	other
UHGV-0196999_14	UniRef90	UniRef90_A0A417W9V0	NA	NA
UHGV-0196999_14	eggNOG-mapper	411473.RUMCAL_00920	NA	NA
UHGV-0196999_14	Pfam	PF11753	NA	DUF3310
UHGV-0196999_15	KOfam	K03465	thyX, thy1; thymidylate synthase (FAD) [EC:2.1.1.148]	NA
UHGV-0196999_15	PHROG	phrog_85	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0196999_15	UniRef90	UniRef90_A0A432UEH0	FAD-dependent thymidylate synthase	NA
UHGV-0196999_15	eggNOG-mapper	335543.Sfum_0400	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant	NA
UHGV-0196999_15	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0196999_15	NCBIFam	TIGR02170.1	FAD-dependent thymidylate synthase	NA
UHGV-0196999_15	COG	COG1351	Thymidylate synthase ThyX, FAD-dependent family	NA
UHGV-0196999_15	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0196999_16	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0196999_16	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0196999_16	UniRef90	UniRef90_A0A3D4KZM8	PAPS_reduct domain-containing protein	NA
UHGV-0196999_16	eggNOG-mapper	665956.HMPREF1032_00140	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0196999_16	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0196999_16	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0196999_16	Structural annotation	PF01507, MF_00063, NF006327, COG0175	NA	NA
UHGV-0196999_17	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0196999_17	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0196999_17	UniRef90	UniRef90_A0A0U1L2E6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0196999_17	eggNOG-mapper	1123288.SOV_2c03860	C-5 cytosine-specific DNA methylase	NA
UHGV-0196999_17	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0196999_17	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0196999_17	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0196999_17	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-0196999_18	PHROG	phrog_21649	NA	unknown function
UHGV-0196999_18	UniRef90	UniRef90_A0A3D4KYY8	Single-stranded DNA-binding protein	NA
UHGV-0196999_18	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-0196999_18	Pfam	PF04404	ERF superfamily	ERF
UHGV-0196999_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0196999_18	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0196999_21	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0196999_21	UniRef90	UniRef90_A0A3D4KYN1	NA	NA
UHGV-0196999_21	eggNOG-mapper	861454.HMPREF9099_00347	NA	NA
UHGV-0196999_21	Pfam	PF12684	NA	DUF3799
UHGV-0196999_21	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0196999_21	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0196999_23	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0196999_23	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0196999_24	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0196999_24	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0196999_24	UniRef90	UniRef90_A0A3D4KZ14	Single-stranded DNA-binding protein	NA
UHGV-0196999_24	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-0196999_24	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0196999_24	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0196999_24	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0196999_24	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0196999_24	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0196999_25	PHROG	phrog_3301	pyrophosphatase	other
UHGV-0196999_25	eggNOG-mapper	411459.RUMOBE_01042	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-0196999_25	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0196999_25	Structural annotation	COG1694	NA	NA
UHGV-0196999_26	PHROG	phrog_8684	NA	unknown function
UHGV-0196999_26	UniRef90	UniRef90_A0A1C6DXL6	YopX protein	NA
UHGV-0196999_26	eggNOG-mapper	397290.C810_01526	YopX protein	NA
UHGV-0196999_26	Pfam	PF09643	YopX protein	YopX
UHGV-0196999_26	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0196999_26	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0196999_27	PHROG	phrog_22543	NA	unknown function
UHGV-0196999_27	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0196999_30	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0196999_30	UniRef90	UniRef90_A0A3D4KYS5	ERCC4 domain-containing protein	NA
UHGV-0196999_30	eggNOG-mapper	373903.Hore_03490	ERCC4 domain	NA
UHGV-0196999_30	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0196999_30	Structural annotation	PF02732, NF040956, COG1948	NA	NA
UHGV-0196999_32	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0196999_32	UniRef90	UniRef90_A0A372V3W4	NA	NA
UHGV-0196999_32	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0196999_32	Pfam	PF06048	NA	DUF927
UHGV-0196999_32	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0196999_32	COG	COG5519	NA	NA
UHGV-0196999_32	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0196999_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0196999_35	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0196999_35	Structural annotation	PF16677	NA	NA
UHGV-0196999_39	UniRef90	UniRef90_A0A7C6Y3R2	Helix-turn-helix domain-containing protein	NA
UHGV-0196999_39	Structural annotation	PF20075, TIGR03070, COG1396	NA	NA
UHGV-0196999_40	UniRef90	UniRef90_A0A315YPS7	Helix-turn-helix protein	NA
UHGV-0196999_41	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0196999_41	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0196999_41	UniRef90	UniRef90_A0A3D4KYT5	Resolvase	NA
UHGV-0196999_41	eggNOG-mapper	536233.CLO_0531	Resolvase, N terminal domain	NA
UHGV-0196999_41	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0196999_41	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0196999_41	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0196999_42	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0196999_42	UniRef90	UniRef90_A0A3D4KYF7	DOD-type homing endonuclease domain-containing protein	NA
UHGV-0196999_42	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0196999_42	COG	COG5410	NA	NA
UHGV-0196999_42	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0196999_44	PHROG	phrog_64	portal protein	head and packaging
UHGV-0196999_44	UniRef90	UniRef90_A0A374HKE8	Phage portal protein	NA
UHGV-0196999_44	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0196999_44	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0196999_44	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0196999_45	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0196999_45	UniRef90	UniRef90_A0A3D4KYF4	Phage_Mu_F domain-containing protein	NA
UHGV-0196999_45	eggNOG-mapper	1329516.JPST01000018_gene2643	cell adhesion	NA
UHGV-0196999_45	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0196999_45	COG	COG2369	NA	NA
UHGV-0196999_45	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-0196999_46	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-0196999_46	eggNOG-mapper	1232453.BAIF02000058_gene1626	NA	NA
UHGV-0196999_46	Structural annotation	PF14265	NA	NA
UHGV-0196999_47	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0196999_47	UniRef90	UniRef90_A0A7C7ERB8	NA	NA
UHGV-0196999_47	eggNOG-mapper	398512.JQKC01000052_gene2672	NA	NA
UHGV-0196999_47	Pfam	PF17236	NA	DUF5309
UHGV-0196999_47	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0196999_48	UniRef90	UniRef90_A0A3D4KY33	DNA-packaging protein	NA
UHGV-0196999_48	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0196999_48	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0196999_48	Structural annotation	TIGR01560	NA	NA
UHGV-0196999_49	eggNOG-mapper	1232453.BAIF02000058_gene1630	NA	NA
UHGV-0196999_50	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0196999_50	UniRef90	UniRef90_A0A7C7ERK4	HK97 gp10 family phage protein	NA
UHGV-0196999_50	eggNOG-mapper	397290.C810_01411	NA	NA
UHGV-0196999_50	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0196999_51	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0196999_52	eggNOG-mapper	1121333.JMLH01000047_gene1013	NA	NA
UHGV-0196999_52	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0196999_53	Pfam	PF16478	NA	DUF5055
UHGV-0196999_55	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0196999_55	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0196999_55	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0196999_57	UniRef90	UniRef90_UPI000F0512BB	CopG family transcriptional regulator	NA
UHGV-0196999_57	eggNOG-mapper	478749.BRYFOR_07643	NA	NA
UHGV-0196999_57	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0196999_59	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0196999_59	UniRef90	UniRef90_A0A316P9G4	ORF6N domain-containing protein	NA
UHGV-0196999_59	eggNOG-mapper	1408823.AXUS01000024_gene2689	ORF6C domain	NA
UHGV-0196999_59	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0196999_59	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0196999_60	PHROG	phrog_1194	NA	unknown function
UHGV-0196999_60	Pfam	PF20458	NA	DUF6711
UHGV-0196999_60	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0196999_61	PHROG	phrog_23052	NA	unknown function
UHGV-0196999_61	eggNOG-mapper	483218.BACPEC_01320	NA	NA
UHGV-0196999_61	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0196999_62	Structural annotation	PF17954, MF_01537, NF007875, COG3123	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0196999	Yes	44,022 bps	50.99%	81.56%	0.9760
UHGV-0165696	No	42,527 bps	51.21%	78.99%	0.9752
UHGV-1394114	No	36,320 bps	51.83%	66.86%	0.9803
UHGV-1778645	No	19,453 bps	50.90%	36.40%	0.9776
UHGV-1827136	No	13,072 bps	50.76%	23.82%	0.9783