vOTU-018329

Overview

vOTU representative UHGV-0020781

No. of genomes 6

Genome length 30,873 bps

Completeness 88.15% (medium-quality)

Host Unclassified

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-018329
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00022 › vSUBFAM-05313 › vOTU-018329
Host taxonomy
Host range breadth
Host prediction method
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0020781
BioSample	SAMEA4765804
Genome length	30,873 bps
CheckV completeness	88.15% (medium-quality)
CheckV contamination	0.00%
CDS count	51
CDS density	92.25%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0020781_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0020781_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0020781_1	UniRef90	UniRef90_A0A174DLQ0	Recombinase	NA
UHGV-0020781_1	eggNOG-mapper	1128398.Curi_c22150	Resolvase, N terminal domain	NA
UHGV-0020781_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0020781_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0020781_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0020781_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0020781_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0020781_2	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0020781_2	PHROG	phrog_15286	NA	unknown function
UHGV-0020781_2	UniRef90	UniRef90_A0A351SRQ2	Phage antirepressor protein	NA
UHGV-0020781_2	eggNOG-mapper	743966.MYB_00115	BRO family, N-terminal domain	NA
UHGV-0020781_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0020781_2	COG	COG3617	Prophage antirepressor	NA
UHGV-0020781_2	Structural annotation	PF09669, NF008573, COG3617	NA	NA
UHGV-0020781_3	UniRef90	UniRef90_A0A0F4M2A1	Putative lipoprotein	NA
UHGV-0020781_3	eggNOG-mapper	1262449.CP6013_2082	NA	NA
UHGV-0020781_3	Structural annotation	PF11631, TIGR03066	NA	NA
UHGV-0020781_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0020781_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0020781_4	UniRef90	UniRef90_A0A3D0X8J2	LexA family transcriptional regulator	NA
UHGV-0020781_4	eggNOG-mapper	1118055.CAGU01000029_gene53	Peptidase S24-like	NA
UHGV-0020781_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020781_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0020781_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0020781_4	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-0020781_5	UniRef90	UniRef90_A0A353JBC0	HTH cro/C1-type domain-containing protein	NA
UHGV-0020781_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0020781_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0020781_12	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0020781_12	PHROG	phrog_6251	replisome organizer DnaA-like	DNA, RNA and nucleotide metabolism
UHGV-0020781_12	UniRef90	UniRef90_A0A353JBC1	DnaB_2 domain-containing protein (Fragment)	NA
UHGV-0020781_12	eggNOG-mapper	1340434.AXVA01000005_gene4826	Primosome, DnaD subunit	NA
UHGV-0020781_12	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0020781_12	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0020781_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0020781_12	Structural annotation	PF09681, PF07261, TIGR01714, TIGR01446, COG3935	NA	NA
UHGV-0020781_13	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0020781_13	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0020781_13	UniRef90	UniRef90_R5LJR5	SF4 helicase domain-containing protein	NA
UHGV-0020781_13	eggNOG-mapper	1232449.BAHV02000016_gene1835	Participates in initiation and elongation during chromosome replication	NA
UHGV-0020781_13	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0020781_13	COG	COG0305	Replicative DNA helicase	NA
UHGV-0020781_13	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0020781_16	KOfam	K06412	spoVG; stage V sporulation protein G	NA
UHGV-0020781_16	UniRef90	UniRef90_A0A098R2I0	Putative septation protein SpoVG	NA
UHGV-0020781_16	eggNOG-mapper	1480694.DC28_01185	Could be involved in septation	NA
UHGV-0020781_16	Pfam	PF04026	SpoVG	SpoVG
UHGV-0020781_16	COG	COG2088	DNA-binding protein SpoVG, cell septation regulator	NA
UHGV-0020781_16	Structural annotation	PF04026, MF_00819, NF009749, COG2088	NA	NA
UHGV-0020781_17	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0020781_17	PHROG	phrog_216	integrase	integration and excision
UHGV-0020781_17	UniRef90	UniRef90_R7ID34	Tyr recombinase domain-containing protein	NA
UHGV-0020781_17	eggNOG-mapper	1232446.BAIE02000002_gene805	Integrase	NA
UHGV-0020781_17	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0020781_17	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0020781_17	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0020781_19	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0020781_19	UniRef90	UniRef90_A0A1I0FCM6	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0020781_19	Structural annotation	PF07374, MF_00674, NF001074	NA	NA
UHGV-0020781_22	PHROG	phrog_4601	NA	unknown function
UHGV-0020781_22	Structural annotation	PF17888	NA	NA
UHGV-0020781_24	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-0020781_24	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-0020781_24	UniRef90	UniRef90_A0A7X8G798	RNA polymerase sigma factor	NA
UHGV-0020781_24	eggNOG-mapper	1033737.CAEV01000076_gene545	sigma factor activity	NA
UHGV-0020781_24	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-0020781_24	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0020781_24	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-0020781_24	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-0020781_24	Structural annotation	PF04542, PF08281, MF_00962, NF004471, COG1191	NA	NA
UHGV-0020781_27	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0020781_27	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0020781_27	UniRef90	UniRef90_W9E7Y3	HNH endonuclease	NA
UHGV-0020781_27	eggNOG-mapper	1094508.Tsac_2429	HNH nucleases	NA
UHGV-0020781_27	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0020781_27	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0020781_28	PHROG	phrog_1066	NA	unknown function
UHGV-0020781_28	eggNOG-mapper	500633.CLOHIR_00363	NA	NA
UHGV-0020781_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0020781_29	UniRef90	UniRef90_A0A1Y3PHV0	Terminase	NA
UHGV-0020781_29	eggNOG-mapper	1443122.Z958_05970	Terminase	NA
UHGV-0020781_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0020781_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0020781_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0020781_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0020781_30	PHROG	phrog_12	portal protein	head and packaging
UHGV-0020781_30	UniRef90	UniRef90_A0A4R6LE42	HK97 family phage portal protein	NA
UHGV-0020781_30	eggNOG-mapper	290402.Cbei_0907	Portal protein	NA
UHGV-0020781_30	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0020781_30	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0020781_30	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0020781_31	KOfam	K06904	NA	NA
UHGV-0020781_31	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0020781_31	UniRef90	UniRef90_UPI000B44726A	HK97 family phage prohead protease	NA
UHGV-0020781_31	eggNOG-mapper	324057.Pjdr2_1542	Caudovirus prohead serine protease	NA
UHGV-0020781_31	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0020781_31	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0020781_31	COG	COG3740	Phage head maturation protease	NA
UHGV-0020781_31	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0020781_32	PHROG	phrog_10	major head protein	head and packaging
UHGV-0020781_32	UniRef90	UniRef90_A0A521IU33	Phage major capsid protein	NA
UHGV-0020781_32	eggNOG-mapper	315730.BcerKBAB4_3428	Phage capsid family	NA
UHGV-0020781_32	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0020781_32	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0020781_32	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0020781_32	Structural annotation	PF05065, PF09032, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0020781_34	PHROG	phrog_5223	neck protein	connector
UHGV-0020781_34	eggNOG-mapper	411459.RUMOBE_00934	NA	NA
UHGV-0020781_34	Structural annotation	TIGR01560	NA	NA
UHGV-0020781_35	PHROG	phrog_1951	head-tail adaptor	connector
UHGV-0020781_35	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0020781_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0020781_36	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0020781_36	UniRef90	UniRef90_S0FP72	Phage protein, HK97 gp10 family	NA
UHGV-0020781_36	eggNOG-mapper	1195236.CTER_5108	Phage protein, HK97 gp10 family	NA
UHGV-0020781_36	Structural annotation	TIGR01725	NA	NA
UHGV-0020781_37	PHROG	phrog_78	tail terminator	connector
UHGV-0020781_37	eggNOG-mapper	439292.Bsel_3000	NA	NA
UHGV-0020781_37	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0020781_38	PHROG	phrog_88	major tail protein	tail
UHGV-0020781_38	UniRef90	UniRef90_R6GFP9	Putative major tail protein	NA
UHGV-0020781_38	eggNOG-mapper	394503.Ccel_2828	phage major tail protein, phi13 family	NA
UHGV-0020781_38	COG	COG5492	NA	NA
UHGV-0020781_38	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0020781_40	eggNOG-mapper	508419.F8J169_9CAUD	NA	NA
UHGV-0020781_40	Structural annotation	PF11836	NA	NA
UHGV-0020781_41	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-0020781_41	PHROG	phrog_8927	tail length tape measure protein	tail
UHGV-0020781_41	eggNOG-mapper	1688.BCUN_0257	phage tail tape measure protein	NA
UHGV-0020781_41	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0020781_41	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0020781_41	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0020781_42	PHROG	phrog_36410	NA	unknown function
UHGV-0020781_42	UniRef90	UniRef90_R5LJU7	Putative phage tail protein	NA
UHGV-0020781_42	eggNOG-mapper	411468.CLOSCI_00539	COG NOG18823 non supervised orthologous group	NA
UHGV-0020781_42	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0020781_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0020781_42	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0020781_43	PHROG	phrog_538	minor tail protein	tail
UHGV-0020781_43	UniRef90	UniRef90_UPI001D09A08A	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0020781_43	eggNOG-mapper	457421.CBFG_03719	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0020781_43	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0020781_43	Structural annotation	PF14594, PF14870, MF_01348, TIGR01665, NF010237, COG4926, COG4447	NA	NA
UHGV-0020781_44	PHROG	phrog_1220	head protein	head and packaging
UHGV-0020781_44	UniRef90	UniRef90_R5M2M1	Conserved domain protein	NA
UHGV-0020781_44	eggNOG-mapper	1033738.CAEP01000018_gene3685	NA	NA
UHGV-0020781_44	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0020781_44	Structural annotation	PF20747, PF02839	NA	NA
UHGV-0020781_48	Structural annotation	PF00386, NF033147	NA	NA
UHGV-0020781_49	PHROG	phrog_4105	NA	unknown function
UHGV-0020781_49	eggNOG-mapper	658655.HMPREF0988_02547	NA	NA
UHGV-0020781_50	PHROG	phrog_443	holin	lysis
UHGV-0020781_50	UniRef90	UniRef90_UPI001C10F455	holin	NA
UHGV-0020781_50	eggNOG-mapper	397287.C807_03698	Putative lactococcus lactis phage r1t holin	NA
UHGV-0020781_50	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0020781_50	Structural annotation	PF16945	NA	NA
UHGV-0020781_51	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0020781_51	PHROG	phrog_894	endolysin	lysis
UHGV-0020781_51	UniRef90	UniRef90_A0A843H2N1	Peptidoglycan-binding protein	NA
UHGV-0020781_51	eggNOG-mapper	903814.ELI_0060	Peptidase M15	NA
UHGV-0020781_51	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0020781_51	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0020781_51	COG	COG3108	NA	NA
UHGV-0020781_51	Structural annotation	PF08291, PF01471, COG3108	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0020781	Yes	30,873 bps	28.73%	88.15%	0.9676
UHGV-0016070	No	30,021 bps	29.01%	86.00%	0.9684
UHGV-1536638	No	26,323 bps	28.85%	78.65%	0.9700
UHGV-1514948	No	26,564 bps	28.99%	78.27%	0.9645
UHGV-0086792	No	26,323 bps	28.85%	75.26%	0.9559
UHGV-0007314	No	23,750 bps	28.59%	70.02%	0.9680