vOTU-018439

Overview

vOTU representative UHGV-1991541

No. of genomes 5

Genome length 39,223 bps

Completeness 85.27% (medium-quality)

Host Lachnospiraceae

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-018439
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-01272 › vGENUS-07390 › vOTU-018439
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae
Host range breadth	Family
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1991541
BioSample	SAMEA2580017
Genome length	39,223 bps
CheckV completeness	85.27% (medium-quality)
CheckV contamination	0.00%
CDS count	43
CDS density	94.51%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1991541_1	KOfam	K14059	int; integrase	NA
UHGV-1991541_1	PHROG	phrog_1	integrase	integration and excision
UHGV-1991541_1	UniRef90	UniRef90_F7JIF7	Tyr recombinase domain-containing protein	NA
UHGV-1991541_1	eggNOG-mapper	658655.HMPREF0988_00111	Phage integrase family	NA
UHGV-1991541_1	Pfam	PF02920	DNA binding domain of tn916 integrase	Integrase_DNA
UHGV-1991541_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1991541_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1991541_1	Structural annotation	PF00589, PF02920, PF14659, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1991541_2	PHROG	phrog_16129	excisionase	integration and excision
UHGV-1991541_2	UniRef90	UniRef90_B5CS09	Excisionase from transposon Tn916	NA
UHGV-1991541_2	eggNOG-mapper	658655.HMPREF0988_00110	Excisionase from transposon Tn916	NA
UHGV-1991541_2	Pfam	PF09035	Excisionase from transposon Tn916	Tn916-Xis
UHGV-1991541_2	Structural annotation	PF09035, TIGR01764	NA	NA
UHGV-1991541_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1991541_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1991541_3	UniRef90	UniRef90_A0A6I6I9J8	Helix-turn-helix domain-containing protein	NA
UHGV-1991541_3	eggNOG-mapper	641112.ACOK01000077_gene3043	Helix-turn-helix XRE-family like proteins	NA
UHGV-1991541_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1991541_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1991541_4	eggNOG-mapper	689781.AUJX01000031_gene91	NA	NA
UHGV-1991541_5	KOfam	K02395	flgJ; peptidoglycan hydrolase FlgJ	NA
UHGV-1991541_5	PHROG	phrog_20388	endolysin	lysis
UHGV-1991541_5	UniRef90	UniRef90_A0A6N2UIP8	Exo-glucosaminidase LytG	NA
UHGV-1991541_5	eggNOG-mapper	658655.HMPREF0988_00104	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1991541_5	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1991541_5	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1991541_5	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1991541_5	Structural annotation	PF01832, PF01510, MF_04111, NF038016, NF008758, COG1705, COG3023	NA	NA
UHGV-1991541_6	PHROG	phrog_21233	NA	unknown function
UHGV-1991541_6	UniRef90	UniRef90_UPI00189CC356	phage holin family protein	NA
UHGV-1991541_6	eggNOG-mapper	471875.RUMLAC_02256	toxin secretion phage lysis holin	NA
UHGV-1991541_6	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1991541_6	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1991541_6	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1991541_6	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1991541_7	PHROG	phrog_19291	NA	unknown function
UHGV-1991541_7	eggNOG-mapper	658655.HMPREF0988_00102	NA	NA
UHGV-1991541_7	Structural annotation	PF02191, COG3823	NA	NA
UHGV-1991541_8	PHROG	phrog_23052	NA	unknown function
UHGV-1991541_8	eggNOG-mapper	658655.HMPREF0988_00101	NA	NA
UHGV-1991541_8	Structural annotation	PF05954, PF16532, NF033848, COG3500	NA	NA
UHGV-1991541_10	KOfam	K01066	aes; acetyl esterase [EC:3.1.1.-]	NA
UHGV-1991541_10	PHROG	phrog_3341	esterase	other
UHGV-1991541_10	UniRef90	UniRef90_A0A174I1M8	Acetyl esterase	NA
UHGV-1991541_10	eggNOG-mapper	471875.RUMLAC_01244	alpha/beta hydrolase fold	NA
UHGV-1991541_10	Pfam	PF20434	BD-FAE	BD-FAE
UHGV-1991541_10	COG	COG0657	Acetyl esterase/lipase	NA
UHGV-1991541_12	PHROG	phrog_1194	NA	unknown function
UHGV-1991541_12	eggNOG-mapper	471875.RUMLAC_02250	NA	NA
UHGV-1991541_12	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1991541_13	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1991541_13	UniRef90	UniRef90_B5CRZ8	Phage tail tape measure protein, TP901 family	NA
UHGV-1991541_13	eggNOG-mapper	471875.RUMLAC_02249	Phage tail tape measure protein, TP901 family	NA
UHGV-1991541_13	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1991541_13	Pfam	PF05017	TMP repeat	TMP
UHGV-1991541_13	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1991541_13	COG	COG5283	Phage-related tail protein	NA
UHGV-1991541_13	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1991541_14	KOfam	K20156	sgcG; 2-amino-4-deoxychorismate dehydrogenase [EC:1.3.8.16]	NA
UHGV-1991541_14	UniRef90	UniRef90_A0A6N2VY19	NAD(P)H-dependent FMN-containing oxidoreductase YwqN	NA
UHGV-1991541_14	eggNOG-mapper	1280698.AUJS01000060_gene928	NADPH-dependent FMN reductase	NA
UHGV-1991541_14	Pfam	PF03358	NADPH-dependent FMN reductase	FMN_red
UHGV-1991541_14	COG	COG0655	Multimeric flavodoxin WrbA, includes NAD(P)H:quinone oxidoreductase	NA
UHGV-1991541_15	PHROG	phrog_3033	NA	unknown function
UHGV-1991541_15	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-1991541_15	eggNOG-mapper	471875.RUMLAC_02247	NA	NA
UHGV-1991541_16	PHROG	phrog_709	NA	unknown function
UHGV-1991541_16	eggNOG-mapper	471875.RUMLAC_02246	NA	NA
UHGV-1991541_16	Structural annotation	PF11836	NA	NA
UHGV-1991541_17	PHROG	phrog_88	major tail protein	tail
UHGV-1991541_17	UniRef90	UniRef90_UPI001899610E	phage tail protein	NA
UHGV-1991541_17	eggNOG-mapper	471875.RUMLAC_02245	phage major tail protein, phi13 family	NA
UHGV-1991541_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1991541_17	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1991541_18	PHROG	phrog_78	tail terminator	connector
UHGV-1991541_18	eggNOG-mapper	471875.RUMLAC_02244	NA	NA
UHGV-1991541_18	Structural annotation	PF20765	NA	NA
UHGV-1991541_19	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1991541_19	UniRef90	UniRef90_UPI0004E26AA1	HK97 gp10 family phage protein	NA
UHGV-1991541_19	eggNOG-mapper	471875.RUMLAC_02243	NA	NA
UHGV-1991541_19	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1991541_19	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1991541_20	PHROG	phrog_25	head closure Hc1	connector
UHGV-1991541_20	UniRef90	UniRef90_B5CRZ1	Putative phage head-tail adaptor	NA
UHGV-1991541_20	eggNOG-mapper	471875.RUMLAC_02242	Phage head-tail joining protein	NA
UHGV-1991541_20	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1991541_20	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1991541_20	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1991541_20	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1991541_21	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1991541_21	UniRef90	UniRef90_A0A3E4V5V3	Phage gp6-like head-tail connector protein	NA
UHGV-1991541_21	eggNOG-mapper	471875.RUMLAC_02241	Phage DNA packaging protein	NA
UHGV-1991541_21	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1991541_21	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1991541_21	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1991541_22	PHROG	phrog_10	major head protein	head and packaging
UHGV-1991541_22	UniRef90	UniRef90_B5CRY6	Phage major capsid protein, HK97 family	NA
UHGV-1991541_22	eggNOG-mapper	471875.RUMLAC_02237	Phage major capsid protein, HK97 family	NA
UHGV-1991541_22	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1991541_22	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1991541_22	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1991541_22	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1991541_23	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1991541_23	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1991541_23	UniRef90	UniRef90_A0A173W9F2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1991541_23	eggNOG-mapper	471875.RUMLAC_02236	Belongs to the peptidase S14 family	NA
UHGV-1991541_23	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1991541_23	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1991541_24	PHROG	phrog_12	portal protein	head and packaging
UHGV-1991541_24	UniRef90	UniRef90_D4LPW8	Phage portal protein, HK97 family	NA
UHGV-1991541_24	eggNOG-mapper	471875.RUMLAC_02235	Phage portal protein, HK97 family	NA
UHGV-1991541_24	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1991541_24	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1991541_24	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1991541_24	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1991541_25	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1991541_25	UniRef90	UniRef90_A0A1I7JUW4	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1991541_25	eggNOG-mapper	1235802.C823_01510	Phage Terminase	NA
UHGV-1991541_25	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1991541_25	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1991541_25	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1991541_25	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1991541_26	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1991541_26	UniRef90	UniRef90_B5CRY1	Phage terminase, small subunit, P27 family	NA
UHGV-1991541_26	eggNOG-mapper	1235802.C823_01509	Phage terminase, small subunit	NA
UHGV-1991541_26	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1991541_26	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-1991541_26	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1991541_26	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1991541_27	KOfam	K13655	mqsA; HTH-type transcriptional regulator / antitoxin MqsA	NA
UHGV-1991541_27	PHROG	phrog_10390	NA	unknown function
UHGV-1991541_27	UniRef90	UniRef90_UPI001C013A36	type II toxin-antitoxin system MqsA family antitoxin	NA
UHGV-1991541_27	eggNOG-mapper	97139.C824_00964	NA	NA
UHGV-1991541_27	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-1991541_27	NCBIFam	TIGR03830.1	type II TA system antitoxin MqsA family protein	NA
UHGV-1991541_27	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1991541_27	Structural annotation	PF15731, PF13274, TIGR03830, COG3600, COG2944	NA	NA
UHGV-1991541_28	eggNOG-mapper	877424.ATWC01000051_gene2348	NA	NA
UHGV-1991541_29	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1991541_29	PHROG	phrog_2323	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1991541_29	UniRef90	UniRef90_N2B2Y5	HNH domain-containing protein	NA
UHGV-1991541_29	eggNOG-mapper	1235802.C823_01506	HNH endonuclease	NA
UHGV-1991541_29	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1991541_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1991541_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1991541_30	UniRef90	UniRef90_A0A1Y4RDA5	Sigma70_r4 domain-containing protein	NA
UHGV-1991541_30	eggNOG-mapper	1256908.HMPREF0373_00785	NA	NA
UHGV-1991541_30	Pfam	PF07374	NA	DUF1492
UHGV-1991541_30	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1991541_30	Structural annotation	PF07374, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-1991541_31	PHROG	phrog_7024	NA	unknown function
UHGV-1991541_31	eggNOG-mapper	1256908.HMPREF0373_00784	NA	NA
UHGV-1991541_31	AcrCatalog	cluster_1398	NA	NA
UHGV-1991541_32	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1991541_32	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1991541_32	UniRef90	UniRef90_A0A3E4V696	ATP-dependent helicase	NA
UHGV-1991541_32	eggNOG-mapper	1256908.HMPREF0373_00783	SNF2 family N-terminal domain	NA
UHGV-1991541_32	PADLOC	DpdE_00003	DpdE	DPD
UHGV-1991541_32	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1991541_32	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1991541_32	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1991541_32	Structural annotation	PF16203, PF04851, MF_01821, NF041790, COG0553	NA	NA
UHGV-1991541_33	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1991541_33	UniRef90	UniRef90_A0A173WDN8	VRR-NUC domain	NA
UHGV-1991541_33	eggNOG-mapper	471875.RUMLAC_02224	VRR_NUC	NA
UHGV-1991541_33	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1991541_33	Structural annotation	PF01870, MF_00130, NF002584, COG1591	NA	NA
UHGV-1991541_34	KOfam	K06919	K06919; putative DNA primase/helicase	NA
UHGV-1991541_34	PHROG	phrog_1883	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1991541_34	UniRef90	UniRef90_A0A6N3AC11	SF3 helicase domain-containing protein	NA
UHGV-1991541_34	eggNOG-mapper	471875.RUMLAC_02223	Phage plasmid primase, P4 family	NA
UHGV-1991541_34	Pfam	PF08708	Primase C terminal 1 (PriCT-1)	PriCT_1
UHGV-1991541_34	Pfam	PF08706	D5 N terminal like	D5_N
UHGV-1991541_34	Pfam	PF19263	NA	DUF5906
UHGV-1991541_34	NCBIFam	TIGR01613.1	phage/plasmid primase, P4 family	NA
UHGV-1991541_34	COG	COG3378	DNA primase, phage- or plasmid-associated	NA
UHGV-1991541_34	Structural annotation	PF19263, PF08706, PF03288, PF09250, MF_04000, TIGR01613, COG3378	NA	NA
UHGV-1991541_36	PHROG	phrog_408	NA	unknown function
UHGV-1991541_36	UniRef90	UniRef90_A0A414D4B9	DNA ligase	NA
UHGV-1991541_36	eggNOG-mapper	471875.RUMLAC_02221	NOG23194 non supervised orthologous group	NA
UHGV-1991541_37	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1991541_37	UniRef90	UniRef90_A0A3E4V6H8	NA	NA
UHGV-1991541_37	eggNOG-mapper	471875.RUMLAC_02220	NA	NA
UHGV-1991541_37	Pfam	PF10926	NA	DUF2800
UHGV-1991541_37	COG	COG2887	RecB family exonuclease	NA
UHGV-1991541_37	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1991541_38	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1991541_38	UniRef90	UniRef90_A0A396Q0J8	NA	NA
UHGV-1991541_38	eggNOG-mapper	471875.RUMLAC_02219	NA	NA
UHGV-1991541_38	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1991541_38	Structural annotation	PF10991, MF_04153	NA	NA
UHGV-1991541_40	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1991541_40	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1991541_40	UniRef90	UniRef90_A0A173WDY8	DNA polymerase I, thermostable	NA
UHGV-1991541_40	eggNOG-mapper	471875.RUMLAC_02218	NA	NA
UHGV-1991541_40	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1991541_40	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1991541_40	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1991541_41	PHROG	phrog_29016	NA	unknown function
UHGV-1991541_41	UniRef90	UniRef90_A0A173WA89	Divergent AAA domain	NA
UHGV-1991541_41	eggNOG-mapper	537007.BLAHAN_06581	NA	NA
UHGV-1991541_41	Pfam	PF04326	Schlafen, AlbA_2	SLFN_AlbA_2
UHGV-1991541_41	COG	COG2865	Predicted transcriptional regulator, contains HTH domain	NA
UHGV-1991541_42	PHROG	phrog_19951	NA	unknown function
UHGV-1991541_42	UniRef90	UniRef90_A0A1M5WPQ2	Bacteriophage abortive infection AbiH	NA
UHGV-1991541_42	eggNOG-mapper	537007.BLAHAN_06582	Bacteriophage abortive infection AbiH	NA
UHGV-1991541_42	PADLOC	AbiH	AbiH	Abi
UHGV-1991541_42	Pfam	PF14253	Bacteriophage abortive infection AbiH	AbiH
UHGV-1991541_42	Structural annotation	PF14253	NA	NA
UHGV-1991541_43	KOfam	K03581	recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]	NA
UHGV-1991541_43	PHROG	phrog_325	Dda-like helicase	DNA, RNA and nucleotide metabolism
UHGV-1991541_43	UniRef90	UniRef90_A0A173WA52	Exonuclease V subunit alpha	NA
UHGV-1991541_43	eggNOG-mapper	537007.BLAHAN_06583	NA	NA
UHGV-1991541_43	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-1991541_43	Pfam	PF01443	Viral (Superfamily 1) RNA helicase	Viral_helicase1
UHGV-1991541_43	Pfam	PF13538	UvrD-like helicase C-terminal domain	UvrD_C_2
UHGV-1991541_43	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-1991541_43	Structural annotation	PF13604, MF_01488, TIGR01448, COG0507	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1991541	Yes	39,223 bps	44.13%	85.27%	0.9458
UHGV-2163523	No	41,170 bps	43.81%	89.83%	0.9502
UHGV-0188460	No	39,367 bps	44.14%	85.88%	0.9597
UHGV-1971066	No	30,145 bps	44.93%	65.64%	0.9550
UHGV-0188132	No	29,434 bps	44.30%	64.51%	0.9638