vOTU-018470

Overview

vOTU representative UHGV-2029640

No. of genomes 5

Genome length 30,352 bps

Completeness 81.83% (medium-quality)

Host Ruminococcus C sp000433635

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-018470
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-00197 › vGENUS-01490 › vOTU-018470
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruminococcus C › Ruminococcus C sp000433635
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2029640
BioSample	SAMEA2737806
Genome length	30,352 bps
CheckV completeness	81.83% (medium-quality)
CheckV contamination	0.00%
CDS count	44
CDS density	94.86%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2029640_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2029640_1	PHROG	phrog_95	integrase	integration and excision
UHGV-2029640_1	UniRef90	UniRef90_A0A6G3M4R6	Recombinase family protein	NA
UHGV-2029640_1	eggNOG-mapper	1120746.CCNL01000014_gene2079	Recombinase	NA
UHGV-2029640_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2029640_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-2029640_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2029640_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-2029640_1	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-2029640_2	PHROG	phrog_1914	NA	unknown function
UHGV-2029640_2	UniRef90	UniRef90_R7FBB0	Putative toxin-antitoxin system toxin component	NA
UHGV-2029640_2	eggNOG-mapper	1160721.RBI_II00490	NA	NA
UHGV-2029640_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-2029640_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-2029640_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-2029640_3	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-2029640_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2029640_3	UniRef90	UniRef90_UPI001D0FD5A9	helix-turn-helix transcriptional regulator	NA
UHGV-2029640_3	eggNOG-mapper	411468.CLOSCI_00323	sequence-specific DNA binding	NA
UHGV-2029640_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2029640_3	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2029640_3	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-2029640_5	PHROG	phrog_15404	NA	unknown function
UHGV-2029640_6	eggNOG-mapper	479437.Elen_2594	NA	NA
UHGV-2029640_6	Structural annotation	PF05339, NF041951, COG1476	NA	NA
UHGV-2029640_14	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-2029640_14	PHROG	phrog_1499	NA	unknown function
UHGV-2029640_14	UniRef90	UniRef90_A0A3C0II26	Chromosome segregation protein SMC	NA
UHGV-2029640_14	eggNOG-mapper	1262914.BN533_01950	AAA domain	NA
UHGV-2029640_14	Pfam	PF02463	RecF/RecN/SMC N terminal domain	SMC_N
UHGV-2029640_14	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-2029640_14	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-2029640_16	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2029640_16	UniRef90	UniRef90_UPI0011620CA2	AAA family ATPase	NA
UHGV-2029640_16	eggNOG-mapper	641112.ACOK01000073_gene2874	AAA domain	NA
UHGV-2029640_16	Pfam	PF13479	AAA domain	AAA_24
UHGV-2029640_16	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-2029640_17	PHROG	phrog_2698	NA	unknown function
UHGV-2029640_17	UniRef90	UniRef90_A0A3D1HDU6	NA	NA
UHGV-2029640_17	eggNOG-mapper	641112.ACOK01000073_gene2875	NA	NA
UHGV-2029640_17	Structural annotation	PF17426, NF005674	NA	NA
UHGV-2029640_18	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-2029640_18	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-2029640_18	UniRef90	UniRef90_R7GUH4	Helicase C-terminal domain protein	NA
UHGV-2029640_18	eggNOG-mapper	641112.ACOK01000073_gene2876	helicase superfamily c-terminal domain	NA
UHGV-2029640_18	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-2029640_18	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-2029640_18	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-2029640_18	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-2029640_18	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-2029640_19	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-2029640_19	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-2029640_19	UniRef90	UniRef90_A0A3C0IIQ3	DNA primase	NA
UHGV-2029640_19	eggNOG-mapper	641112.ACOK01000073_gene2877	Primase C terminal 2 (PriCT-2)	NA
UHGV-2029640_19	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-2029640_19	Pfam	PF13481	AAA domain	AAA_25
UHGV-2029640_19	COG	COG3598	RecA-family ATPase	NA
UHGV-2029640_19	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-2029640_20	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2029640_20	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2029640_20	UniRef90	UniRef90_A0A3D5KWI4	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-2029640_20	eggNOG-mapper	641112.ACOK01000073_gene2878	endodeoxyribonuclease RusA	NA
UHGV-2029640_20	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2029640_20	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2029640_20	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2029640_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-2029640_21	UniRef90	UniRef90_UPI001D017002	NA	NA
UHGV-2029640_21	Structural annotation	PF04545, MF_00674, TIGR02980, COG1595	NA	NA
UHGV-2029640_22	PHROG	phrog_24579	terminase small subunit	head and packaging
UHGV-2029640_22	UniRef90	UniRef90_A0A3C0II61	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-2029640_22	eggNOG-mapper	926561.KB900624_gene2637	Helix-turn-helix of insertion element transposase	NA
UHGV-2029640_22	Pfam	PF13022	Helix-turn-helix of insertion element transposase	HTH_Tnp_1_2
UHGV-2029640_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-2029640_23	PHROG	phrog_10250	NA	unknown function
UHGV-2029640_23	UniRef90	UniRef90_A0A3D5KXX3	PBSX family phage terminase large subunit	NA
UHGV-2029640_23	eggNOG-mapper	641112.ACOK01000073_gene2888	Phage terminase, large subunit, PBSX family	NA
UHGV-2029640_23	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-2029640_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-2029640_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-2029640_23	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-2029640_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-2029640_24	UniRef90	UniRef90_U2KRP5	Putative phage minor capsid protein	NA
UHGV-2029640_24	eggNOG-mapper	411473.RUMCAL_01924	NA	NA
UHGV-2029640_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-2029640_25	PHROG	phrog_581	minor head protein	head and packaging
UHGV-2029640_25	UniRef90	UniRef90_U2K8C2	Phage minor capsid protein 2	NA
UHGV-2029640_25	eggNOG-mapper	411473.RUMCAL_01925	NA	NA
UHGV-2029640_25	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-2029640_25	COG	COG2369	NA	NA
UHGV-2029640_25	Structural annotation	PF06152	NA	NA
UHGV-2029640_31	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-2029640_31	UniRef90	UniRef90_R7FEY9	Phage minor structural protein GP20	NA
UHGV-2029640_31	eggNOG-mapper	411473.RUMCAL_01929	Phage minor structural protein GP20	NA
UHGV-2029640_31	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-2029640_31	Structural annotation	PF06810, MF_02110	NA	NA
UHGV-2029640_32	PHROG	phrog_267	major head protein	head and packaging
UHGV-2029640_32	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-2029640_32	eggNOG-mapper	411473.RUMCAL_01930	NA	NA
UHGV-2029640_32	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-2029640_33	PHROG	phrog_541	head-tail adaptor	connector
UHGV-2029640_33	eggNOG-mapper	641112.ACOK01000073_gene2896	NA	NA
UHGV-2029640_34	PHROG	phrog_3366	NA	unknown function
UHGV-2029640_34	eggNOG-mapper	411473.RUMCAL_01932	NA	NA
UHGV-2029640_34	Pfam	PF20536	NA	DUF6751
UHGV-2029640_34	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-2029640_35	PHROG	phrog_556	minor head protein	head and packaging
UHGV-2029640_35	UniRef90	UniRef90_A0A352TI11	Capsid protein	NA
UHGV-2029640_35	eggNOG-mapper	883114.HMPREF9709_01190	Minor capsid protein	NA
UHGV-2029640_35	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-2029640_35	Structural annotation	PF11114	NA	NA
UHGV-2029640_36	PHROG	phrog_3266	tail completion	connector
UHGV-2029640_36	UniRef90	UniRef90_A0A3C0IHV8	Chloramphenicol resistance protein	NA
UHGV-2029640_36	eggNOG-mapper	573061.Clocel_3537	NA	NA
UHGV-2029640_36	Structural annotation	PF12691	NA	NA
UHGV-2029640_37	PHROG	phrog_3099	NA	unknown function
UHGV-2029640_37	eggNOG-mapper	411473.RUMCAL_01935	NA	NA
UHGV-2029640_38	PHROG	phrog_4450	NA	unknown function
UHGV-2029640_38	UniRef90	UniRef90_A0A413QHF8	AP endonuclease	NA
UHGV-2029640_38	eggNOG-mapper	641112.ACOK01000073_gene2902	NA	NA
UHGV-2029640_38	Pfam	PF20378	NA	DUF6673
UHGV-2029640_38	Structural annotation	PF20378	NA	NA
UHGV-2029640_39	PHROG	phrog_706	NA	unknown function
UHGV-2029640_39	UniRef90	UniRef90_A6BEQ8	Bacteriophage Gp15 protein	NA
UHGV-2029640_39	eggNOG-mapper	411462.DORLON_00779	COG NOG24969 non supervised orthologous group	NA
UHGV-2029640_39	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-2029640_39	Structural annotation	PF06854	NA	NA
UHGV-2029640_40	PHROG	phrog_5218	NA	unknown function
UHGV-2029640_40	UniRef90	UniRef90_A0A3D5KWG5	PhageMin_Tail domain-containing protein	NA
UHGV-2029640_40	eggNOG-mapper	1235792.C808_03050	Phage-related minor tail protein	NA
UHGV-2029640_40	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-2029640_40	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-2029640_40	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-2029640_41	Structural annotation	PF05939, TIGR01633, COG4718	NA	NA
UHGV-2029640_42	Structural annotation	PF14594, TIGR03361, COG3500	NA	NA
UHGV-2029640_43	PHROG	phrog_25888	NA	unknown function
UHGV-2029640_43	eggNOG-mapper	411473.RUMCAL_01941	cell adhesion	NA
UHGV-2029640_43	COG	COG3468	Autotransporter adhesin AidA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2029640	Yes	30,352 bps	47.31%	81.83%	0.9758
UHGV-0081116	No	25,786 bps	47.68%	66.51%	0.9794
UHGV-0190755	No	20,149 bps	47.97%	50.14%	0.9788
UHGV-0104739	No	14,600 bps	50.51%	36.04%	0.9777
UHGV-2117083	No	11,873 bps	50.49%	29.25%	0.9804