vOTU-018481

Overview

vOTU representative UHGV-1998409

No. of genomes 5

Genome length 38,578 bps

Completeness 61.89% (medium-quality)

Host Ruminococcus C sp000433635

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-018481
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-04686 › vOTU-018481
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruminococcus C › Ruminococcus C sp000433635
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1998409
BioSample	SAMEA2580021
Genome length	38,578 bps
CheckV completeness	61.89% (medium-quality)
CheckV contamination	23.22%
CDS count	43
CDS density	89.79%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1998409_1	UniRef90	UniRef90_U2LM18	AAA-ATPase_like domain-containing protein	NA
UHGV-1998409_1	eggNOG-mapper	411473.RUMCAL_03147	PD-(D/E)XK nuclease superfamily	NA
UHGV-1998409_1	Pfam	PF09820	Predicted AAA-ATPase	AAA-ATPase_like
UHGV-1998409_1	Pfam	PF08011	PD-(D/E)XK nuclease superfamily	PDDEXK_9
UHGV-1998409_1	COG	COG1672	Predicted ATPase, archaeal AAA+ ATPase superfamily	NA
UHGV-1998409_1	Structural annotation	PF09820, PF08011, MF_01247, MF_00048, NF011275, NF001623, COG2909, COG0792	NA	NA
UHGV-1998409_2	KOfam	K07317	K07317; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1998409_2	PHROG	phrog_25988	NA	unknown function
UHGV-1998409_2	UniRef90	UniRef90_A0A374VVK6	Class I SAM-dependent DNA methyltransferase	NA
UHGV-1998409_2	eggNOG-mapper	697329.Rumal_3270	Pfam:Methyltransf_26	NA
UHGV-1998409_2	PADLOC	REase_MTase_IIG_00003	Type IIG restriction enzyme-methyltransferase	RM
UHGV-1998409_2	Pfam	PF20464	MmeI, N-terminal domain	MmeI_N
UHGV-1998409_2	Pfam	PF20465	MmeI, helicase spacer domain	MmeI_hel
UHGV-1998409_2	Pfam	PF20473	MmeI, DNA-methyltransferase domain	MmeI_Mtase
UHGV-1998409_2	Pfam	PF20466	MmeI, target recognition domain	MmeI_TRD
UHGV-1998409_2	Pfam	PF20467	MmeI, C-terminal domain	MmeI_C
UHGV-1998409_2	COG	COG1002	Type II restriction/modification system, endonuclease and methylase domains	NA
UHGV-1998409_2	Structural annotation	PF20466, PF20473, PF20464, PF20467, MF_01858, NF033451, COG4889	NA	NA
UHGV-1998409_3	PHROG	phrog_10226	NA	unknown function
UHGV-1998409_3	eggNOG-mapper	1347369.CCAD010000077_gene2877	Restriction endonuclease	NA
UHGV-1998409_3	COG	COG1715	Restriction endonuclease Mrr	NA
UHGV-1998409_3	Structural annotation	COG4127	NA	NA
UHGV-1998409_4	PHROG	phrog_16683	NA	unknown function
UHGV-1998409_4	UniRef90	UniRef90_A0A1H7FG63	Putative amidoligase enzyme	NA
UHGV-1998409_4	eggNOG-mapper	641112.ACOK01000099_gene354	NA	NA
UHGV-1998409_4	Pfam	PF00412	LIM domain	LIM
UHGV-1998409_4	Pfam	PF12224	Putative amidoligase enzyme	Amidoligase_2
UHGV-1998409_4	Structural annotation	PF12224, MF_01609, NF010042, COG2170	NA	NA
UHGV-1998409_5	KOfam	K00764	purF, PPAT; amidophosphoribosyltransferase [EC:2.4.2.14]	NA
UHGV-1998409_5	PHROG	phrog_13807	NA	unknown function
UHGV-1998409_5	UniRef90	UniRef90_A0A374VSX6	Glucosamine 6-phosphate synthetase	NA
UHGV-1998409_5	eggNOG-mapper	411473.RUMCAL_01442	Class II glutamine amidotransferase	NA
UHGV-1998409_5	Pfam	PF13522	Glutamine amidotransferase domain	GATase_6
UHGV-1998409_5	COG	COG0449	Glucosamine 6-phosphate synthetase, contains amidotransferase and phosphosugar isomerase domains	NA
UHGV-1998409_5	Structural annotation	PF13230, MF_01931, TIGR01134, COG0034	NA	NA
UHGV-1998409_7	PHROG	phrog_3230	NA	unknown function
UHGV-1998409_7	UniRef90	UniRef90_UPI000685C3DB	NA	NA
UHGV-1998409_7	eggNOG-mapper	411473.RUMCAL_03162	NA	NA
UHGV-1998409_7	Pfam	PF07799	NA	DUF1643
UHGV-1998409_7	COG	COG4333	NA	NA
UHGV-1998409_7	Structural annotation	PF07799, COG4333	NA	NA
UHGV-1998409_8	eggNOG-mapper	411473.RUMCAL_03161	NA	NA
UHGV-1998409_9	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1998409_9	PHROG	phrog_95	integrase	integration and excision
UHGV-1998409_9	UniRef90	UniRef90_U2LFB1	Resolvase protein	NA
UHGV-1998409_9	eggNOG-mapper	411473.RUMCAL_03160	NA	NA
UHGV-1998409_9	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1998409_9	Pfam	PF07508	Recombinase	Recombinase
UHGV-1998409_9	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1998409_9	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1998409_9	Structural annotation	PF00239, PF07508, NF041201, COG1961	NA	NA
UHGV-1998409_10	UniRef90	UniRef90_UPI0004649602	NA	NA
UHGV-1998409_10	eggNOG-mapper	411473.RUMCAL_03159	NA	NA
UHGV-1998409_10	Pfam	PF06124	NA	DUF960
UHGV-1998409_10	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-1998409_10	Structural annotation	PF06124	NA	NA
UHGV-1998409_11	KOfam	K24087	rpnB; recombination-promoting nuclease RpnB [EC:3.1.21.-]	NA
UHGV-1998409_11	eggNOG-mapper	1160721.RBI_I01871	NA	NA
UHGV-1998409_11	COG	COG5464	Recombination-promoting DNA endonuclease RpnC/YadD	NA
UHGV-1998409_11	Structural annotation	PF12784, TIGR01784, COG5464	NA	NA
UHGV-1998409_13	KOfam	K07459	ybjD; putative ATP-dependent endonuclease of the OLD family	NA
UHGV-1998409_13	PHROG	phrog_14430	NA	unknown function
UHGV-1998409_13	UniRef90	UniRef90_E9S9L4	AAA_15 domain-containing protein	NA
UHGV-1998409_13	eggNOG-mapper	246199.CUS_4635	AAA ATPase domain	NA
UHGV-1998409_13	PADLOC	AAA_21	NA	NA
UHGV-1998409_13	Pfam	PF13175	AAA ATPase domain	AAA_15
UHGV-1998409_13	COG	COG3950	Predicted ATP-binding protein involved in virulence	NA
UHGV-1998409_13	Structural annotation	PF11398, MF_00365, NF041760, COG4938	NA	NA
UHGV-1998409_14	UniRef90	UniRef90_UPI000CEEBD24	geranyl transferase	NA
UHGV-1998409_14	eggNOG-mapper	622312.ROSEINA2194_00320	NA	NA
UHGV-1998409_15	PHROG	phrog_5978	NA	unknown function
UHGV-1998409_15	UniRef90	UniRef90_A0A1K1MGA7	Fic family protein	NA
UHGV-1998409_15	eggNOG-mapper	936375.HMPREF1152_1541	Filamentation induced by cAMP protein fic	NA
UHGV-1998409_15	Pfam	PF02661	Fic/DOC family	Fic
UHGV-1998409_15	COG	COG3177	Fic family protein	NA
UHGV-1998409_15	Structural annotation	PF07183, MF_01911, NF040876, COG3177	NA	NA
UHGV-1998409_16	KOfam	K07273	acm; lysozyme	NA
UHGV-1998409_16	PHROG	phrog_291	endolysin	lysis
UHGV-1998409_16	UniRef90	UniRef90_A0A3D5KVU8	Peptidase_M15_3 domain-containing protein	NA
UHGV-1998409_16	eggNOG-mapper	1341157.RF007C_02545	hydrolase, family 25	NA
UHGV-1998409_16	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-1998409_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1998409_16	COG	COG3108	NA	NA
UHGV-1998409_16	Structural annotation	PF01183, PF08291, NF007557, COG3757, COG3108	NA	NA
UHGV-1998409_17	UniRef90	UniRef90_A0A1G9Z0Q6	Helix-turn-helix	NA
UHGV-1998409_17	eggNOG-mapper	1304866.K413DRAFT_0788	Helix-turn-helix XRE-family like proteins	NA
UHGV-1998409_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1998409_17	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1998409_19	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1998409_19	UniRef90	UniRef90_UPI001D0763F2	helix-turn-helix transcriptional regulator	NA
UHGV-1998409_19	eggNOG-mapper	1304866.K413DRAFT_0788	Helix-turn-helix XRE-family like proteins	NA
UHGV-1998409_19	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1998409_19	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1998409_20	PHROG	phrog_443	holin	lysis
UHGV-1998409_20	UniRef90	UniRef90_R6R2Q3	Conserved domain protein	NA
UHGV-1998409_20	eggNOG-mapper	1298920.KI911353_gene2669	Putative lactococcus lactis phage r1t holin	NA
UHGV-1998409_20	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-1998409_20	Structural annotation	PF16945	NA	NA
UHGV-1998409_21	PHROG	phrog_4105	NA	unknown function
UHGV-1998409_21	eggNOG-mapper	592026.GCWU0000282_003290	NA	NA
UHGV-1998409_22	Structural annotation	PF11195	NA	NA
UHGV-1998409_23	PHROG	phrog_35590	NA	unknown function
UHGV-1998409_23	eggNOG-mapper	411473.RUMCAL_00613	Collagen triple helix repeat (20 copies)	NA
UHGV-1998409_23	COG	COG2931	Ca2+-binding protein, RTX toxin-related	NA
UHGV-1998409_23	Structural annotation	PF07675, NF038128	NA	NA
UHGV-1998409_24	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-1998409_24	PHROG	phrog_25979	NA	unknown function
UHGV-1998409_24	UniRef90	UniRef90_U2K692	Putative collagen triple helix repeat protein (Fragment)	NA
UHGV-1998409_24	eggNOG-mapper	411473.RUMCAL_02115	Collagen triple helix repeat (20 copies)	NA
UHGV-1998409_24	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-1998409_24	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-1998409_24	Structural annotation	PF09294	NA	NA
UHGV-1998409_25	PHROG	phrog_18805	NA	unknown function
UHGV-1998409_25	UniRef90	UniRef90_A0A3C0IHR9	Cell surface protein (Fragment)	NA
UHGV-1998409_25	eggNOG-mapper	411473.RUMCAL_03179	Leucine rich repeats (6 copies)	NA
UHGV-1998409_25	Pfam	PF13306	BspA type Leucine rich repeat region (6 copies)	LRR_5
UHGV-1998409_25	COG	COG4886	Leucine-rich repeat (LRR) protein	NA
UHGV-1998409_25	Structural annotation	PF13306, PF20747	NA	NA
UHGV-1998409_26	PHROG	phrog_538	minor tail protein	tail
UHGV-1998409_26	UniRef90	UniRef90_A0A1K1UN37	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-1998409_26	eggNOG-mapper	641112.ACOK01000113_gene2081	NA	NA
UHGV-1998409_26	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-1998409_26	Structural annotation	PF14594, TIGR01665, COG4379	NA	NA
UHGV-1998409_27	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1998409_27	UniRef90	UniRef90_U2LM27	Phage tail component protein	NA
UHGV-1998409_27	eggNOG-mapper	411473.RUMCAL_02824	NA	NA
UHGV-1998409_27	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1998409_27	COG	COG4722	Phage-related protein YomH	NA
UHGV-1998409_27	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-1998409_28	KOfam	K10421	CLIP1, RSN; CAP-Gly domain-containing linker protein 1	NA
UHGV-1998409_28	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1998409_28	UniRef90	UniRef90_R7H7A1	Phage tail tape measure protein TP901 family	NA
UHGV-1998409_28	eggNOG-mapper	1384066.JAGT01000001_gene928	Phage tail tape measure protein, TP901 family	NA
UHGV-1998409_28	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1998409_28	Pfam	PF04513	Baculovirus polyhedron envelope protein, PEP, C terminus	Baculo_PEP_C
UHGV-1998409_28	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1998409_28	COG	COG5283	Phage-related tail protein	NA
UHGV-1998409_28	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1998409_29	PHROG	phrog_3033	NA	unknown function
UHGV-1998409_29	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-1998409_29	eggNOG-mapper	411473.RUMCAL_01616	NA	NA
UHGV-1998409_30	PHROG	phrog_709	NA	unknown function
UHGV-1998409_30	eggNOG-mapper	411473.RUMCAL_01151	NA	NA
UHGV-1998409_30	Structural annotation	PF11836	NA	NA
UHGV-1998409_31	PHROG	phrog_88	major tail protein	tail
UHGV-1998409_31	UniRef90	UniRef90_U2KWM8	Phage major tail protein, phi13 family	NA
UHGV-1998409_31	eggNOG-mapper	411473.RUMCAL_01152	phage major tail protein, phi13 family	NA
UHGV-1998409_31	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1998409_31	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1998409_32	eggNOG-mapper	411473.RUMCAL_01152	phage major tail protein, phi13 family	NA
UHGV-1998409_33	PHROG	phrog_78	tail terminator	connector
UHGV-1998409_33	UniRef90	UniRef90_UPI0005C7AE81	NA	NA
UHGV-1998409_33	eggNOG-mapper	411473.RUMCAL_01153	NA	NA
UHGV-1998409_33	Structural annotation	PF20765	NA	NA
UHGV-1998409_34	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1998409_34	UniRef90	UniRef90_U2KW23	Phage protein, HK97 gp10 family	NA
UHGV-1998409_34	eggNOG-mapper	411473.RUMCAL_01154	NA	NA
UHGV-1998409_34	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1998409_34	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1998409_35	PHROG	phrog_25	head closure Hc1	connector
UHGV-1998409_35	UniRef90	UniRef90_A0A1C6CLJ6	Bacteriophage head-tail adaptor	NA
UHGV-1998409_35	eggNOG-mapper	411473.RUMCAL_03191	Phage head-tail joining protein	NA
UHGV-1998409_35	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1998409_35	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1998409_35	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1998409_35	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1998409_36	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1998409_36	UniRef90	UniRef90_U2K771	Phage DNA packaging protein	NA
UHGV-1998409_36	eggNOG-mapper	411473.RUMCAL_03192	Phage DNA packaging protein	NA
UHGV-1998409_36	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1998409_36	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1998409_36	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1998409_37	PHROG	phrog_10	major head protein	head and packaging
UHGV-1998409_37	UniRef90	UniRef90_U2KTH2	Phage major capsid protein, HK97 family	NA
UHGV-1998409_37	eggNOG-mapper	411473.RUMCAL_01623	Phage major capsid protein, HK97 family	NA
UHGV-1998409_37	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1998409_37	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1998409_37	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1998409_37	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1998409_38	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-1998409_38	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-1998409_38	UniRef90	UniRef90_A0A1C6CKN2	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-1998409_38	eggNOG-mapper	411473.RUMCAL_01624	Belongs to the peptidase S14 family	NA
UHGV-1998409_38	Pfam	PF00574	Clp protease	CLP_protease
UHGV-1998409_38	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-1998409_38	Structural annotation	PF00574, MF_00444, NF011089, COG0740	NA	NA
UHGV-1998409_39	PHROG	phrog_12	portal protein	head and packaging
UHGV-1998409_39	UniRef90	UniRef90_U2M1G3	Phage portal protein, HK97 family	NA
UHGV-1998409_39	eggNOG-mapper	411473.RUMCAL_01625	Phage portal protein, HK97 family	NA
UHGV-1998409_39	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1998409_39	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1998409_39	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1998409_39	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1998409_40	eggNOG-mapper	573061.Clocel_2436	NA	NA
UHGV-1998409_41	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1998409_41	UniRef90	UniRef90_A0A1K1YL55	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1998409_41	eggNOG-mapper	1384066.JAGT01000001_gene941	large subunit	NA
UHGV-1998409_41	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1998409_41	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1998409_41	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1998409_41	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1998409_42	PHROG	phrog_4709	NA	unknown function
UHGV-1998409_42	eggNOG-mapper	411473.RUMCAL_00553	NA	NA
UHGV-1998409_42	AcrCatalog	cluster_3300	NA	NA
UHGV-1998409_43	eggNOG-mapper	1384066.JAGT01000001_gene943	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1998409	Yes	38,578 bps	41.38%	61.89%	0.9423
UHGV-0191623	No	21,612 bps	41.80%	51.91%	0.9280
UHGV-1720565	No	13,924 bps	43.18%	33.50%	0.9678
UHGV-1793180	No	10,970 bps	44.95%	26.31%	0.9730
UHGV-1703863	No	10,828 bps	46.10%	23.91%	0.9763