vOTU-018509

Overview

vOTU representative UHGV-0194690

No. of genomes 5

Genome length 84,098 bps

Completeness 77.15% (medium-quality)

Host Phocaeicola

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-018509
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00225 › vSUBFAM-00672 › vOTU-018509
Host taxonomy	Bacteria › Bacteroidota › Bacteroidia › Bacteroidales › Bacteroidaceae › Phocaeicola
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0194690
BioSample	SAMN00792067
Genome length	84,098 bps
CheckV completeness	77.15% (medium-quality)
CheckV contamination	0.00%
CDS count	119
CDS density	88.26%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0194690_4	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0194690_4	PHROG	phrog_1	integrase	integration and excision
UHGV-0194690_4	UniRef90	UniRef90_A0A3E4Z769	Site-specific integrase	NA
UHGV-0194690_4	eggNOG-mapper	272559.BF9343_0566	Belongs to the 'phage' integrase family	NA
UHGV-0194690_4	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0194690_4	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0194690_4	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0194690_4	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0194690_4	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0194690_5	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0194690_5	PHROG	phrog_1	integrase	integration and excision
UHGV-0194690_5	UniRef90	UniRef90_UPI001959317C	site-specific integrase	NA
UHGV-0194690_5	eggNOG-mapper	357276.EL88_08320	Arm DNA-binding domain	NA
UHGV-0194690_5	Pfam	PF17293	Arm DNA-binding domain	Arm-DNA-bind_5
UHGV-0194690_5	Pfam	PF13102	Phage integrase SAM-like domain	Phage_int_SAM_5
UHGV-0194690_5	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0194690_5	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0194690_5	Structural annotation	PF00589, PF17293, PF13102, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0194690_6	UniRef90	UniRef90_A0A1L5KZW2	NA	NA
UHGV-0194690_6	Structural annotation	PF06946	NA	NA
UHGV-0194690_7	PHROG	phrog_38864	NA	unknown function
UHGV-0194690_7	Structural annotation	PF13185, MF_04104, NF041673, COG2203	NA	NA
UHGV-0194690_8	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-0194690_9	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0194690_9	PHROG	phrog_435	endolysin	lysis
UHGV-0194690_9	UniRef90	UniRef90_UPI00195E03E5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0194690_9	eggNOG-mapper	657309.BXY_08040	COG NOG32858 non supervised orthologous group	NA
UHGV-0194690_9	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0194690_9	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0194690_9	Structural annotation	PF01520, TIGR02883, COG0860	NA	NA
UHGV-0194690_10	PHROG	phrog_26448	NA	unknown function
UHGV-0194690_10	eggNOG-mapper	411901.BACCAC_01114	NA	NA
UHGV-0194690_10	Pfam	PF20647	NA	DUF6808
UHGV-0194690_10	Structural annotation	PF20647	NA	NA
UHGV-0194690_11	eggNOG-mapper	762982.HMPREF9442_01200	Bacterial dnaA protein helix-turn-helix	NA
UHGV-0194690_11	Structural annotation	PF08299, NF004688	NA	NA
UHGV-0194690_14	Structural annotation	PF10628	NA	NA
UHGV-0194690_16	eggNOG-mapper	1304885.AUEY01000004_gene991	NA	NA
UHGV-0194690_17	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0194690_17	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0194690_17	UniRef90	UniRef90_A0A3E4Z7C7	Phage tail tape measure protein	NA
UHGV-0194690_17	eggNOG-mapper	1236504.HMPREF2132_01670	tail tape measure protein, TP901 family	NA
UHGV-0194690_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0194690_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0194690_17	COG	COG5283	Phage-related tail protein	NA
UHGV-0194690_17	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0194690_20	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0194690_22	PHROG	phrog_10300	transcriptional regulator	transcription regulation
UHGV-0194690_22	UniRef90	UniRef90_UPI00195D184B	helix-turn-helix transcriptional regulator	NA
UHGV-0194690_22	eggNOG-mapper	449673.BACSTE_02219	transcriptional regulator, LuxR family	NA
UHGV-0194690_22	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0194690_22	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0194690_22	Structural annotation	PF00196, MF_00674, NF011940, COG2771	NA	NA
UHGV-0194690_23	Structural annotation	PF13989, MF_00604, TIGR01158, COG0023	NA	NA
UHGV-0194690_24	PHROG	phrog_28855	NA	unknown function
UHGV-0194690_24	UniRef90	UniRef90_UPI0019576419	CHC2 zinc finger domain-containing protein	NA
UHGV-0194690_24	eggNOG-mapper	1033732.CAHI01000035_gene2758	DNA primase	NA
UHGV-0194690_24	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0194690_24	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0194690_24	Structural annotation	PF05272, PF01807, MF_00974, MF_00016, NF005477, COG3378, COG0358	NA	NA
UHGV-0194690_25	PHROG	phrog_3848	NA	unknown function
UHGV-0194690_27	PHROG	phrog_24725	NA	unknown function
UHGV-0194690_27	UniRef90	UniRef90_B1BPP7	Gp45 protein	NA
UHGV-0194690_29	eggNOG-mapper	1280673.AUJJ01000005_gene412	NA	NA
UHGV-0194690_34	PHROG	phrog_33371	NA	unknown function
UHGV-0194690_34	eggNOG-mapper	1233951.IO90_08560	NA	NA
UHGV-0194690_35	PHROG	phrog_7314	NA	unknown function
UHGV-0194690_36	Structural annotation	PF01775, MF_00273, NF001981, COG2157	NA	NA
UHGV-0194690_40	PHROG	phrog_32914	NA	unknown function
UHGV-0194690_40	UniRef90	UniRef90_A0A416VK35	NA	NA
UHGV-0194690_44	PHROG	phrog_32914	NA	unknown function
UHGV-0194690_45	PHROG	phrog_874	NA	unknown function
UHGV-0194690_45	eggNOG-mapper	762968.HMPREF9441_00541	NA	NA
UHGV-0194690_45	Structural annotation	PF04266, MF_00684, NF003443, COG4405	NA	NA
UHGV-0194690_47	PHROG	phrog_20162	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0194690_47	eggNOG-mapper	588596.U9UGM9	HNH endonuclease	NA
UHGV-0194690_47	Structural annotation	TIGR01453	NA	NA
UHGV-0194690_48	PHROG	phrog_1374	NA	unknown function
UHGV-0194690_48	eggNOG-mapper	880526.KE386488_gene354	NA	NA
UHGV-0194690_48	Pfam	PF10269	Transmembrane Fragile-X-F protein	Tmemb_185A
UHGV-0194690_55	PHROG	phrog_9236	pyrophosphatase	other
UHGV-0194690_55	UniRef90	UniRef90_F3QSQ5	Conserved domain protein	NA
UHGV-0194690_55	eggNOG-mapper	762982.HMPREF9442_01215	NA	NA
UHGV-0194690_55	Structural annotation	PF08761, COG4508	NA	NA
UHGV-0194690_60	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-0194690_60	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-0194690_60	UniRef90	UniRef90_UPI00195CC5D1	S49 family peptidase	NA
UHGV-0194690_60	eggNOG-mapper	1236504.HMPREF2132_01855	serine-type peptidase activity	NA
UHGV-0194690_60	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-0194690_60	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-0194690_60	Structural annotation	PF01343, MF_00444, TIGR00706, COG0616	NA	NA
UHGV-0194690_61	UniRef90	UniRef90_A0A3E4Z716	Flg_new_2 domain-containing protein	NA
UHGV-0194690_61	Pfam	PF18998	Divergent InlB B-repeat domain	Flg_new_2
UHGV-0194690_61	COG	COG0457	Tetratricopeptide (TPR) repeat	NA
UHGV-0194690_61	Structural annotation	PF05065, PF18998, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0194690_62	Structural annotation	TIGR01603, COG5437	NA	NA
UHGV-0194690_63	Structural annotation	TIGR01603, COG5437	NA	NA
UHGV-0194690_65	Structural annotation	PF07894, NF010490, COG3886	NA	NA
UHGV-0194690_67	UniRef90	UniRef90_A0A3R6F6E8	NA	NA
UHGV-0194690_67	eggNOG-mapper	762982.HMPREF9442_01182	NA	NA
UHGV-0194690_67	Pfam	PF11195	NA	DUF2829
UHGV-0194690_68	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0194690_68	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0194690_68	UniRef90	UniRef90_UPI001C393C35	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0194690_68	eggNOG-mapper	1121871.AUAT01000002_gene1371	C-5 cytosine-specific DNA methylase	NA
UHGV-0194690_68	PADLOC	MTase_II_00174	Type II methyltransferase	RM
UHGV-0194690_68	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0194690_68	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0194690_68	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0194690_68	Structural annotation	PF00145, MF_00786, TIGR00675, COG0270	NA	NA
UHGV-0194690_70	eggNOG-mapper	1002367.HMPREF0673_02207	NA	NA
UHGV-0194690_70	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0194690_73	Structural annotation	PF16916, NF011238	NA	NA
UHGV-0194690_74	UniRef90	UniRef90_UPI000E5D3A8D	HIRAN domain-containing protein	NA
UHGV-0194690_75	Pfam	PF16476	NA	DUF5053
UHGV-0194690_79	UniRef90	UniRef90_A0A1I5MYP3	Fructokinase	NA
UHGV-0194690_79	eggNOG-mapper	1268240.ATFI01000007_gene423	Bacterial periplasmic substrate-binding proteins	NA
UHGV-0194690_79	COG	COG0834	ABC-type amino acid transport/signal transduction system, periplasmic component/domain	NA
UHGV-0194690_81	PHROG	phrog_6186	NA	unknown function
UHGV-0194690_81	eggNOG-mapper	999547.KI421503_gene58	NA	NA
UHGV-0194690_85	PHROG	phrog_2059	anti-restriction protein	moron, auxiliary metabolic gene and host takeover
UHGV-0194690_85	UniRef90	UniRef90_A0A3E4Z772	Antirestriction protein ArdA	NA
UHGV-0194690_85	eggNOG-mapper	1121129.KB903373_gene436	Antirestriction protein (ArdA)	NA
UHGV-0194690_85	Pfam	PF07275	Antirestriction protein (ArdA)	ArdA
UHGV-0194690_85	dbAPIS	APIS003	DNA mimetics, i.e. structurally and electrostatically imitate the B-form of DNA and thus function as competitive inhibitors of restriction enzymes.	NA
UHGV-0194690_85	COG	COG4734	Antirestriction protein ArdA	NA
UHGV-0194690_85	Structural annotation	PF07275, COG4734	NA	NA
UHGV-0194690_86	PHROG	phrog_15549	NA	unknown function
UHGV-0194690_86	UniRef90	UniRef90_A0A3E4Z6Y5	LPD29 domain-containing protein	NA
UHGV-0194690_86	eggNOG-mapper	1433126.BN938_1801	NA	NA
UHGV-0194690_86	Pfam	PF18847	Large polyvalent protein associated domain 29	LPD29
UHGV-0194690_86	Structural annotation	PF18847	NA	NA
UHGV-0194690_88	PHROG	phrog_32703	NA	unknown function
UHGV-0194690_88	UniRef90	UniRef90_C9Q001	NA	NA
UHGV-0194690_88	eggNOG-mapper	619693.HMPREF6745_2524	NA	NA
UHGV-0194690_88	Pfam	PF13708	NA	DUF4942
UHGV-0194690_88	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0194690_88	Structural annotation	PF13708, PF00398, MF_00607, NF011489, COG2263	NA	NA
UHGV-0194690_89	UniRef90	UniRef90_UPI00195CB3DC	NA	NA
UHGV-0194690_89	Pfam	PF13497	NA	DUF4121
UHGV-0194690_89	Structural annotation	PF13497	NA	NA
UHGV-0194690_97	PHROG	phrog_4068	NA	unknown function
UHGV-0194690_97	Structural annotation	PF06657	NA	NA
UHGV-0194690_99	eggNOG-mapper	1380393.JHVP01000020_gene217	NA	NA
UHGV-0194690_99	Pfam	PF03013	Pyrimidine dimer DNA glycosylase	Pyr_excise
UHGV-0194690_104	PHROG	phrog_255	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0194690_104	UniRef90	UniRef90_UPI0019578EBB	3'-5' exoribonuclease	NA
UHGV-0194690_104	eggNOG-mapper	273526.SMDB11_2007	3' exoribonuclease, RNase T-like	NA
UHGV-0194690_104	Pfam	PF16473	3'-5' exoribonuclease Rv2179c-like domain	Rv2179c-like
UHGV-0194690_104	COG	COG5018	3'-5' exonuclease KapD, inhibitor of KinA-controlled sporulation	NA
UHGV-0194690_104	Structural annotation	PF16473, MF_00157, NF005289, COG0847	NA	NA
UHGV-0194690_105	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0194690_105	PHROG	phrog_23224	DNA methyltransferase	other
UHGV-0194690_105	UniRef90	UniRef90_A0A6N3EY17	Methyltransferase	NA
UHGV-0194690_105	eggNOG-mapper	1268240.ATFI01000007_gene431	DNA methylase	NA
UHGV-0194690_105	PADLOC	MTase_II_00172	Type II methyltransferase	RM
UHGV-0194690_105	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0194690_105	COG	COG0863	DNA modification methylase	NA
UHGV-0194690_105	Structural annotation	PF01555, MF_01872, NF008572, COG0863	NA	NA
UHGV-0194690_107	PHROG	phrog_5781	NA	unknown function
UHGV-0194690_107	UniRef90	UniRef90_UPI00195DF4DC	NA	NA
UHGV-0194690_107	eggNOG-mapper	1121100.JCM6294_1073	NA	NA
UHGV-0194690_107	Pfam	PF14359	NA	DUF4406
UHGV-0194690_107	COG	COG3613	Nucleoside 2-deoxyribosyltransferase	NA
UHGV-0194690_107	Structural annotation	PF14359, MF_03036, TIGR02133, COG3613	NA	NA
UHGV-0194690_108	KOfam	K00390	cysH; phosphoadenosine phosphosulfate reductase [EC:1.8.4.8 1.8.4.10]	NA
UHGV-0194690_108	PHROG	phrog_424	phosphoadenosine phosphosulfate reductase	moron, auxiliary metabolic gene and host takeover
UHGV-0194690_108	UniRef90	UniRef90_UPI00195F0883	phosphoadenosine phosphosulfate reductase family protein	NA
UHGV-0194690_108	eggNOG-mapper	762982.HMPREF9442_01221	Phosphoadenosine phosphosulfate reductase family	NA
UHGV-0194690_108	PADLOC	BrxP_00001	BrxP	BREX
UHGV-0194690_108	Pfam	PF01507	Phosphoadenosine phosphosulfate reductase family	PAPS_reduct
UHGV-0194690_108	COG	COG0175	3'-phosphoadenosine 5'-phosphosulfate sulfotransferase (PAPS reductase)/FAD synthetase or related enzyme	NA
UHGV-0194690_108	Structural annotation	PF01507, MF_00064, NF010367, COG0175	NA	NA
UHGV-0194690_109	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0194690_109	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0194690_109	UniRef90	UniRef90_UPI00195930A4	single-stranded DNA-binding protein	NA
UHGV-0194690_109	eggNOG-mapper	272559.BF9343_2237	Single-stranded DNA-binding protein	NA
UHGV-0194690_109	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0194690_109	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0194690_109	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0194690_109	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0194690_109	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0194690_111	PHROG	phrog_1485	NA	unknown function
UHGV-0194690_111	eggNOG-mapper	908337.HMPREF9257_0552	NA	NA
UHGV-0194690_111	Pfam	PF07659	Nucleotide modification associated domain 1	DUF1599
UHGV-0194690_113	PHROG	phrog_19572	NA	unknown function
UHGV-0194690_113	UniRef90	UniRef90_A0A1Y4HTC8	Phage tail protein	NA
UHGV-0194690_113	eggNOG-mapper	484018.BACPLE_01425	COG NOG14445 non supervised orthologous group	NA
UHGV-0194690_113	Pfam	PF14902	NA	DUF4494
UHGV-0194690_113	Structural annotation	PF14902	NA	NA
UHGV-0194690_115	PHROG	phrog_2776	NA	unknown function
UHGV-0194690_115	eggNOG-mapper	1204516.I6X7M0_9CAUD	NA	NA
UHGV-0194690_117	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0194690_117	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0194690_117	UniRef90	UniRef90_UPI00195B4766	DNA cytosine methyltransferase	NA
UHGV-0194690_117	eggNOG-mapper	411477.PARMER_02067	C-5 cytosine-specific DNA methylase	NA
UHGV-0194690_117	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-0194690_117	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0194690_117	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0194690_117	Structural annotation	PF00145, MF_02100, TIGR00675, COG0270	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0194690	Yes	84,098 bps	40.01%	77.15%	0.9570
UHGV-1665275	No	22,933 bps	39.31%	21.02%	0.9658
UHGV-1634643	No	15,703 bps	40.97%	14.42%	0.9611
UHGV-1659342	No	11,189 bps	42.59%	13.28%	0.9695
UHGV-1619176	No	13,264 bps	42.71%	12.17%	0.9656