vOTU-018589

Overview

vOTU representative UHGV-0202630

No. of genomes 7

Genome length 44,443 bps

Completeness 88.56% (medium-quality)

Host Clostridia

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-018589
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00027 › vSUBFAM-00430 › vOTU-018589
Host taxonomy	Bacteria › Firmicutes A › Clostridia
Host range breadth	Class
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0202630
BioSample	SAMN00791943
Genome length	44,443 bps
CheckV completeness	88.56% (medium-quality)
CheckV contamination	0.00%
CDS count	62
CDS density	95.04%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0202630_1	Structural annotation	PF02075, MF_00034, NF000711, COG0817	NA	NA
UHGV-0202630_2	PHROG	phrog_1706	CRISPR/Cas system associated	DNA, RNA and nucleotide metabolism
UHGV-0202630_2	COG	COG1468	CRISPR/Cas system-associated exonuclease Cas4, RecB family	NA
UHGV-0202630_2	Structural annotation	PF01930, MF_03030, TIGR00372, COG5377	NA	NA
UHGV-0202630_3	KOfam	K03660	OGG1; N-glycosylase/DNA lyase [EC:3.2.2.- 4.2.99.18]	NA
UHGV-0202630_3	UniRef90	UniRef90_A0A8G0RH82	8-oxoguanine DNA glycosylase	NA
UHGV-0202630_3	eggNOG-mapper	742723.HMPREF9477_01678	8-oxoguanine DNA glycosylase, N-terminal domain	NA
UHGV-0202630_3	Pfam	PF07934	8-oxoguanine DNA glycosylase, N-terminal domain	OGG_N
UHGV-0202630_3	COG	COG0122	3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase	NA
UHGV-0202630_4	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-0202630_4	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-0202630_4	UniRef90	UniRef90_D3E3M5	CMP/dCMP deaminase	NA
UHGV-0202630_4	eggNOG-mapper	634498.mru_1286	deaminase	NA
UHGV-0202630_4	PADLOC	dCTPase	NA	NA
UHGV-0202630_4	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-0202630_4	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-0202630_4	Structural annotation	PF00383, TIGR02571, COG2131	NA	NA
UHGV-0202630_5	eggNOG-mapper	665956.HMPREF1032_00638	NA	NA
UHGV-0202630_7	KOfam	K03553	recA; recombination protein RecA	NA
UHGV-0202630_7	PHROG	phrog_97	UvsX-like recombinase	other
UHGV-0202630_7	UniRef90	UniRef90_A0A843GSV7	RECA_3 domain-containing protein	NA
UHGV-0202630_7	eggNOG-mapper	1329250.WOSG25_030820	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage	NA
UHGV-0202630_7	Pfam	PF00154	recA bacterial DNA recombination protein	RecA
UHGV-0202630_7	COG	COG0468	RecA/RadA recombinase	NA
UHGV-0202630_7	Structural annotation	PF00154, MF_00268, TIGR02012, COG0468	NA	NA
UHGV-0202630_10	KOfam	K02337	dnaE; DNA polymerase III subunit alpha [EC:2.7.7.7]	NA
UHGV-0202630_10	PHROG	phrog_405	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-0202630_10	UniRef90	UniRef90_A0A843GPT9	DNA-directed DNA polymerase	NA
UHGV-0202630_10	eggNOG-mapper	1158345.JNLL01000001_gene729	TIGRFAM DNA polymerase III, alpha subunit	NA
UHGV-0202630_10	Pfam	PF02811	PHP domain	PHP
UHGV-0202630_10	Pfam	PF07733	Bacterial DNA polymerase III alpha NTPase domain	DNA_pol3_alpha
UHGV-0202630_10	Pfam	PF17657	Bacterial DNA polymerase III alpha subunit finger domain	DNA_pol3_finger
UHGV-0202630_10	Pfam	PF14579	Helix-hairpin-helix motif	HHH_6
UHGV-0202630_10	NCBIFam	TIGR00594.1	DNA polymerase III subunit alpha	NA
UHGV-0202630_10	COG	COG0587	DNA polymerase III, alpha subunit	NA
UHGV-0202630_10	Structural annotation	PF07733, PF02811, PF17657, PF14579, MF_01902, TIGR00594, COG0587	NA	NA
UHGV-0202630_11	KOfam	K00560	thyA, TYMS; thymidylate synthase [EC:2.1.1.45]	NA
UHGV-0202630_11	PHROG	phrog_5131	thymidylate synthase	DNA, RNA and nucleotide metabolism
UHGV-0202630_11	UniRef90	UniRef90_A0A4Y5FGW2	Thymidylate synthase	NA
UHGV-0202630_11	eggNOG-mapper	1084719.G3MA60_9CAUD	Thymidylate synthase	NA
UHGV-0202630_11	Pfam	PF00303	Thymidylate synthase	Thymidylat_synt
UHGV-0202630_11	Structural annotation	PF00303, MF_01686, NF002497, COG0207	NA	NA
UHGV-0202630_12	KOfam	K00980	tagD; glycerol-3-phosphate cytidylyltransferase [EC:2.7.7.39]	NA
UHGV-0202630_12	PHROG	phrog_7878	bifunctional heptose 7-phosphate kinase/heptose 1-phosphate adenyltransferase	other
UHGV-0202630_12	UniRef90	UniRef90_A0A1V6I119	Glycerol-3-phosphate cytidylyltransferase	NA
UHGV-0202630_12	eggNOG-mapper	866536.Belba_2382	Cytidylyltransferase-like	NA
UHGV-0202630_12	Pfam	PF01467	Cytidylyltransferase-like	CTP_transf_like
UHGV-0202630_12	NCBIFam	TIGR00125.1	adenylyltransferase/cytidyltransferase family protein	NA
UHGV-0202630_12	COG	COG0615	Glycerol-3-phosphate cytidylyltransferase, cytidylyltransferase family	NA
UHGV-0202630_12	Structural annotation	PF01467, MF_02115, TIGR02199, COG0615	NA	NA
UHGV-0202630_13	KOfam	K16011	algA, xanB, rfbA, wbpW, pslB; mannose-1-phosphate guanylyltransferase / mannose-6-phosphate isomerase [EC:2.7.7.13 5.3.1.8]	NA
UHGV-0202630_13	UniRef90	UniRef90_A0A7C4ZTS1	Glyco_trans_4-like_N domain-containing protein	NA
UHGV-0202630_13	eggNOG-mapper	713587.THITH_00425	Belongs to the mannose-6-phosphate isomerase type 2 family	NA
UHGV-0202630_13	Pfam	PF01050	Mannose-6-phosphate isomerase	MannoseP_isomer
UHGV-0202630_13	COG	COG0662	Mannose-6-phosphate isomerase, cupin superfamily	NA
UHGV-0202630_14	KOfam	K22226	ahbC; Fe-coproporphyrin III synthase	NA
UHGV-0202630_14	PHROG	phrog_1802	radical SAM domain-containing protein	other
UHGV-0202630_14	UniRef90	UniRef90_A0A1G1NE03	Radical SAM core domain-containing protein	NA
UHGV-0202630_14	eggNOG-mapper	869209.Tresu_1974	radical SAM domain protein	NA
UHGV-0202630_14	PADLOC	pVip-lone	Viperins not associated with kinases	Viperin
UHGV-0202630_14	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0202630_14	COG	COG0535	Radical SAM superfamily maturase, SkfB/NifB/PqqE family	NA
UHGV-0202630_15	PHROG	phrog_761	thymidylate kinase	other
UHGV-0202630_15	Pfam	PF02223	Thymidylate kinase	Thymidylate_kin
UHGV-0202630_15	COG	COG0125	Thymidylate kinase	NA
UHGV-0202630_15	Structural annotation	PF01591, MF_00165, NF005250, COG0125	NA	NA
UHGV-0202630_16	Structural annotation	PF12643, MF_01020, TIGR03188, COG0140	NA	NA
UHGV-0202630_17	Structural annotation	PF08804	NA	NA
UHGV-0202630_18	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0202630_18	PHROG	phrog_47	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0202630_18	UniRef90	UniRef90_A0A843GN62	Toprim domain-containing protein	NA
UHGV-0202630_18	eggNOG-mapper	1408823.AXUS01000004_gene138	RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication	NA
UHGV-0202630_18	PADLOC	drt-UG29	DRT	DRT
UHGV-0202630_18	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0202630_18	Pfam	PF13155	Toprim-like	Toprim_2
UHGV-0202630_18	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0202630_18	Structural annotation	PF01807, PF13155, MF_00974, TIGR01391, COG0358	NA	NA
UHGV-0202630_20	Structural annotation	PF07498, PF09465, MF_00749, NF037951, COG1862	NA	NA
UHGV-0202630_21	eggNOG-mapper	1235799.C818_00529	NA	NA
UHGV-0202630_23	PHROG	phrog_10818	NA	unknown function
UHGV-0202630_23	eggNOG-mapper	1150989.H6WXG7_9CAUD	NA	NA
UHGV-0202630_23	Structural annotation	PF18573, PF03426, PF05475, TIGR03721, NF038128	NA	NA
UHGV-0202630_26	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0202630_26	PHROG	phrog_435	endolysin	lysis
UHGV-0202630_26	UniRef90	UniRef90_UPI001C0FB89F	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0202630_26	eggNOG-mapper	97138.C820_02438	Ami_3	NA
UHGV-0202630_26	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0202630_26	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0202630_26	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0202630_27	PHROG	phrog_13256	NA	unknown function
UHGV-0202630_31	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-0202630_34	PHROG	phrog_1220	head protein	head and packaging
UHGV-0202630_34	eggNOG-mapper	1121423.JONT01000035_gene908	COG NOG18825 non supervised orthologous group	NA
UHGV-0202630_35	PHROG	phrog_538	minor tail protein	tail
UHGV-0202630_35	UniRef90	UniRef90_UPI000947C190	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0202630_35	eggNOG-mapper	768704.Desmer_4453	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0202630_35	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0202630_35	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0202630_36	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0202630_36	UniRef90	UniRef90_A0A658JW57	Phage tail family protein	NA
UHGV-0202630_36	eggNOG-mapper	999411.HMPREF1092_00927	Phage tail protein	NA
UHGV-0202630_36	COG	COG4722	Phage-related protein YomH	NA
UHGV-0202630_36	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0202630_37	PHROG	phrog_23464	NA	unknown function
UHGV-0202630_37	eggNOG-mapper	665950.HMPREF1025_02660	phage tail tape measure protein	NA
UHGV-0202630_37	COG	COG5283	Phage-related tail protein	NA
UHGV-0202630_38	PHROG	phrog_6280	NA	unknown function
UHGV-0202630_38	UniRef90	UniRef90_A0A1J0GN47	Esterase	NA
UHGV-0202630_38	eggNOG-mapper	445335.CBN_3078	NA	NA
UHGV-0202630_39	PHROG	phrog_6686	tail tube protein	tail
UHGV-0202630_39	UniRef90	UniRef90_A0A1C6KI12	S-l_SbsC_C domain-containing protein	NA
UHGV-0202630_39	eggNOG-mapper	1304880.JAGB01000002_gene2211	NA	NA
UHGV-0202630_39	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0202630_40	PHROG	phrog_7585	NA	unknown function
UHGV-0202630_40	eggNOG-mapper	445335.CBN_3080	NA	NA
UHGV-0202630_40	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0202630_41	eggNOG-mapper	1443122.Z958_05860	NA	NA
UHGV-0202630_41	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0202630_42	PHROG	phrog_8435	NA	unknown function
UHGV-0202630_42	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0202630_43	PHROG	phrog_4020	NA	unknown function
UHGV-0202630_43	eggNOG-mapper	748727.CLJU_c31290	NA	NA
UHGV-0202630_45	PHROG	phrog_29	major head protein	head and packaging
UHGV-0202630_45	UniRef90	UniRef90_UPI00082C04A5	major capsid protein	NA
UHGV-0202630_45	eggNOG-mapper	1262449.CP6013_2085	Phage major capsid protein E	NA
UHGV-0202630_45	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-0202630_45	Structural annotation	PF03864, MF_04133, NF041162, COG4653	NA	NA
UHGV-0202630_46	PHROG	phrog_909	major head protein	head and packaging
UHGV-0202630_46	eggNOG-mapper	1158607.UAU_01759	NA	NA
UHGV-0202630_46	Structural annotation	PF02924	NA	NA
UHGV-0202630_47	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-0202630_47	UniRef90	UniRef90_W7YV79	NA	NA
UHGV-0202630_47	eggNOG-mapper	997296.PB1_16214	NA	NA
UHGV-0202630_48	KOfam	K05521	draG; ADP-ribosyl-[dinitrogen reductase] hydrolase [EC:3.2.2.24]	NA
UHGV-0202630_48	PHROG	phrog_6572	ADP-ribosylglycohydrolase	other
UHGV-0202630_48	UniRef90	UniRef90_UPI001E34568B	ADP-ribosylglycohydrolase family protein	NA
UHGV-0202630_48	eggNOG-mapper	411465.PEPMIC_00852	ADP-ribosylglycohydrolase	NA
UHGV-0202630_48	Pfam	PF03747	ADP-ribosylglycohydrolase	ADP_ribosyl_GH
UHGV-0202630_48	COG	COG1397	ADP-ribosylglycohydrolase	NA
UHGV-0202630_48	Structural annotation	PF03747, NF041672, COG1397	NA	NA
UHGV-0202630_50	KOfam	K11044	spyA; C3 family ADP-ribosyltransferase [EC:2.4.2.-]	NA
UHGV-0202630_50	PHROG	phrog_1657	head morphogenesis	head and packaging
UHGV-0202630_50	UniRef90	UniRef90_A0A349YJR5	ADPrib_exo_Tox domain-containing protein	NA
UHGV-0202630_50	eggNOG-mapper	1582149.A0A0A8WEF5_9CAUD	Phage Mu protein F like protein	NA
UHGV-0202630_50	Pfam	PF03496	ADP-ribosyltransferase exoenzyme	ADPrib_exo_Tox
UHGV-0202630_50	Structural annotation	PF03496, NF040688	NA	NA
UHGV-0202630_51	PHROG	phrog_64	portal protein	head and packaging
UHGV-0202630_51	UniRef90	UniRef90_A0A843JBG3	Phage portal protein	NA
UHGV-0202630_51	eggNOG-mapper	1121342.AUCO01000012_gene1700	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0202630_51	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0202630_51	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0202630_52	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0202630_52	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0202630_52	UniRef90	UniRef90_A0A349YI29	PBSX family phage terminase large subunit	NA
UHGV-0202630_52	eggNOG-mapper	1121342.AUCO01000012_gene1701	Phage terminase, large subunit, PBSX family	NA
UHGV-0202630_52	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0202630_52	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0202630_52	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0202630_52	COG	COG1783	Phage terminase large subunit	NA
UHGV-0202630_52	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0202630_55	Structural annotation	PF14084	NA	NA
UHGV-0202630_56	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0202630_56	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0202630_56	UniRef90	UniRef90_A0A843GQE5	Ribonuclease H	NA
UHGV-0202630_56	eggNOG-mapper	608506.COB47_1217	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-0202630_56	Pfam	PF00075	RNase H	RNase_H
UHGV-0202630_56	NCBIFam	NF001236.0	ribonuclease HI	NA
UHGV-0202630_56	COG	COG0328	Ribonuclease HI	NA
UHGV-0202630_56	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0202630_57	Structural annotation	PF10922	NA	NA
UHGV-0202630_60	Structural annotation	PF21138, NF009630, COG2375	NA	NA
UHGV-0202630_61	PHROG	phrog_2002	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0202630_61	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0202630	Yes	44,443 bps	31.42%	88.56%	0.9617
UHGV-1334944	No	44,432 bps	31.42%	88.54%	0.9577
UHGV-0127937	No	44,398 bps	31.43%	88.47%	0.9559
UHGV-1542578	No	41,875 bps	31.56%	83.48%	0.9578
UHGV-1518019	No	37,711 bps	31.83%	75.20%	0.9523
UHGV-0300469	No	26,136 bps	31.49%	51.97%	0.9740
UHGV-1653768	No	10,283 bps	29.23%	20.49%	0.9763