vOTU-018760

Overview

vOTU representative UHGV-0261988

No. of genomes 5

Genome length 28,847 bps

Completeness 84.88% (medium-quality)

Host Ruthenibacterium lactatiformans

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-018760
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vSUBFAM-05019 › vOTU-018760
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruthenibacterium › Ruthenibacterium lactatiformans
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0261988
BioSample	SAMN13241759
Genome length	28,847 bps
CheckV completeness	84.88% (medium-quality)
CheckV contamination	0.00%
CDS count	45
CDS density	94.58%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0261988_1	PHROG	phrog_757	DNA methyltransferase	other
UHGV-0261988_1	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-0261988_1	eggNOG-mapper	742733.HMPREF9469_01835	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-0261988_1	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0261988_3	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0261988_3	UniRef90	UniRef90_U2DJA0	Restriction alleviation protein, Lar family	NA
UHGV-0261988_3	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0261988_3	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-0261988_6	PHROG	phrog_244	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0261988_6	eggNOG-mapper	33035.JPJF01000122_gene2460	NA	NA
UHGV-0261988_6	Structural annotation	PF01870, MF_01490, NF040854, COG1591	NA	NA
UHGV-0261988_8	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0261988_8	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0261988_8	UniRef90	UniRef90_A0A3A6E5J4	DNA helicase	NA
UHGV-0261988_8	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0261988_8	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0261988_8	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0261988_8	COG	COG0305	Replicative DNA helicase	NA
UHGV-0261988_8	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0261988_9	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-0261988_9	UniRef90	UniRef90_A0A3A6E2X3	NA	NA
UHGV-0261988_9	eggNOG-mapper	97138.C820_00626	NA	NA
UHGV-0261988_9	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0261988_9	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0261988_9	Structural annotation	PF14297	NA	NA
UHGV-0261988_10	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0261988_10	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0261988_10	UniRef90	UniRef90_A0A0W7TNC8	Single-stranded DNA-binding protein	NA
UHGV-0261988_10	eggNOG-mapper	665956.HMPREF1032_00430	Single-stranded DNA-binding protein	NA
UHGV-0261988_10	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0261988_10	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0261988_10	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0261988_10	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0261988_10	Structural annotation	PF00436, MF_00984, NF005242, COG0629	NA	NA
UHGV-0261988_11	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0261988_11	UniRef90	UniRef90_A0A498CPV0	HNH endonuclease	NA
UHGV-0261988_11	eggNOG-mapper	1123058.KB894266_gene1536	HNH endonuclease	NA
UHGV-0261988_11	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0261988_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0261988_12	UniRef90	UniRef90_A0A2Z4Q9W9	NinB	NA
UHGV-0261988_12	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-0261988_12	Structural annotation	PF05772	NA	NA
UHGV-0261988_13	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0261988_13	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0261988_13	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0261988_13	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0261988_15	eggNOG-mapper	1235802.C823_04724	NA	NA
UHGV-0261988_16	PHROG	phrog_1123	NA	unknown function
UHGV-0261988_16	Structural annotation	PF02002, MF_01804, NF040939, COG3355	NA	NA
UHGV-0261988_17	AcrCatalog	cluster_35670	NA	NA
UHGV-0261988_17	Structural annotation	PF11998	NA	NA
UHGV-0261988_18	Structural annotation	PF12728	NA	NA
UHGV-0261988_23	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0261988_23	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0261988_23	UniRef90	UniRef90_G9YSE4	DNA-binding helix-turn-helix protein	NA
UHGV-0261988_23	eggNOG-mapper	585501.HMPREF6123_2084	Helix-turn-helix XRE-family like proteins	NA
UHGV-0261988_23	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0261988_23	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0261988_23	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0261988_24	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0261988_24	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0261988_24	UniRef90	UniRef90_A0A3A6ECX9	Helix-turn-helix domain-containing protein	NA
UHGV-0261988_24	eggNOG-mapper	665956.HMPREF1032_01654	Peptidase S24-like	NA
UHGV-0261988_24	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0261988_24	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0261988_24	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0261988_24	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0261988_25	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0261988_25	UniRef90	UniRef90_R7HFV1	Surface lipoprotein-related family protein	NA
UHGV-0261988_25	eggNOG-mapper	742818.HMPREF9451_01281	Host cell surface-exposed lipoprotein	NA
UHGV-0261988_25	Pfam	PF10400	Virulence activator alpha C-term	Vir_act_alpha_C
UHGV-0261988_25	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0261988_25	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0261988_25	Structural annotation	PF02631, MF_01114, NF001062, COG2137	NA	NA
UHGV-0261988_26	KOfam	K14059	int; integrase	NA
UHGV-0261988_26	PHROG	phrog_1	integrase	integration and excision
UHGV-0261988_26	UniRef90	UniRef90_A0A6L6LPA2	Tyrosine-type recombinase/integrase	NA
UHGV-0261988_26	eggNOG-mapper	1507.HMPREF0262_00307	Phage integrase family	NA
UHGV-0261988_26	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0261988_26	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0261988_26	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0261988_26	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0261988_28	PHROG	phrog_1129	holin	lysis
UHGV-0261988_28	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0261988_28	eggNOG-mapper	1232453.BAIF02000030_gene2527	NA	NA
UHGV-0261988_28	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0261988_28	Structural annotation	PF16079	NA	NA
UHGV-0261988_29	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-0261988_30	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-0261988_30	PHROG	phrog_7767	metallo-endopeptidase	other
UHGV-0261988_30	UniRef90	UniRef90_A0A3A6EBG8	M23 family peptidase	NA
UHGV-0261988_30	eggNOG-mapper	1041147.AUFB01000010_gene1454	Membrane proteins related to metalloendopeptidases	NA
UHGV-0261988_30	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-0261988_30	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0261988_30	Structural annotation	PF01551, NF040883, COG0739, COG5492	NA	NA
UHGV-0261988_31	PHROG	phrog_16573	NA	unknown function
UHGV-0261988_31	UniRef90	UniRef90_UPI001967E4F4	BppU family phage baseplate upper protein	NA
UHGV-0261988_31	eggNOG-mapper	1160721.RBI_I01572	NA	NA
UHGV-0261988_31	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0261988_32	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0261988_32	UniRef90	UniRef90_UPI001968120D	phage tail protein	NA
UHGV-0261988_32	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0261988_32	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0261988_32	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0261988_32	COG	COG4926	Phage-related protein	NA
UHGV-0261988_32	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0261988_33	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0261988_33	UniRef90	UniRef90_A0A1C6H6D2	Phage-related protein	NA
UHGV-0261988_33	eggNOG-mapper	1032362.F6K8S1_9CAUD	Phage tail protein	NA
UHGV-0261988_33	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0261988_34	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0261988_34	UniRef90	UniRef90_A0A1Y4R6K5	PhageMin_Tail domain-containing protein	NA
UHGV-0261988_34	eggNOG-mapper	1140001.I571_01843	phage tail tape measure protein	NA
UHGV-0261988_34	COG	COG5412	Phage-related protein	NA
UHGV-0261988_34	Structural annotation	PF20155, COG5280	NA	NA
UHGV-0261988_36	PHROG	phrog_88	major tail protein	tail
UHGV-0261988_36	UniRef90	UniRef90_G9YSC5	Phage major tail protein, phi13 family	NA
UHGV-0261988_36	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0261988_36	COG	COG5492	NA	NA
UHGV-0261988_36	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0261988_37	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0261988_37	UniRef90	UniRef90_A0A1C6FG30	Phage protein, HK97 gp10 family	NA
UHGV-0261988_37	eggNOG-mapper	908340.HMPREF9406_2573	NA	NA
UHGV-0261988_37	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0261988_37	Structural annotation	TIGR01725	NA	NA
UHGV-0261988_38	PHROG	phrog_78	tail terminator	connector
UHGV-0261988_38	eggNOG-mapper	1232446.BAIE02000002_gene829	NA	NA
UHGV-0261988_38	Structural annotation	PF05657, COG3167	NA	NA
UHGV-0261988_39	PHROG	phrog_19734	NA	unknown function
UHGV-0261988_39	UniRef90	UniRef90_A0A316NL63	Head-tail adaptor protein	NA
UHGV-0261988_39	eggNOG-mapper	1232446.BAIE02000002_gene828	NA	NA
UHGV-0261988_39	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0261988_40	PHROG	phrog_2550	NA	unknown function
UHGV-0261988_40	UniRef90	UniRef90_UPI0008717716	phage head-tail connector protein	NA
UHGV-0261988_40	eggNOG-mapper	1226322.HMPREF1545_00117	NA	NA
UHGV-0261988_40	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0261988_41	PHROG	phrog_10	major head protein	head and packaging
UHGV-0261988_41	UniRef90	UniRef90_UPI000679B959	phage major capsid protein	NA
UHGV-0261988_41	eggNOG-mapper	1226322.HMPREF1545_00116	phage major capsid protein, HK97 family	NA
UHGV-0261988_41	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0261988_41	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0261988_41	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0261988_41	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0261988_42	KOfam	K06904	NA	NA
UHGV-0261988_42	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0261988_42	UniRef90	UniRef90_A0A0D8IYC2	HK97 family phage prohead protease	NA
UHGV-0261988_42	eggNOG-mapper	1226322.HMPREF1545_00115	Phage prohead protease, HK97 family	NA
UHGV-0261988_42	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0261988_42	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0261988_42	COG	COG3740	Phage head maturation protease	NA
UHGV-0261988_42	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0261988_43	PHROG	phrog_12	portal protein	head and packaging
UHGV-0261988_43	UniRef90	UniRef90_A0A0D8IVL0	Phage portal protein	NA
UHGV-0261988_43	eggNOG-mapper	1226322.HMPREF1545_00114	Phage portal protein, HK97 family	NA
UHGV-0261988_43	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0261988_43	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0261988_43	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0261988_43	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-0261988_44	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0261988_44	UniRef90	UniRef90_A0A0D8IV16	Terminase	NA
UHGV-0261988_44	eggNOG-mapper	1226322.HMPREF1545_00113	Phage Terminase	NA
UHGV-0261988_44	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0261988_44	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0261988_44	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0261988_44	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-0261988_45	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-0261988_45	UniRef90	UniRef90_A0A1C6H6I9	Phage terminase, small subunit	NA
UHGV-0261988_45	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0261988_45	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0261988_45	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0261988	Yes	28,847 bps	45.70%	84.88%	0.9796
UHGV-1337914	No	27,330 bps	45.58%	80.42%	0.9788
UHGV-0427719	No	27,155 bps	45.63%	79.80%	0.9768
UHGV-0388470	No	16,341 bps	44.67%	47.97%	0.9823
UHGV-0392692	No	14,388 bps	45.54%	42.07%	0.9816