vOTU-018861

Overview

vOTU representative UHGV-0022052

No. of genomes 6

Genome length 57,136 bps

Completeness 73.99% (medium-quality)

Host Limivicinus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-018861
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00070 › vSUBFAM-00798 › vGENUS-01336 › vOTU-018861
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › Limivicinus
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0022052
BioSample	SAMEA4766100
Genome length	57,136 bps
CheckV completeness	73.99% (medium-quality)
CheckV contamination	0.00%
CDS count	84
CDS density	93.04%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0022052_1	PHROG	phrog_27197	NA	unknown function
UHGV-0022052_1	eggNOG-mapper	886882.PPSC2_p0363	regulation of DNA-templated transcription, elongation	NA
UHGV-0022052_1	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-0022052_1	Structural annotation	NF007410	NA	NA
UHGV-0022052_4	Structural annotation	PF12728, NF040990	NA	NA
UHGV-0022052_8	PHROG	phrog_3657	NA	unknown function
UHGV-0022052_8	eggNOG-mapper	580332.Slit_1947	NA	NA
UHGV-0022052_9	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0022052_9	UniRef90	UniRef90_A0A1Y3RPZ6	NA	NA
UHGV-0022052_9	eggNOG-mapper	1158602.I590_00670	NA	NA
UHGV-0022052_9	Pfam	PF12684	NA	DUF3799
UHGV-0022052_9	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0022052_9	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0022052_11	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0022052_11	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0022052_11	UniRef90	UniRef90_A0A3D1LE19	Single-stranded DNA-binding protein	NA
UHGV-0022052_11	eggNOG-mapper	1235797.C816_01960	Single-strand binding protein family	NA
UHGV-0022052_11	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0022052_11	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0022052_11	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0022052_11	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0022052_11	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0022052_12	PHROG	phrog_8489	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0022052_12	eggNOG-mapper	1139219.I569_00860	DnaD domain protein	NA
UHGV-0022052_12	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0022052_12	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-0022052_13	PHROG	phrog_391	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0022052_13	eggNOG-mapper	1121012.AUKX01000038_gene3753	Helix-turn-helix domain	NA
UHGV-0022052_13	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0022052_13	Structural annotation	PF13730, MF_01819, NF040939, COG5529	NA	NA
UHGV-0022052_14	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0022052_14	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0022052_14	UniRef90	UniRef90_A0A2V2CUP5	DNA helicase	NA
UHGV-0022052_14	eggNOG-mapper	1514668.JOOA01000002_gene3068	Participates in initiation and elongation during chromosome replication	NA
UHGV-0022052_14	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0022052_14	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0022052_14	COG	COG0305	Replicative DNA helicase	NA
UHGV-0022052_14	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0022052_16	KOfam	K01520	dut, DUT; dUTP pyrophosphatase [EC:3.6.1.23]	NA
UHGV-0022052_16	PHROG	phrog_135	dUTPase	DNA, RNA and nucleotide metabolism
UHGV-0022052_16	UniRef90	UniRef90_A0A6S8H8G8	Deoxyuridine 5'-triphosphate nucleotidohydrolase	NA
UHGV-0022052_16	eggNOG-mapper	1280681.AUJZ01000001_gene837	dUTPase	NA
UHGV-0022052_16	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0022052_16	Pfam	PF00692	dUTPase	dUTPase
UHGV-0022052_16	NCBIFam	TIGR00576.1	dUTP diphosphatase	NA
UHGV-0022052_16	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-0022052_20	PHROG	phrog_18716	NA	unknown function
UHGV-0022052_20	UniRef90	UniRef90_R6RP50	NA	NA
UHGV-0022052_20	eggNOG-mapper	665959.HMPREF1013_00856	NA	NA
UHGV-0022052_20	Pfam	PF18909	dATP/dGTP diphosphohydrolase, N-terminal	dGTP_diPhyd_N
UHGV-0022052_20	Structural annotation	PF18909	NA	NA
UHGV-0022052_21	UniRef90	UniRef90_UPI0019D1E2CF	FAD-dependent thymidylate synthase	NA
UHGV-0022052_21	eggNOG-mapper	1410632.JHWW01000006_gene695	NA	NA
UHGV-0022052_21	Pfam	PF02511	Thymidylate synthase complementing protein	Thy1
UHGV-0022052_21	Structural annotation	PF02511, MF_01408, TIGR02170, COG1351	NA	NA
UHGV-0022052_22	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0022052_22	UniRef90	UniRef90_A0A845R8D4	NA	NA
UHGV-0022052_22	eggNOG-mapper	349520.PPE_03059	NA	NA
UHGV-0022052_22	Pfam	PF06356	NA	DUF1064
UHGV-0022052_22	Structural annotation	PF06356, NF033179	NA	NA
UHGV-0022052_24	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0022052_24	eggNOG-mapper	1560313.A0A0D3MT14_9CAUD	NA	NA
UHGV-0022052_24	Structural annotation	PF04466, PF17289, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0022052_26	PHROG	phrog_2739	portal protein	head and packaging
UHGV-0022052_26	Structural annotation	PF07230, MF_04120, TIGR01539, COG5511	NA	NA
UHGV-0022052_28	Structural annotation	PF00210, MF_01441, NF011597, COG1528	NA	NA
UHGV-0022052_29	PHROG	phrog_3313	NA	unknown function
UHGV-0022052_29	Structural annotation	PF09979, TIGR01543, COG3740	NA	NA
UHGV-0022052_31	Structural annotation	PF03864, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0022052_32	PHROG	phrog_314	homing endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0022052_32	UniRef90	UniRef90_A0A3E2NBB0	GIY-YIG domain-containing protein	NA
UHGV-0022052_32	eggNOG-mapper	476272.RUMHYD_01755	GIY-YIG type nucleases (URI domain)	NA
UHGV-0022052_32	Pfam	PF01541	GIY-YIG catalytic domain	GIY-YIG
UHGV-0022052_32	Pfam	PF07453	NUMOD1 domain	NUMOD1
UHGV-0022052_32	NCBIFam	TIGR01453.1	group I intron endonuclease	NA
UHGV-0022052_32	COG	COG3860	NA	NA
UHGV-0022052_32	Structural annotation	PF19835, PF07453, TIGR01453, COG2827	NA	NA
UHGV-0022052_34	PHROG	phrog_4257	NA	unknown function
UHGV-0022052_36	Structural annotation	TIGR02215	NA	NA
UHGV-0022052_37	PHROG	phrog_16444	NA	unknown function
UHGV-0022052_37	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0022052_37	COG	COG5492	NA	NA
UHGV-0022052_37	Structural annotation	PF02368, PF18957, MF_04116, NF040788, COG3291, COG5614	NA	NA
UHGV-0022052_42	Structural annotation	PF06488, PF02368, TIGR01603, COG5492	NA	NA
UHGV-0022052_45	PHROG	phrog_4211	tail length tape measure protein	tail
UHGV-0022052_45	UniRef90	UniRef90_A0A2V2CTR2	Phage tail tape measure protein	NA
UHGV-0022052_45	eggNOG-mapper	397287.C807_01576	Phage-related minor tail protein	NA
UHGV-0022052_45	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0022052_45	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0022052_45	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0022052_45	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0022052_46	Structural annotation	PF05606, MF_00075, TIGR00008, COG0361	NA	NA
UHGV-0022052_47	Structural annotation	PF06995, PF02010, MF_04116, NF010681, COG3499	NA	NA
UHGV-0022052_48	PHROG	phrog_1887	tail protein	tail
UHGV-0022052_48	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-0022052_50	Structural annotation	PF21253, PF07210, NF038128, TIGR03000, COG2512	NA	NA
UHGV-0022052_54	PHROG	phrog_20388	endolysin	lysis
UHGV-0022052_54	UniRef90	UniRef90_H1CBS8	SLH domain-containing protein	NA
UHGV-0022052_54	eggNOG-mapper	552398.HMPREF0866_03091	CHAP domain	NA
UHGV-0022052_54	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0022052_54	Pfam	PF05257	CHAP domain	CHAP
UHGV-0022052_54	Pfam	PF01471	Putative peptidoglycan binding domain	PG_binding_1
UHGV-0022052_54	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0022052_54	Structural annotation	PF18013, PF01471, COG3409	NA	NA
UHGV-0022052_55	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0022052_55	PHROG	phrog_1	integrase	integration and excision
UHGV-0022052_55	UniRef90	UniRef90_G9YP38	Site-specific recombinase, phage integrase family	NA
UHGV-0022052_55	eggNOG-mapper	1283283.ATXA01000002_gene2562	Belongs to the 'phage' integrase family. XerC subfamily	NA
UHGV-0022052_55	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0022052_55	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0022052_55	Structural annotation	PF00589, PF02899, MF_01808, TIGR02225, COG4974	NA	NA
UHGV-0022052_57	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0022052_57	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0022052_57	UniRef90	UniRef90_A0A7C1A878	Phage repressor protein/antirepressor Ant	NA
UHGV-0022052_57	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0022052_57	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0022052_57	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0022052_57	Structural annotation	PF03374, PF09669, COG3645, COG3617	NA	NA
UHGV-0022052_58	PHROG	phrog_2977	anti-repressor	transcription regulation
UHGV-0022052_58	UniRef90	UniRef90_A0A658K0X2	Bro-N domain-containing protein	NA
UHGV-0022052_58	eggNOG-mapper	718252.FP2_06840	BRO family, N-terminal domain	NA
UHGV-0022052_58	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0022052_58	COG	COG3617	Prophage antirepressor	NA
UHGV-0022052_59	UniRef90	UniRef90_A0A7X5IVH3	CopG family transcriptional regulator	NA
UHGV-0022052_59	eggNOG-mapper	469604.HMPREF0946_00961	NA	NA
UHGV-0022052_59	Structural annotation	PF12651, NF041793, COG4710	NA	NA
UHGV-0022052_60	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0022052_60	UniRef90	UniRef90_UPI0005A8A2DB	Rha family transcriptional regulator	NA
UHGV-0022052_60	eggNOG-mapper	1308866.J416_09319	Phage regulatory protein	NA
UHGV-0022052_60	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0022052_60	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0022052_60	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0022052_60	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0022052_61	UniRef90	UniRef90_UPI000E47A9D7	CopG family transcriptional regulator	NA
UHGV-0022052_61	Structural annotation	PF01402, NF041793, COG4453	NA	NA
UHGV-0022052_63	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0022052_63	eggNOG-mapper	1120998.AUFC01000030_gene2202	Membrane	NA
UHGV-0022052_63	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0022052_63	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0022052_64	PHROG	phrog_1281	NA	unknown function
UHGV-0022052_64	UniRef90	UniRef90_A0A3A9BF27	NA	NA
UHGV-0022052_64	eggNOG-mapper	469604.HMPREF0946_01273	NA	NA
UHGV-0022052_64	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0022052_64	COG	COG3600	NA	NA
UHGV-0022052_64	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0022052_65	UniRef90	UniRef90_UPI001A9BE725	type II toxin-antitoxin system PemK/MazF family toxin	NA
UHGV-0022052_65	eggNOG-mapper	1122173.AXVL01000004_gene820	PemK-like, MazF-like toxin of type II toxin-antitoxin system	NA
UHGV-0022052_65	Structural annotation	PF02452, NF010262, COG2337	NA	NA
UHGV-0022052_66	PHROG	phrog_4608	anti-repressor	transcription regulation
UHGV-0022052_66	UniRef90	UniRef90_A0A373NRG3	ORF6N domain-containing protein	NA
UHGV-0022052_66	eggNOG-mapper	397290.C810_01421	ORF6C domain	NA
UHGV-0022052_66	Pfam	PF10543	ORF6N domain	ORF6N
UHGV-0022052_66	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0022052_66	Structural annotation	PF10543, TIGR02681, COG3646	NA	NA
UHGV-0022052_68	Structural annotation	COG2157	NA	NA
UHGV-0022052_69	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0022052_69	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0022052_69	UniRef90	UniRef90_A0A2M6WDQ8	Single-stranded DNA-binding protein	NA
UHGV-0022052_69	eggNOG-mapper	688269.Theth_1460	Single-stranded DNA-binding protein	NA
UHGV-0022052_69	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0022052_69	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0022052_69	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0022052_73	UniRef90	UniRef90_A0A416VIT4	XRE family transcriptional regulator	NA
UHGV-0022052_73	eggNOG-mapper	1408437.JNJN01000040_gene204	NA	NA
UHGV-0022052_73	Pfam	PF07022	Bacteriophage CI repressor helix-turn-helix domain	Phage_CI_repr
UHGV-0022052_73	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0022052_74	Structural annotation	PF14354, NF007260	NA	NA
UHGV-0022052_75	PHROG	phrog_7314	NA	unknown function
UHGV-0022052_78	PHROG	phrog_7711	NA	unknown function
UHGV-0022052_78	eggNOG-mapper	1304866.K413DRAFT_1204	NA	NA
UHGV-0022052_79	Structural annotation	PF12693	NA	NA
UHGV-0022052_80	PHROG	phrog_32703	NA	unknown function
UHGV-0022052_80	UniRef90	UniRef90_A0A2N3LE81	DNA methyltransferase	NA
UHGV-0022052_80	eggNOG-mapper	1408324.JNJK01000014_gene1949	NA	NA
UHGV-0022052_80	Pfam	PF13708	NA	DUF4942
UHGV-0022052_80	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0022052_80	Structural annotation	PF13708, PF00398, MF_00607, NF011489, COG2263	NA	NA
UHGV-0022052_81	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0022052_81	UniRef90	UniRef90_A0A1Y4IZT7	Phage repressor protein/antirepressor Ant	NA
UHGV-0022052_81	eggNOG-mapper	445972.ANACOL_01862	Phage antirepressor protein KilAC domain	NA
UHGV-0022052_81	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0022052_81	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0022052_81	COG	COG3617	Prophage antirepressor	NA
UHGV-0022052_81	Structural annotation	PF02498, PF03374, TIGR02681, COG3617	NA	NA
UHGV-0022052_83	eggNOG-mapper	240015.ACP_3195	NA	NA
UHGV-0022052_83	Structural annotation	PF06853, NF008267, COG3151	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0022052	Yes	57,136 bps	50.74%	73.99%	0.9763
UHGV-1338107	No	45,239 bps	51.29%	58.57%	0.9765
UHGV-1576270	No	21,669 bps	52.05%	28.07%	0.9791
UHGV-1694888	No	19,964 bps	52.23%	25.86%	0.9813
UHGV-0195925	No	19,690 bps	52.27%	25.51%	0.9802
UHGV-1733407	No	14,063 bps	50.73%	18.18%	0.9755