vOTU-018897

Overview

vOTU representative UHGV-1519179

No. of genomes 6

Genome length 52,896 bps

Completeness 88.04% (medium-quality)

Host Bifidobacterium

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-018897
Number of genomes	6
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00024 › vSUBFAM-00138 › vGENUS-01066 › vOTU-018897
Host taxonomy	Bacteria › Actinobacteriota › Actinomycetia › Actinomycetales › Bifidobacteriaceae › Bifidobacterium
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1519179
BioSample	NA
Genome length	52,896 bps
CheckV completeness	88.04% (medium-quality)
CheckV contamination	0.00%
CDS count	92
CDS density	87.78%
tRNA count	4
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1519179_2	UniRef90	UniRef90_A7A599	Outer membrane insertion signal domain protein	NA
UHGV-1519179_2	eggNOG-mapper	1435051.BMOU_0750	NA	NA
UHGV-1519179_5	PHROG	phrog_87	metallo-protease	other
UHGV-1519179_5	UniRef90	UniRef90_A0A1X2ZJP7	Peptidase_M78 domain-containing protein	NA
UHGV-1519179_5	eggNOG-mapper	78346.BRUM_0422	NA	NA
UHGV-1519179_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1519179_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1519179_6	PHROG	phrog_16278	HTH DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1519179_6	UniRef90	UniRef90_A0A1X2ZJG6	DNA-binding protein	NA
UHGV-1519179_6	eggNOG-mapper	158787.BSCA_0771	NA	NA
UHGV-1519179_6	Structural annotation	PF13560, MF_00535, NF041677, COG3655	NA	NA
UHGV-1519179_7	PHROG	phrog_9103	transcriptional repressor	transcription regulation
UHGV-1519179_7	UniRef90	UniRef90_A0A0A7I2H4	XRE family transcriptional regulator	NA
UHGV-1519179_7	eggNOG-mapper	1151126.AQYI01000007_gene1567	NA	NA
UHGV-1519179_7	Structural annotation	PF20432, NF000090, COG1476	NA	NA
UHGV-1519179_8	UniRef90	UniRef90_W4N9K9	Phosphoglycerate dehydrogenase	NA
UHGV-1519179_8	eggNOG-mapper	566552.BIFCAT_00894	NA	NA
UHGV-1519179_9	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1519179_9	PHROG	phrog_524	anti-repressor Ant	transcription regulation
UHGV-1519179_9	UniRef90	UniRef90_A0A1X2ZGV6	Antirepressor	NA
UHGV-1519179_9	eggNOG-mapper	566552.BIFCAT_00893	P22_AR N-terminal domain	NA
UHGV-1519179_9	Pfam	PF10547	P22_AR N-terminal domain	P22_AR_N
UHGV-1519179_9	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1519179_9	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-1519179_9	Structural annotation	PF03374, PF10547, TIGR02681, COG3617	NA	NA
UHGV-1519179_11	Structural annotation	PF20063, NF033787, COG3311	NA	NA
UHGV-1519179_12	UniRef90	UniRef90_A0A1X2ZHE3	HTH arsR-type domain-containing protein	NA
UHGV-1519179_12	Pfam	PF01022	Bacterial regulatory protein, arsR family	HTH_5
UHGV-1519179_12	Structural annotation	PF03444, MF_01177, NF040939, COG3398	NA	NA
UHGV-1519179_14	eggNOG-mapper	78346.BRUM_0416	NA	NA
UHGV-1519179_16	PHROG	phrog_412	exonuclease VIII	DNA, RNA and nucleotide metabolism
UHGV-1519179_16	UniRef90	UniRef90_A7A2M6	NA	NA
UHGV-1519179_16	eggNOG-mapper	1688.BCUN_0592	NA	NA
UHGV-1519179_16	Pfam	PF12684	NA	DUF3799
UHGV-1519179_16	Structural annotation	PF12684, MF_03030, TIGR01896, COG5377	NA	NA
UHGV-1519179_17	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1519179_17	UniRef90	UniRef90_UPI001F0FBE15	ERF family protein	NA
UHGV-1519179_17	Pfam	PF04404	ERF superfamily	ERF
UHGV-1519179_17	Structural annotation	PF04404, COG4712	NA	NA
UHGV-1519179_18	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1519179_18	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1519179_18	UniRef90	UniRef90_A7A2M4	Single-stranded DNA-binding protein	NA
UHGV-1519179_18	eggNOG-mapper	78346.BRUM_0409	Single-strand binding protein family	NA
UHGV-1519179_18	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1519179_18	NCBIFam	NF005851.0	single-stranded DNA-binding protein	NA
UHGV-1519179_18	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1519179_18	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1519179_18	Structural annotation	PF00436, MF_00984, NF005851, COG2965	NA	NA
UHGV-1519179_19	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1519179_19	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1519179_19	UniRef90	UniRef90_E0Q7H7	Helicase C-terminal domain protein	NA
UHGV-1519179_19	eggNOG-mapper	1122997.AUDD01000007_gene815	DEAD-like helicases superfamily	NA
UHGV-1519179_19	PADLOC	DpdE_00013	DpdE	DPD
UHGV-1519179_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1519179_19	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1519179_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1519179_19	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-1519179_20	KOfam	K24451	zim; modification methylase	NA
UHGV-1519179_20	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1519179_20	UniRef90	UniRef90_A7A2M2	Methyltransferase	NA
UHGV-1519179_20	eggNOG-mapper	1122997.AUDD01000007_gene814	N-4 methylation of cytosine	NA
UHGV-1519179_20	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-1519179_20	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1519179_20	COG	COG0863	DNA modification methylase	NA
UHGV-1519179_20	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1519179_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1519179_22	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1519179_22	UniRef90	UniRef90_A7A2M1	Crossover junction endodeoxyribonuclease RusA	NA
UHGV-1519179_22	eggNOG-mapper	1341695.BBOMB_1058	Endodeoxyribonuclease RusA	NA
UHGV-1519179_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1519179_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1519179_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1519179_26	PHROG	phrog_2447	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1519179_26	eggNOG-mapper	78346.BRUM_0405	NA	NA
UHGV-1519179_26	Structural annotation	PF09681, TIGR01714	NA	NA
UHGV-1519179_27	KOfam	K21507	dmt; methyltransferase [EC:2.1.1.-]	NA
UHGV-1519179_27	UniRef90	UniRef90_W4NB58	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1519179_27	eggNOG-mapper	1435051.BMOU_0801	C-5 cytosine-specific DNA methylase	NA
UHGV-1519179_27	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1519179_27	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1519179_28	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1519179_28	PHROG	phrog_16528	DNA methyltransferase	other
UHGV-1519179_28	UniRef90	UniRef90_UPI0018DB2E5E	DNA cytosine methyltransferase	NA
UHGV-1519179_28	eggNOG-mapper	1435051.BMOU_0800	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1519179_28	PADLOC	MTase_II_00058	Type II methyltransferase	RM
UHGV-1519179_28	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1519179_28	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1519179_29	PHROG	phrog_14515	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1519179_29	UniRef90	UniRef90_A0A229W0S9	Restriction endonuclease	NA
UHGV-1519179_29	eggNOG-mapper	1437605.BACT_0509	HNH endonuclease	NA
UHGV-1519179_29	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1519179_30	PHROG	phrog_236	nucleotide kinase	other
UHGV-1519179_30	UniRef90	UniRef90_A0A1X3A1Z3	NA	NA
UHGV-1519179_30	eggNOG-mapper	1680.BADO_1253	NA	NA
UHGV-1519179_30	Pfam	PF11753	NA	DUF3310
UHGV-1519179_35	PHROG	phrog_21331	NA	unknown function
UHGV-1519179_35	UniRef90	UniRef90_A0A0A7I3Q2	Peptidase	NA
UHGV-1519179_39	UniRef90	UniRef90_A0A1X3A9R1	Transposase	NA
UHGV-1519179_39	eggNOG-mapper	1435051.BMOU_0784	NA	NA
UHGV-1519179_41	Structural annotation	PF08410, NF005233, COG5515	NA	NA
UHGV-1519179_43	eggNOG-mapper	1394176.AWUO01000011_gene389	NA	NA
UHGV-1519179_43	Structural annotation	PF06319, NF033832, COG5321	NA	NA
UHGV-1519179_46	Structural annotation	PF13384	NA	NA
UHGV-1519179_50	PHROG	phrog_13728	acetyltransferase	other
UHGV-1519179_50	UniRef90	UniRef90_A0A0G9M8K5	N-acetyltransferase domain-containing protein	NA
UHGV-1519179_50	eggNOG-mapper	395494.Galf_0898	acetyltransferase	NA
UHGV-1519179_50	Pfam	PF00583	Acetyltransferase (GNAT) family	Acetyltransf_1
UHGV-1519179_50	COG	COG0454	N-acetyltransferase, GNAT superfamily (includes histone acetyltransferase HPA2)	NA
UHGV-1519179_52	PHROG	phrog_547	phosphoesterase	other
UHGV-1519179_52	UniRef90	UniRef90_A0A1X2Z7T2	Metallophosphatase	NA
UHGV-1519179_52	eggNOG-mapper	1437600.JDUI01000008_gene1252	phosphoesterase or phosphohydrolase	NA
UHGV-1519179_52	Pfam	PF00149	Calcineurin-like phosphoesterase	Metallophos
UHGV-1519179_52	COG	COG4186	NA	NA
UHGV-1519179_52	Structural annotation	PF12850, MF_00575, NF003743, COG4186	NA	NA
UHGV-1519179_57	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-1519179_57	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1519179_57	UniRef90	UniRef90_A0A1X2Z148	The helix-turn-helix motif	NA
UHGV-1519179_57	eggNOG-mapper	1435051.BMOU_1231	Helix-turn-helix XRE-family like proteins	NA
UHGV-1519179_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1519179_57	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-1519179_58	UniRef90	UniRef90_A0A1X2Z130	XRE family transcriptional regulator	NA
UHGV-1519179_58	eggNOG-mapper	401473.BDP_1637	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1519179_58	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1519179_58	Pfam	PF13560	Helix-turn-helix domain	HTH_31
UHGV-1519179_61	eggNOG-mapper	445975.COLSTE_02319	NA	NA
UHGV-1519179_62	eggNOG-mapper	469378.Ccur_02570	NA	NA
UHGV-1519179_72	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1519179_72	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-1519179_72	UniRef90	UniRef90_A0A1X2Z7Y1	HTH cro/C1-type domain-containing protein	NA
UHGV-1519179_72	eggNOG-mapper	762211.BSTEL_0947	Helix-turn-helix domain	NA
UHGV-1519179_72	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1519179_72	Structural annotation	PF13443, NF041951, COG1476	NA	NA
UHGV-1519179_74	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1519179_74	PHROG	phrog_333	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1519179_74	UniRef90	UniRef90_E0Q7D2	HNH endonuclease domain protein	NA
UHGV-1519179_74	eggNOG-mapper	1692.BMAGN_1438	HNH endonuclease	NA
UHGV-1519179_74	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1519179_75	Structural annotation	PF01844, PF09889, MF_00649	NA	NA
UHGV-1519179_76	PHROG	phrog_226	minor tail protein	tail
UHGV-1519179_76	eggNOG-mapper	566461.SSFG_01019	NA	NA
UHGV-1519179_77	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1519179_77	UniRef90	UniRef90_UPI001F0F6B49	phage terminase family protein	NA
UHGV-1519179_77	eggNOG-mapper	35760.BCHO_0844	Terminase	NA
UHGV-1519179_77	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1519179_77	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1519179_78	PHROG	phrog_104	portal protein	head and packaging
UHGV-1519179_78	UniRef90	UniRef90_A0A5M9ZHZ0	Phage portal protein	NA
UHGV-1519179_78	eggNOG-mapper	1688.BCUN_1874	NA	NA
UHGV-1519179_78	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1519179_79	PHROG	phrog_36668	NA	unknown function
UHGV-1519179_79	UniRef90	UniRef90_W6EWN9	NA	NA
UHGV-1519179_79	eggNOG-mapper	1692.BMAGN_1443	NA	NA
UHGV-1519179_79	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-1519179_80	eggNOG-mapper	35760.BCHO_0841	NA	NA
UHGV-1519179_81	PHROG	phrog_3583	head decoration	head and packaging
UHGV-1519179_81	UniRef90	UniRef90_A0A261GA15	K structural protein	NA
UHGV-1519179_81	eggNOG-mapper	1692.BMAGN_1445	NA	NA
UHGV-1519179_81	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-1519179_81	Structural annotation	PF02924	NA	NA
UHGV-1519179_82	PHROG	phrog_29	major head protein	head and packaging
UHGV-1519179_82	UniRef90	UniRef90_A0A2N0T1R7	Major capsid protein E	NA
UHGV-1519179_82	eggNOG-mapper	35760.BCHO_0839	Phage major capsid protein E	NA
UHGV-1519179_82	Pfam	PF03864	Phage major capsid protein E	Phage_cap_E
UHGV-1519179_82	Structural annotation	PF03864, MF_04133, TIGR04387, COG4653	NA	NA
UHGV-1519179_83	PHROG	phrog_36776	NA	unknown function
UHGV-1519179_83	eggNOG-mapper	1692.BMAGN_1447	NA	NA
UHGV-1519179_84	PHROG	phrog_25853	NA	unknown function
UHGV-1519179_84	UniRef90	UniRef90_A0A087AF68	Thiamine biosynthesis protein ThiS	NA
UHGV-1519179_84	eggNOG-mapper	1692.BMAGN_1448	NA	NA
UHGV-1519179_84	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1519179_85	PHROG	phrog_32608	NA	unknown function
UHGV-1519179_85	Structural annotation	PF17395	NA	NA
UHGV-1519179_86	Structural annotation	PF12691	NA	NA
UHGV-1519179_87	PHROG	phrog_117	major tail protein	tail
UHGV-1519179_87	UniRef90	UniRef90_A0A087B693	Putative phage protein gp19	NA
UHGV-1519179_87	eggNOG-mapper	1692.BMAGN_1451	NA	NA
UHGV-1519179_87	Structural annotation	PF04630, TIGR01603, COG5437	NA	NA
UHGV-1519179_88	PHROG	phrog_36579	NA	unknown function
UHGV-1519179_90	KOfam	K06240	LAMA3_5; laminin, alpha 3/5	NA
UHGV-1519179_90	PHROG	phrog_305	tail length tape measure protein	tail
UHGV-1519179_90	UniRef90	UniRef90_W6EWI6	Tail measure	NA
UHGV-1519179_90	eggNOG-mapper	1688.BCUN_1864	domain protein	NA
UHGV-1519179_90	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-1519179_91	Structural annotation	PF20195, PF20753, TIGR01633, COG4722	NA	NA
UHGV-1519179_92	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-1519179_92	UniRef90	UniRef90_A0A564S1Y3	Chromosome partition protein Smc	NA
UHGV-1519179_92	eggNOG-mapper	78346.BRUM_0385	cellulase activity	NA
UHGV-1519179_92	COG	COG4372	NA	NA
UHGV-1519179_92	Structural annotation	PF14594, PF00041, PF16323, NF033848, COG4379, COG3979, COG5456	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1519179	Yes	52,896 bps	53.65%	88.04%	0.9812
UHGV-1551559	No	30,564 bps	53.43%	48.56%	0.9809
UHGV-0134490	No	26,079 bps	53.57%	41.45%	0.9812
UHGV-1626942	No	26,079 bps	53.57%	41.45%	0.9812
UHGV-2209661	No	26,041 bps	53.54%	41.39%	0.9812
UHGV-0364966	No	23,549 bps	53.37%	37.35%	0.9812