vOTU-019421

Overview

No. of genomes 4

Genome length 27,269 bps

Completeness 67.51% (medium-quality)

Host Bifidobacterium

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-019421
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00024 › vSUBFAM-00169 › vOTU-019421
Host taxonomy	Bacteria › Actinobacteriota › Actinomycetia › Actinomycetales › Bifidobacteriaceae › Bifidobacterium
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1409429
BioSample	SAMN05414996
Genome length	27,269 bps
CheckV completeness	67.51% (medium-quality)
CheckV contamination	0.00%
CDS count	34
CDS density	93.47%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1409429_1	eggNOG-mapper	1680.BADO_1246	NA	NA
UHGV-1409429_3	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-1409429_3	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-1409429_3	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-1409429_3	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1409429_3	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-1409429_4	PHROG	phrog_104	portal protein	head and packaging
UHGV-1409429_4	UniRef90	UniRef90_A0A087DRQ5	Phage portal protein gp6-like protein	NA
UHGV-1409429_4	eggNOG-mapper	1437603.BMON_0140	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1409429_4	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1409429_4	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1409429_5	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-1409429_5	UniRef90	UniRef90_A0A8A9ICF6	CdiA_C domain-containing protein	NA
UHGV-1409429_5	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-1409429_6	PHROG	phrog_1793	head scaffolding protein	head and packaging
UHGV-1409429_6	UniRef90	UniRef90_A0A7L6B7M9	NA	NA
UHGV-1409429_6	eggNOG-mapper	1437603.BMON_0138	NA	NA
UHGV-1409429_7	PHROG	phrog_212	major head protein	head and packaging
UHGV-1409429_7	UniRef90	UniRef90_UPI001038A13F	phage capsid protein	NA
UHGV-1409429_7	eggNOG-mapper	1437603.BMON_0137	NA	NA
UHGV-1409429_7	Structural annotation	PF05065, MF_04119, NF041162, COG4653	NA	NA
UHGV-1409429_8	PHROG	phrog_15682	NA	unknown function
UHGV-1409429_9	UniRef90	UniRef90_A0A072MRM0	Head protein	NA
UHGV-1409429_10	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-1409429_10	UniRef90	UniRef90_I3BBT3	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1409429_10	eggNOG-mapper	1437603.BMON_0136	Phage protein Gp19/Gp15/Gp42	NA
UHGV-1409429_10	Pfam	PF09355	NA	Phage_Gp19
UHGV-1409429_10	Structural annotation	PF09355	NA	NA
UHGV-1409429_11	PHROG	phrog_13779	NA	unknown function
UHGV-1409429_11	UniRef90	UniRef90_UPI00192840F4	NA	NA
UHGV-1409429_11	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-1409429_11	Pfam	PF19586	NA	DUF6093
UHGV-1409429_11	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-1409429_12	PHROG	phrog_19109	NA	unknown function
UHGV-1409429_12	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-1409429_12	Structural annotation	TIGR01725	NA	NA
UHGV-1409429_13	UniRef90	UniRef90_A0A3D0PZF5	Transcriptional regulator	NA
UHGV-1409429_13	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-1409429_13	Structural annotation	PF06141	NA	NA
UHGV-1409429_14	PHROG	phrog_2491	major tail protein	tail
UHGV-1409429_14	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-1409429_14	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-1409429_14	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-1409429_15	UniRef90	UniRef90_A0A1X2YXV4	DNAase primase	NA
UHGV-1409429_15	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-1409429_15	Structural annotation	PF08890	NA	NA
UHGV-1409429_16	UniRef90	UniRef90_A0A1X2YXV5	Terminase	NA
UHGV-1409429_16	eggNOG-mapper	398513.BBNG_00857	NA	NA
UHGV-1409429_17	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1409429_17	UniRef90	UniRef90_A0A0G9MBC1	PhageMin_Tail domain-containing protein	NA
UHGV-1409429_17	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-1409429_17	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1409429_17	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1409429_17	COG	COG5283	Phage-related tail protein	NA
UHGV-1409429_17	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-1409429_18	UniRef90	UniRef90_A0A7Y0EUM5	Tail fiber protein	NA
UHGV-1409429_18	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-1409429_18	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-1409429_19	PHROG	phrog_538	minor tail protein	tail
UHGV-1409429_19	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-1409429_19	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-1409429_19	Pfam	PF11133	Head fiber protein	Phage_head_fibr
UHGV-1409429_19	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1409429_21	PHROG	phrog_9994	NA	unknown function
UHGV-1409429_21	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-1409429_21	Structural annotation	PF20747, PF08931	NA	NA
UHGV-1409429_22	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-1409429_22	Structural annotation	PF08931	NA	NA
UHGV-1409429_23	KOfam	K14059	int; integrase	NA
UHGV-1409429_23	PHROG	phrog_1	integrase	integration and excision
UHGV-1409429_23	UniRef90	UniRef90_A0A3E5HP75	Site-specific integrase	NA
UHGV-1409429_23	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-1409429_23	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1409429_23	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1409429_23	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1409429_23	Structural annotation	PF00589, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-1409429_24	PHROG	phrog_4105	NA	unknown function
UHGV-1409429_24	UniRef90	UniRef90_A0A087DGL9	Phage minor structural protein	NA
UHGV-1409429_24	eggNOG-mapper	1435051.BMOU_0219	NA	NA
UHGV-1409429_25	PHROG	phrog_6614	minor tail protein	tail
UHGV-1409429_25	eggNOG-mapper	78345.BMERY_0864	outer membrane autotransporter barrel domain protein	NA
UHGV-1409429_25	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-1409429_26	UniRef90	UniRef90_A0A3E5HPK4	NA	NA
UHGV-1409429_26	eggNOG-mapper	1218103.CIN01S_19_00460	Carbohydrate binding domain	NA
UHGV-1409429_26	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-1409429_26	Structural annotation	PF04862, NF033675, COG5156	NA	NA
UHGV-1409429_27	UniRef90	UniRef90_A0A3E5HQC6	CBM-cenC domain-containing protein	NA
UHGV-1409429_29	KOfam	K07273	acm; lysozyme	NA
UHGV-1409429_29	PHROG	phrog_291	endolysin	lysis
UHGV-1409429_29	UniRef90	UniRef90_UPI001E3B3029	LysM peptidoglycan-binding domain-containing protein	NA
UHGV-1409429_29	eggNOG-mapper	78345.BMERY_0862	Glycosyl hydrolases family 25	NA
UHGV-1409429_29	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-1409429_29	Pfam	PF01476	LysM domain	LysM
UHGV-1409429_29	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-1409429_29	Structural annotation	PF01183, TIGR02899, TIGR00683, COG3757	NA	NA
UHGV-1409429_30	PHROG	phrog_881	holin	lysis
UHGV-1409429_30	UniRef90	UniRef90_UPI001C57C615	phage holin	NA
UHGV-1409429_30	eggNOG-mapper	78345.BMERY_0861	Putative phage holin Dp-1	NA
UHGV-1409429_30	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-1409429_30	Structural annotation	PF16938	NA	NA
UHGV-1409429_31	KOfam	K14059	int; integrase	NA
UHGV-1409429_31	PHROG	phrog_1	integrase	integration and excision
UHGV-1409429_31	UniRef90	UniRef90_A0A087E4H8	Site-specific recombinase, phage integrase family	NA
UHGV-1409429_31	eggNOG-mapper	78345.BMERY_0915	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1409429_31	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1409429_31	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1409429_31	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1409429_31	Structural annotation	PF00589, PF02920, MF_01808, TIGR02224, COG4974, COG3422	NA	NA
UHGV-1409429_32	PHROG	phrog_87	metallo-protease	other
UHGV-1409429_32	UniRef90	UniRef90_UPI001C8C82FF	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1409429_32	eggNOG-mapper	1437608.BBIA_1934	IrrE N-terminal-like domain	NA
UHGV-1409429_32	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1409429_32	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-1409429_32	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1409429_34	UniRef90	UniRef90_A7A599	Outer membrane insertion signal domain protein	NA
UHGV-1409429_34	eggNOG-mapper	1435051.BMOU_0750	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1409429	Yes	27,269 bps	61.78%	67.51%	0.9744
UHGV-0146966	No	24,244 bps	62.22%	60.02%	0.9816
UHGV-0199385	No	22,889 bps	62.07%	56.64%	0.9806
UHGV-1785777	No	12,531 bps	62.17%	30.69%	0.9827