vOTU-019792

Overview

No. of genomes 4

Genome length 26,074 bps

Completeness 54.86% (medium-quality)

Host Citrobacter

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-019792
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00016 › vSUBFAM-00242 › vGENUS-08416 › vSUBGEN-61246 › vOTU-019792
Host taxonomy	Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Citrobacter
Host range breadth	Genus
Host prediction method	PHIST
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0328536
BioSample	NA
Genome length	26,074 bps
CheckV completeness	54.86% (medium-quality)
CheckV contamination	0.00%
CDS count	30
CDS density	88.13%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0328536_1	UniRef90	UniRef90_K4WLH9	IS3 ORF1 protein (Fragment)	NA
UHGV-0328536_1	eggNOG-mapper	1440052.EAKF1_ch3017c	transposase activity	NA
UHGV-0328536_1	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0328536_2	PHROG	phrog_295	tail fiber protein	tail
UHGV-0328536_2	UniRef90	UniRef90_UPI0019076682	prophage tail fiber N-terminal domain-containing protein	NA
UHGV-0328536_2	eggNOG-mapper	90371.CY43_13805	Phage Tail Collar Domain	NA
UHGV-0328536_2	Pfam	PF08400	Prophage tail fibre N-terminal	phage_tail_N
UHGV-0328536_2	Pfam	PF03406	Phage tail fibre repeat	Phage_fiber_2
UHGV-0328536_2	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0328536_2	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0328536_2	Structural annotation	PF03406, COG4675	NA	NA
UHGV-0328536_3	PHROG	phrog_31	baseplate hub protein Tal	tail
UHGV-0328536_3	UniRef90	UniRef90_A0A0D7LW44	Host specificity protein J	NA
UHGV-0328536_3	eggNOG-mapper	155864.EDL933_1844	Phage-related protein, tail component	NA
UHGV-0328536_3	Pfam	PF13550	Putative phage tail protein	Phage-tail_3
UHGV-0328536_3	Pfam	PF00041	Fibronectin type III domain	fn3
UHGV-0328536_3	Pfam	PF09327	NA	DUF1983
UHGV-0328536_3	Pfam	PF12421	Fibronectin type III protein	DUF3672
UHGV-0328536_3	COG	COG4733	Phage-related protein, tail protein J	NA
UHGV-0328536_3	Structural annotation	PF09327, PF13550, PF12421, PF16323, PF14109, NF040662, NF007507, COG4733	NA	NA
UHGV-0328536_4	PHROG	phrog_4554	tail protein	tail
UHGV-0328536_4	UniRef90	UniRef90_A0A735JPI8	Tail assembly protein	NA
UHGV-0328536_4	eggNOG-mapper	155864.EDL933_2995	Corresponds to locus_tag	NA
UHGV-0328536_4	Pfam	PF06805	Bacteriophage lambda tail assembly protein I	Lambda_tail_I
UHGV-0328536_4	COG	COG4723	Phage-related protein, tail assembly protein I	NA
UHGV-0328536_4	Structural annotation	PF06805, NF008347, COG4723	NA	NA
UHGV-0328536_5	KOfam	K21140	mec; [CysO sulfur-carrier protein]-S-L-cysteine hydrolase [EC:3.13.1.6]	NA
UHGV-0328536_5	PHROG	phrog_30	minor tail protein	tail
UHGV-0328536_5	UniRef90	UniRef90_R8X240	Phage tail fiber protein	NA
UHGV-0328536_5	eggNOG-mapper	1440052.EAKF1_ch0449c	JAB/MPN domain	NA
UHGV-0328536_5	Pfam	PF14464	Prokaryotic homologs of the JAB domain	Prok-JAB
UHGV-0328536_5	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0328536_5	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0328536_5	Structural annotation	PF14464, PF00877, NF041370, TIGR02219, COG1310, COG0791	NA	NA
UHGV-0328536_6	PHROG	phrog_4199	minor tail protein	tail
UHGV-0328536_6	UniRef90	UniRef90_A0A0D7LTI8	Tail protein	NA
UHGV-0328536_6	eggNOG-mapper	1197719.A464_1010	Phage minor tail protein L	NA
UHGV-0328536_6	Pfam	PF05100	Phage minor tail protein L	Phage_tail_L
UHGV-0328536_6	NCBIFam	TIGR01600.1	phage minor tail protein L	NA
UHGV-0328536_6	COG	COG4672	Phage tail protein	NA
UHGV-0328536_6	Structural annotation	PF05100, TIGR01600, COG4672	NA	NA
UHGV-0328536_7	PHROG	phrog_14	minor tail protein	tail
UHGV-0328536_7	UniRef90	UniRef90_A0A628N5L2	Phage tail protein	NA
UHGV-0328536_7	eggNOG-mapper	1197719.A464_1009	Phage minor tail protein	NA
UHGV-0328536_7	Pfam	PF05939	Phage minor tail protein	Phage_min_tail
UHGV-0328536_7	COG	COG4718	Phage tail protein	NA
UHGV-0328536_7	Structural annotation	PF05939, TIGR02217, COG4718	NA	NA
UHGV-0328536_8	PHROG	phrog_339	tail length tape measure protein	tail
UHGV-0328536_8	UniRef90	UniRef90_UPI001F41AF57	phage tail tape measure protein	NA
UHGV-0328536_8	eggNOG-mapper	1197719.A464_1008	tail length tape measure	NA
UHGV-0328536_8	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0328536_8	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0328536_8	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0328536_8	Structural annotation	PF20155, PF06120, TIGR02338, TIGR01541, COG5281	NA	NA
UHGV-0328536_9	PHROG	phrog_25875	tail assembly chaperone	tail
UHGV-0328536_9	UniRef90	UniRef90_A0A702W8C6	Phage tail protein	NA
UHGV-0328536_9	eggNOG-mapper	1197719.A464_1007	Phage tail assembly chaperone protein, TAC	NA
UHGV-0328536_9	Pfam	PF16462	Phage tail assembly chaperone protein, TAC	Phage_TAC_14
UHGV-0328536_9	Structural annotation	PF16462, TIGR01674	NA	NA
UHGV-0328536_10	PHROG	phrog_158	major tail protein	tail
UHGV-0328536_10	UniRef90	UniRef90_A0A0D7M1D5	Major tail shaft subunit	NA
UHGV-0328536_10	eggNOG-mapper	1197719.A464_1006	Phage tail tube protein family	NA
UHGV-0328536_10	Pfam	PF16463	Phage tail tube protein family	Phage_TTP_13
UHGV-0328536_10	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0328536_11	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0328536_11	UniRef90	UniRef90_A0A7D6Q269	HK97 gp10 family phage protein	NA
UHGV-0328536_11	eggNOG-mapper	255431.Q6UAX1_9CAUD	exonuclease activity	NA
UHGV-0328536_11	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0328536_11	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0328536_11	Structural annotation	TIGR01725	NA	NA
UHGV-0328536_12	PHROG	phrog_347	tail terminator	connector
UHGV-0328536_12	UniRef90	UniRef90_Q6UAX2	Gp10	NA
UHGV-0328536_12	eggNOG-mapper	1197719.A464_1004	NA	NA
UHGV-0328536_12	Structural annotation	PF12691	NA	NA
UHGV-0328536_13	PHROG	phrog_25	head closure Hc1	connector
UHGV-0328536_13	UniRef90	UniRef90_A0A1R0G2C9	Head-tail adaptor protein	NA
UHGV-0328536_13	eggNOG-mapper	255431.Q6UAX3_9CAUD	Phage head-tail joining protein	NA
UHGV-0328536_13	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0328536_13	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0328536_13	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0328536_14	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0328536_14	UniRef90	UniRef90_A0A0D7LW58	Phage gp6-like head-tail connector protein	NA
UHGV-0328536_14	eggNOG-mapper	573.JG24_08625	Phage gp6-like head-tail connector protein	NA
UHGV-0328536_14	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0328536_14	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0328536_14	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0328536_15	PHROG	phrog_24620	NA	unknown function
UHGV-0328536_15	UniRef90	UniRef90_S5ND32	Gp7	NA
UHGV-0328536_15	eggNOG-mapper	1197719.A464_1001	NA	NA
UHGV-0328536_16	PHROG	phrog_10	major head protein	head and packaging
UHGV-0328536_16	UniRef90	UniRef90_A0A0D7LTR1	Capsid protein	NA
UHGV-0328536_16	eggNOG-mapper	1197719.A464_1000	Phage capsid family	NA
UHGV-0328536_16	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0328536_16	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0328536_16	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0328536_16	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0328536_17	KOfam	K21511	GPC; capsid assembly protease [EC:3.4.21.-]	NA
UHGV-0328536_17	PHROG	phrog_53	head maturation protease	head and packaging
UHGV-0328536_17	UniRef90	UniRef90_A0A0N8LTU4	S49 family peptidase	NA
UHGV-0328536_17	eggNOG-mapper	573.JG24_08610	peptidase	NA
UHGV-0328536_17	Pfam	PF01343	Peptidase family S49	Peptidase_S49
UHGV-0328536_17	COG	COG0616	Periplasmic serine protease, ClpP class	NA
UHGV-0328536_17	Structural annotation	PF01343, MF_00444, TIGR00706, COG0616	NA	NA
UHGV-0328536_18	PHROG	phrog_12	portal protein	head and packaging
UHGV-0328536_18	UniRef90	UniRef90_S5MU76	Phage portal protein	NA
UHGV-0328536_18	eggNOG-mapper	1197719.A464_998	Phage portal protein	NA
UHGV-0328536_18	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0328536_18	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0328536_18	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0328536_18	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0328536_19	PHROG	phrog_502	membrane protein	moron, auxiliary metabolic gene and host takeover
UHGV-0328536_19	UniRef90	UniRef90_Q6UAX9	Gp3	NA
UHGV-0328536_19	eggNOG-mapper	255431.Q6UAX9_9CAUD	NA	NA
UHGV-0328536_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0328536_20	UniRef90	UniRef90_A0A7Z8C032	Terminase	NA
UHGV-0328536_20	eggNOG-mapper	1224136.AMFN01000024_gene37	Phage Terminase	NA
UHGV-0328536_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0328536_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0328536_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0328536_20	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0328536_21	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0328536_21	UniRef90	UniRef90_A0A3F3IKI5	Terminase	NA
UHGV-0328536_21	eggNOG-mapper	255431.Q6UAY1_9CAUD	Phage terminase, small subunit	NA
UHGV-0328536_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0328536_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0328536_22	PHROG	phrog_3983	NA	unknown function
UHGV-0328536_22	eggNOG-mapper	1005999.GLGR_1874	NA	NA
UHGV-0328536_22	Structural annotation	COG1846	NA	NA
UHGV-0328536_23	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0328536_23	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0328536_23	UniRef90	UniRef90_A0A379TPD2	Phage-like protein	NA
UHGV-0328536_23	eggNOG-mapper	255431.Q6UAS2_9CAUD	HNH endonuclease	NA
UHGV-0328536_23	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0328536_23	Structural annotation	PF01844, COG1403	NA	NA
UHGV-0328536_24	PHROG	phrog_2301	NA	unknown function
UHGV-0328536_24	UniRef90	UniRef90_A0A1R0G221	Addiction module toxin, GnsA/GnsB family	NA
UHGV-0328536_24	eggNOG-mapper	199310.c3176	Overexpression increases levels of unsaturated fatty acids and suppresses both the temperature-sensitive fabA6 mutation and cold-sensitive secG null mutation	NA
UHGV-0328536_24	Pfam	PF08178	GnsA/GnsB toxin of bacterial toxin-antitoxin system	GnsAB_toxin
UHGV-0328536_24	Structural annotation	PF08178	NA	NA
UHGV-0328536_25	KOfam	K03704	cspA; cold shock protein	NA
UHGV-0328536_25	PHROG	phrog_729	cold shock protein	other
UHGV-0328536_25	UniRef90	UniRef90_A0A0D7LTD0	Cold shock protein CspG	NA
UHGV-0328536_25	eggNOG-mapper	1114922.CIFAM_06_02930	Cold shock protein domain	NA
UHGV-0328536_25	PADLOC	retron_type_V_csd_cluster85_1	NA	Retron
UHGV-0328536_25	Pfam	PF00313	'Cold-shock' DNA-binding domain	CSD
UHGV-0328536_25	NCBIFam	NF007378.0	cold shock protein CspG	NA
UHGV-0328536_25	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0328536_25	Structural annotation	PF00313, NF007062, COG1278	NA	NA
UHGV-0328536_26	PHROG	phrog_312	Rz-like spanin	lysis
UHGV-0328536_26	UniRef90	UniRef90_UPI0015EA5B23	NA	NA
UHGV-0328536_26	eggNOG-mapper	220341.16502197	NA	NA
UHGV-0328536_26	Pfam	PF10721	NA	DUF2514
UHGV-0328536_27	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0328536_27	PHROG	phrog_7	endolysin	lysis
UHGV-0328536_27	UniRef90	UniRef90_R8X0Z2	Lysozyme	NA
UHGV-0328536_27	eggNOG-mapper	1147151.K7PM52_9CAUD	Phage lysozyme	NA
UHGV-0328536_27	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0328536_27	HAMAP	MF_04110	Endolysin	NA
UHGV-0328536_27	Structural annotation	MF_04136, COG3772	NA	NA
UHGV-0328536_28	PHROG	phrog_20	holin	lysis
UHGV-0328536_28	UniRef90	UniRef90_A0A7D7JDW8	Holin	NA
UHGV-0328536_28	eggNOG-mapper	1147144.K7P6H9_9CAUD	Pfam:Phage_holin_2_3	NA
UHGV-0328536_28	Pfam	PF16080	Bacteriophage holin family HP1	Phage_holin_2_3
UHGV-0328536_29	PHROG	phrog_1856	NA	unknown function
UHGV-0328536_29	eggNOG-mapper	90371.CY43_13950	NA	NA
UHGV-0328536_30	UniRef90	UniRef90_A0A377M0A1	IS3 family transposase orfA	NA
UHGV-0328536_30	eggNOG-mapper	332101.JIBU02000118_gene4200	Transposase	NA
UHGV-0328536_30	COG	COG2963	Transposase InsE and inactivated derivatives	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0328536	Yes	26,074 bps	51.70%	54.86%	0.9621
UHGV-0181247	No	16,677 bps	53.18%	34.31%	0.9661
UHGV-1854622	No	15,347 bps	54.51%	31.58%	0.9706
UHGV-0197630	No	12,287 bps	48.95%	24.72%	0.9747