vOTU-019837

Overview

No. of genomes 5

Genome length 27,898 bps

Completeness 64.73% (medium-quality)

Host Staphylococcus epidermidis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-019837
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes › Rockefellervirus
Taxonomy (UHGV)	vFAM-00052 › vSUBFAM-00064 › vGENUS-00192 › vOTU-019837
Host taxonomy	Bacteria › Firmicutes › Bacilli › Staphylococcales › Staphylococcaceae › Staphylococcus › Staphylococcus epidermidis
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1485941
BioSample	SAMEA2579969
Genome length	27,898 bps
CheckV completeness	64.73% (medium-quality)
CheckV contamination	0.00%
CDS count	33
CDS density	94.30%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1485941_1	UniRef90	UniRef90_UPI0009F2BDEB	tyrosine-type recombinase/integrase	NA
UHGV-1485941_1	eggNOG-mapper	435838.HMPREF0786_00904	Belongs to the 'phage' integrase family	NA
UHGV-1485941_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1485941_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1485941_2	PHROG	phrog_635	endolysin	lysis
UHGV-1485941_2	UniRef90	UniRef90_A0A5E9MA87	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1485941_2	eggNOG-mapper	1197952.I6T7G5_9CAUD	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1485941_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1485941_2	Pfam	PF05257	CHAP domain	CHAP
UHGV-1485941_3	UniRef90	UniRef90_I6TFV2	Holin	NA
UHGV-1485941_3	eggNOG-mapper	1197952.I6TFV2_9CAUD	Bacteriophage holin	NA
UHGV-1485941_3	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-1485941_3	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-1485941_3	Structural annotation	COG5546	NA	NA
UHGV-1485941_4	PHROG	phrog_134	NA	unknown function
UHGV-1485941_4	UniRef90	UniRef90_A0A5E9M9B6	XkdX family protein	NA
UHGV-1485941_4	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1485941_4	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-1485941_4	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1485941_5	PHROG	phrog_1766	tail fiber protein	tail
UHGV-1485941_5	eggNOG-mapper	435838.HMPREF0786_00853	NA	NA
UHGV-1485941_6	PHROG	phrog_18372	tail fiber protein	tail
UHGV-1485941_6	UniRef90	UniRef90_A0A8E4MQV8	BppU_N domain-containing protein	NA
UHGV-1485941_6	eggNOG-mapper	698737.SLGD_02237	GDSL-like Lipase/Acylhydrolase family	NA
UHGV-1485941_6	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1485941_6	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1485941_6	Structural annotation	PF10651	NA	NA
UHGV-1485941_7	KOfam	K23989	lytD, lytB; mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase [EC:3.2.1.96]	NA
UHGV-1485941_7	PHROG	phrog_759	tail associated cell-wall hydrolase	other
UHGV-1485941_7	UniRef90	UniRef90_D4FN15	CHAP domain protein	NA
UHGV-1485941_7	eggNOG-mapper	398839.A1BTX6_9CAUD	peptidoglycan catabolic process	NA
UHGV-1485941_7	Pfam	PF05257	CHAP domain	CHAP
UHGV-1485941_7	Pfam	PF01832	Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase	Glucosaminidase
UHGV-1485941_7	Structural annotation	PF01832, PF01510, NF008096, COG4193, COG3942, COG5632	NA	NA
UHGV-1485941_8	PHROG	phrog_2990	NA	unknown function
UHGV-1485941_8	eggNOG-mapper	279808.SH2337	NA	NA
UHGV-1485941_9	PHROG	phrog_2968	tail protein	tail
UHGV-1485941_9	eggNOG-mapper	279808.SH2338	NA	NA
UHGV-1485941_10	PHROG	phrog_134	NA	unknown function
UHGV-1485941_10	UniRef90	UniRef90_D4FN12	Putative XkdX family protein	NA
UHGV-1485941_10	eggNOG-mapper	1194526.A284_07805	Phage uncharacterised protein (Phage_XkdX)	NA
UHGV-1485941_10	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-1485941_10	Structural annotation	PF09693, TIGR01669	NA	NA
UHGV-1485941_11	PHROG	phrog_1766	tail fiber protein	tail
UHGV-1485941_11	UniRef90	UniRef90_A1BU70	Conserved phage protein	NA
UHGV-1485941_11	eggNOG-mapper	279808.SH2340	NA	NA
UHGV-1485941_12	PHROG	phrog_257	minor tail protein	tail
UHGV-1485941_12	UniRef90	UniRef90_D4FN10	BppU_N domain-containing protein	NA
UHGV-1485941_12	eggNOG-mapper	279808.SH2341	NA	NA
UHGV-1485941_12	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1485941_12	Structural annotation	PF10651, PF08931	NA	NA
UHGV-1485941_13	PHROG	phrog_4775	pre-neck appendage protein	connector
UHGV-1485941_13	UniRef90	UniRef90_A1BU68	Putative phage pre-neck appendage protein	NA
UHGV-1485941_13	eggNOG-mapper	279808.SH2342	Peptidase_G2, IMC autoproteolytic cleavage domain	NA
UHGV-1485941_13	Pfam	PF12708	Pectate lyase superfamily protein	Pectate_lyase_3
UHGV-1485941_13	Pfam	PF11962	Peptidase_G2, IMC autoproteolytic cleavage domain	Peptidase_G2
UHGV-1485941_13	COG	COG5434	Polygalacturonase	NA
UHGV-1485941_13	Structural annotation	PF11962, PF00295, TIGR03808, COG5434	NA	NA
UHGV-1485941_14	KOfam	K10804	tesA; acyl-CoA thioesterase I [EC:3.1.2.- 3.1.2.2 3.1.1.2 3.1.1.5]	NA
UHGV-1485941_14	PHROG	phrog_663	minor head protein	head and packaging
UHGV-1485941_14	UniRef90	UniRef90_I6TFU2	Virion associated hydrolase	NA
UHGV-1485941_14	eggNOG-mapper	279808.SH2343	Prophage endopeptidase tail	NA
UHGV-1485941_14	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1485941_14	Pfam	PF13472	GDSL-like Lipase/Acylhydrolase family	Lipase_GDSL_2
UHGV-1485941_14	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1485941_15	PHROG	phrog_28208	tail protein	tail
UHGV-1485941_15	UniRef90	UniRef90_A1BTW9	Conserved phage protein	NA
UHGV-1485941_15	eggNOG-mapper	279808.SH2344	Phage tail protein	NA
UHGV-1485941_16	PHROG	phrog_37657	NA	unknown function
UHGV-1485941_16	UniRef90	UniRef90_A1BU65	Putative phage tape measure protein	NA
UHGV-1485941_17	PHROG	phrog_31021	tail assembly chaperone	tail
UHGV-1485941_17	UniRef90	UniRef90_A0A2Z4WNG6	NA	NA
UHGV-1485941_17	eggNOG-mapper	279808.SH2346	NA	NA
UHGV-1485941_18	PHROG	phrog_31021	tail assembly chaperone	tail
UHGV-1485941_18	UniRef90	UniRef90_A1BTW6	Conserved phage protein	NA
UHGV-1485941_18	eggNOG-mapper	279808.SH2347	Phage tail assembly chaperone protein, TAC	NA
UHGV-1485941_18	Pfam	PF12363	Phage tail assembly chaperone protein, TAC	Phage_TAC_12
UHGV-1485941_18	Structural annotation	PF12363	NA	NA
UHGV-1485941_19	PHROG	phrog_238	major tail protein	tail
UHGV-1485941_19	UniRef90	UniRef90_A0A2T4Q024	Phage tail protein	NA
UHGV-1485941_19	eggNOG-mapper	279808.SH2348	domain, Protein	NA
UHGV-1485941_19	COG	COG5492	NA	NA
UHGV-1485941_19	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1485941_20	PHROG	phrog_176	tail terminator	connector
UHGV-1485941_20	UniRef90	UniRef90_A0A5R1C3F0	NA	NA
UHGV-1485941_20	eggNOG-mapper	106284.Q9FZZ6_9CAUD	NA	NA
UHGV-1485941_20	Pfam	PF11367	NA	DUF3168
UHGV-1485941_21	UniRef90	UniRef90_UPI001CB7AE7F	HK97 gp10 family phage protein	NA
UHGV-1485941_21	eggNOG-mapper	1405498.SSIM_04840	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1485941_22	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1485941_22	UniRef90	UniRef90_Q4ZBR0	ORF019	NA
UHGV-1485941_22	eggNOG-mapper	1159488.SEQMU2_01825	NA	NA
UHGV-1485941_22	Pfam	PF21817	CapR homology domain	CapR
UHGV-1485941_23	UniRef90	UniRef90_A0A7I0AW18	HK97 gp10 family phage protein	NA
UHGV-1485941_23	eggNOG-mapper	1141106.CAIB01000278_gene2575	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1485941_23	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1485941_24	UniRef90	UniRef90_I6SMK9	Head tail adaptor	NA
UHGV-1485941_24	eggNOG-mapper	1280.SAXN108_1927	NA	NA
UHGV-1485941_24	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1485941_24	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1485941_25	PHROG	phrog_1161	head-tail adaptor	connector
UHGV-1485941_25	UniRef90	UniRef90_A0A0M2NNW2	Phage capsid and scaffold	NA
UHGV-1485941_25	eggNOG-mapper	279808.SH2352	NA	NA
UHGV-1485941_25	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1485941_25	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1485941_26	PHROG	phrog_390	Arc-like repressor	transcription regulation
UHGV-1485941_26	UniRef90	UniRef90_A1BU57	Rho_N domain-containing protein	NA
UHGV-1485941_26	eggNOG-mapper	1197953.I6T7M8_9CAUD	DNA-dependent transcription, termination	NA
UHGV-1485941_26	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1485941_26	Structural annotation	PF07498	NA	NA
UHGV-1485941_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-1485941_27	UniRef90	UniRef90_A0A5B2YT70	N4-gp56 family major capsid protein	NA
UHGV-1485941_27	eggNOG-mapper	1197953.I6TG23_9CAUD	peptidase activity	NA
UHGV-1485941_27	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1485941_27	Structural annotation	PF19821, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1485941_28	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1485941_28	UniRef90	UniRef90_UPI00024E134D	phage scaffolding protein	NA
UHGV-1485941_28	eggNOG-mapper	320843.Q4ZBR6_9CAUD	Phage minor structural protein GP20	NA
UHGV-1485941_28	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1485941_28	Structural annotation	PF06810	NA	NA
UHGV-1485941_29	PHROG	phrog_2881	dCMP hydroxymethylase	DNA, RNA and nucleotide metabolism
UHGV-1485941_29	UniRef90	UniRef90_A0A0M2NR64	Phage tail length tape-measure protein	NA
UHGV-1485941_30	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1485941_30	UniRef90	UniRef90_A1BU54	Putative phage head protein	NA
UHGV-1485941_30	eggNOG-mapper	1280.SAXN108_1933	Phage Mu protein F like protein	NA
UHGV-1485941_30	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1485941_30	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1485941_30	COG	COG2369	NA	NA
UHGV-1485941_30	Structural annotation	PF04233, TIGR01641	NA	NA
UHGV-1485941_31	PHROG	phrog_64	portal protein	head and packaging
UHGV-1485941_31	UniRef90	UniRef90_I6TFS7	Portal protein	NA
UHGV-1485941_31	eggNOG-mapper	1405498.SSIM_04875	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1485941_31	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1485941_31	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1485941_31	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-1485941_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1485941_32	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1485941_32	UniRef90	UniRef90_I6SAS6	Terminase, large subunit	NA
UHGV-1485941_32	eggNOG-mapper	398839.A1BTV3_9CAUD	Phage terminase large subunit	NA
UHGV-1485941_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1485941_32	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1485941_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1485941_32	HAMAP	MF_04145	Terminase, large subunit	NA
UHGV-1485941_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1485941_33	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1485941_33	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1485941_33	UniRef90	UniRef90_A1BU50	Putative small terminase subunit	NA
UHGV-1485941_33	eggNOG-mapper	320840.Q4ZCF3_9CAUD	Terminase small subunit	NA
UHGV-1485941_33	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1485941_33	Structural annotation	PF03592, COG3728	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1485941	Yes	27,898 bps	35.57%	64.73%	0.9817
UHGV-1393541	No	29,537 bps	35.29%	68.53%	0.9813
UHGV-0076719	No	27,898 bps	35.57%	64.73%	0.9817
UHGV-0182958	No	19,250 bps	34.73%	44.73%	0.9715
UHGV-2208423	No	11,272 bps	34.87%	26.18%	0.9809