vOTU-020003

Overview

No. of genomes 4

Genome length 23,982 bps

Completeness 60.48% (medium-quality)

Host Lacticaseibacillus paracasei

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-020003
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00011 › vSUBFAM-00315 › vOTU-020003
Host taxonomy	Bacteria › Firmicutes › Bacilli › Lactobacillales › Lactobacillaceae › Lacticaseibacillus › Lacticaseibacillus paracasei
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0071676
BioSample	SAMEA2579965
Genome length	23,982 bps
CheckV completeness	60.48% (medium-quality)
CheckV contamination	0.00%
CDS count	26
CDS density	93.51%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0071676_2	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071676_2	UniRef90	UniRef90_A0A829H6Y2	HNH endonuclease family protein	NA
UHGV-0071676_2	eggNOG-mapper	212035.YL245_MIMIV	HNH endonuclease	NA
UHGV-0071676_2	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-0071676_2	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0071676_4	eggNOG-mapper	568703.LGG_01542	NA	NA
UHGV-0071676_5	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0071676_5	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0071676_5	UniRef90	UniRef90_UPI00137739B8	single-stranded DNA-binding protein	NA
UHGV-0071676_5	eggNOG-mapper	1423732.BALS01000055_gene2723	Single-strand binding protein family	NA
UHGV-0071676_5	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0071676_5	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0071676_5	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0071676_5	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0071676_6	PHROG	phrog_25061	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0071676_6	UniRef90	UniRef90_A0A829H7N3	Phage-related HNH nuclease	NA
UHGV-0071676_6	eggNOG-mapper	568703.LGG_01540	HNH nucleases	NA
UHGV-0071676_6	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0071676_6	Structural annotation	PF05766	NA	NA
UHGV-0071676_10	PHROG	phrog_1071	DNA methyltransferase	other
UHGV-0071676_10	UniRef90	UniRef90_A0A829H8G6	NA	NA
UHGV-0071676_10	eggNOG-mapper	386043.lwe1202	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0071676_10	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0071676_11	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0071676_11	UniRef90	UniRef90_A0A7S7JGC6	Phage terminase small subunit	NA
UHGV-0071676_11	eggNOG-mapper	568703.LGG_01536	Phage terminase, small subunit	NA
UHGV-0071676_11	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0071676_11	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0071676_11	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0071676_11	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0071676_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0071676_12	UniRef90	UniRef90_A0A7S7JHB8	Phage terminase large subunit	NA
UHGV-0071676_12	eggNOG-mapper	568703.LGG_01535	Phage Terminase	NA
UHGV-0071676_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0071676_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0071676_12	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0071676_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-0071676_13	UniRef90	UniRef90_A0A5R8LK59	Phage portal protein	NA
UHGV-0071676_13	eggNOG-mapper	568703.LGG_01534	Phage portal protein	NA
UHGV-0071676_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0071676_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0071676_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0071676_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0071676_14	KOfam	K06904	NA	NA
UHGV-0071676_14	PHROG	phrog_2263	major head protein	head and packaging
UHGV-0071676_14	UniRef90	UniRef90_A0A0E2BQL6	NA	NA
UHGV-0071676_14	eggNOG-mapper	568703.LGG_01533	Phage capsid family	NA
UHGV-0071676_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0071676_14	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0071676_14	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0071676_14	COG	COG3740	Phage head maturation protease	NA
UHGV-0071676_14	Structural annotation	PF04586, PF05065, MF_04119, TIGR01554, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0071676_15	UniRef90	UniRef90_A0A7S7FP74	NA	NA
UHGV-0071676_15	eggNOG-mapper	1423732.BALS01000063_gene2223	NA	NA
UHGV-0071676_15	Structural annotation	TIGR01560	NA	NA
UHGV-0071676_16	UniRef90	UniRef90_A0A5R8LK65	Head-tail adaptor protein	NA
UHGV-0071676_16	eggNOG-mapper	1423732.BALS01000063_gene2224	Phage head-tail joining protein	NA
UHGV-0071676_16	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0071676_16	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0071676_16	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0071676_17	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0071676_17	UniRef90	UniRef90_UPI0011582C9F	HK97 gp10 family phage protein	NA
UHGV-0071676_17	eggNOG-mapper	1423732.BALS01000063_gene2225	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0071676_17	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0071676_17	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0071676_17	Structural annotation	PF05069, TIGR01725	NA	NA
UHGV-0071676_18	PHROG	phrog_1217	tail protein	tail
UHGV-0071676_18	UniRef90	UniRef90_UPI0011582DF8	NA	NA
UHGV-0071676_18	eggNOG-mapper	1423732.BALS01000063_gene2226	NA	NA
UHGV-0071676_18	Pfam	PF05657	NA	DUF806
UHGV-0071676_18	Structural annotation	PF05657, COG5003	NA	NA
UHGV-0071676_19	PHROG	phrog_88	major tail protein	tail
UHGV-0071676_19	UniRef90	UniRef90_A0A510WKC3	Small major structural protein	NA
UHGV-0071676_19	eggNOG-mapper	1423732.BALS01000063_gene2227	Phage tail tube protein	NA
UHGV-0071676_19	Pfam	PF04630	Phage tail tube protein	Phage_TTP_1
UHGV-0071676_19	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0071676_20	PHROG	phrog_1346	tail protein	tail
UHGV-0071676_20	UniRef90	UniRef90_A0A829H735	Putative phage tail protein	NA
UHGV-0071676_20	eggNOG-mapper	1423732.BALS01000063_gene2228	Phage tail assembly chaperone proteins, TAC	NA
UHGV-0071676_20	Pfam	PF06896	Phage tail assembly chaperone proteins, TAC	Phage_TAC_3
UHGV-0071676_20	Structural annotation	PF06896	NA	NA
UHGV-0071676_21	PHROG	phrog_2629	NA	unknown function
UHGV-0071676_21	UniRef90	UniRef90_S2QS31	NA	NA
UHGV-0071676_21	eggNOG-mapper	1423732.BALS01000063_gene2229	NA	NA
UHGV-0071676_22	PHROG	phrog_21157	minor tail protein	tail
UHGV-0071676_22	eggNOG-mapper	1423732.BALS01000132_gene398	Phage tail tape measure protein TP901	NA
UHGV-0071676_22	COG	COG5283	Phage-related tail protein	NA
UHGV-0071676_23	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0071676_23	UniRef90	UniRef90_UPI000BC2D8F7	tape measure protein	NA
UHGV-0071676_23	eggNOG-mapper	1122147.AUEH01000011_gene2115	Phage tail tape measure protein TP901	NA
UHGV-0071676_23	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-0071676_23	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-0071676_23	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-0071676_23	Structural annotation	PF20155, TIGR01760, NF012014, COG3941, COG3953	NA	NA
UHGV-0071676_24	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-0071676_24	UniRef90	UniRef90_UPI00069D6CF8	phage tail family protein	NA
UHGV-0071676_24	eggNOG-mapper	39103.U5U775_9CAUD	Phage tail protein	NA
UHGV-0071676_24	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0071676_24	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0071676_24	Structural annotation	PF05709, PF03388, TIGR01633, NF041449, NF033675, COG4722, COG3506	NA	NA
UHGV-0071676_25	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-0071676_25	UniRef90	UniRef90_UPI0003433B16	phage tail protein	NA
UHGV-0071676_25	eggNOG-mapper	51369.Q9T0W6_9CAUD	peptidoglycan catabolic process	NA
UHGV-0071676_25	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0071676_25	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0071676_25	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0071676_26	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0071676_26	PHROG	phrog_10693	host range and adsorption protein	moron, auxiliary metabolic gene and host takeover
UHGV-0071676_26	UniRef90	UniRef90_UPI000FF112BE	phage tail protein	NA
UHGV-0071676_26	eggNOG-mapper	568703.LGG_01523	cellulase activity	NA
UHGV-0071676_26	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0071676_26	Pfam	PF21470	Minor structural protein 5-like, C-terminal domain	BppU-like_C
UHGV-0071676_26	COG	COG4733	Phage-related protein, tail protein J	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0071676	Yes	23,982 bps	42.86%	60.48%	0.9736
UHGV-0191103	No	25,044 bps	42.35%	63.26%	0.9702
UHGV-1511031	No	21,035 bps	42.32%	53.13%	0.9769
UHGV-1423103	No	20,984 bps	42.54%	52.73%	0.9757