vOTU-020054

Overview

vOTU representative UHGV-0194245

No. of genomes 4

Genome length 34,725 bps

Completeness 73.64% (medium-quality)

Host Clostridium neonatale

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-020054
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vOTU-020054
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Clostridiales › Clostridiaceae › Clostridium › Clostridium neonatale
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0194245
BioSample	SAMN05827054
Genome length	34,725 bps
CheckV completeness	73.64% (medium-quality)
CheckV contamination	0.00%
CDS count	52
CDS density	89.49%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0194245_1	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0194245_1	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0194245_1	UniRef90	UniRef90_A0A3P6JP74	Site-specific DNA-methyltransferase (adenine-specific)	NA
UHGV-0194245_1	eggNOG-mapper	1196322.A370_05724	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0194245_1	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0194245_1	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0194245_1	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0194245_1	COG	COG0338	DNA-adenine methylase	NA
UHGV-0194245_1	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0194245_2	PHROG	phrog_1863	NA	unknown function
UHGV-0194245_2	UniRef90	UniRef90_UPI001F223E8B	hemolysin XhlA family protein	NA
UHGV-0194245_2	eggNOG-mapper	1226322.HMPREF1545_04027	NA	NA
UHGV-0194245_3	PHROG	phrog_36209	holin	lysis
UHGV-0194245_3	UniRef90	UniRef90_A0A7Y9A9R6	Chromosome segregation ATPase	NA
UHGV-0194245_3	eggNOG-mapper	1122925.KB895376_gene419	NA	NA
UHGV-0194245_4	KOfam	K07273	acm; lysozyme	NA
UHGV-0194245_4	PHROG	phrog_6219	endolysin	lysis
UHGV-0194245_4	UniRef90	UniRef90_A0A3P6JZ30	Lysozyme	NA
UHGV-0194245_4	eggNOG-mapper	290402.Cbei_0931	family 25	NA
UHGV-0194245_4	Pfam	PF19127	Choline-binding repeat	Choline_bind_3
UHGV-0194245_4	Pfam	PF01473	Putative cell wall binding repeat	Choline_bind_1
UHGV-0194245_4	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0194245_4	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0194245_5	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-0194245_5	UniRef90	UniRef90_A0A3P6JPX5	Putative prophage LambdaCh01, transcriptional regulator	NA
UHGV-0194245_5	eggNOG-mapper	1415774.U728_1274	Helix-turn-helix XRE-family like proteins	NA
UHGV-0194245_5	COG	COG1813	Archaeal ribosome-binding protein aMBF1, putative translation factor, contains Zn-ribbon and HTH domains	NA
UHGV-0194245_6	eggNOG-mapper	632245.CLP_2948	NA	NA
UHGV-0194245_8	KOfam	K18640	parM, stbA; plasmid segregation protein ParM	NA
UHGV-0194245_8	PHROG	phrog_691	partition protein	DNA, RNA and nucleotide metabolism
UHGV-0194245_8	UniRef90	UniRef90_UPI001B384BD0	ParM/StbA family protein	NA
UHGV-0194245_8	eggNOG-mapper	1280689.AUJC01000011_gene1499	cell division	NA
UHGV-0194245_8	Pfam	PF17989	Actin like proteins N terminal domain	ALP_N
UHGV-0194245_8	COG	COG0849	Cell division ATPase FtsA	NA
UHGV-0194245_8	Structural annotation	PF06723, MF_02207, NF010498, COG1077	NA	NA
UHGV-0194245_10	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0194245_10	UniRef90	UniRef90_UPI0018C576A5	DnaD domain protein	NA
UHGV-0194245_10	eggNOG-mapper	1280689.AUJC01000011_gene1501	DnaD domain protein	NA
UHGV-0194245_10	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0194245_10	Structural annotation	PF08679, MF_01911, NF033788, COG1733	NA	NA
UHGV-0194245_11	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0194245_11	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0194245_11	UniRef90	UniRef90_UPI001B39B6A6	AAA family ATPase	NA
UHGV-0194245_11	eggNOG-mapper	1280689.AUJC01000001_gene1994	NA	NA
UHGV-0194245_11	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0194245_11	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0194245_11	COG	COG0305	Replicative DNA helicase	NA
UHGV-0194245_11	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0194245_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0194245_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0194245_12	UniRef90	UniRef90_UPI001B3761DB	single-stranded DNA-binding protein	NA
UHGV-0194245_12	eggNOG-mapper	290402.Cbei_5085	Single-stranded DNA-binding protein	NA
UHGV-0194245_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0194245_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0194245_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0194245_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0194245_12	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0194245_18	KOfam	K08984	yjdF; putative membrane protein	NA
UHGV-0194245_18	UniRef90	UniRef90_A0A3P6K2K2	Sodium-glucose/galactose cotransporter	NA
UHGV-0194245_18	eggNOG-mapper	1415774.U728_1265	NA	NA
UHGV-0194245_18	Pfam	PF09997	NA	DUF2238
UHGV-0194245_18	COG	COG3647	NA	NA
UHGV-0194245_19	eggNOG-mapper	536233.CLO_0512	NA	NA
UHGV-0194245_25	PHROG	phrog_229	MazG-like pyrophosphatase	other
UHGV-0194245_25	UniRef90	UniRef90_A0A3P6JZV8	MazG family protein	NA
UHGV-0194245_25	eggNOG-mapper	537007.BLAHAN_05009	MazG nucleotide pyrophosphohydrolase	NA
UHGV-0194245_25	Pfam	PF03819	MazG nucleotide pyrophosphohydrolase domain	MazG
UHGV-0194245_25	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-0194245_26	UniRef90	UniRef90_A0A3P6KFC3	RNA polymerase sigma factor, sigma-70 family	NA
UHGV-0194245_27	PHROG	phrog_9628	NA	unknown function
UHGV-0194245_27	UniRef90	UniRef90_A0A3P6KVC8	Transcriptional regulator	NA
UHGV-0194245_27	eggNOG-mapper	536233.CLO_0876	NA	NA
UHGV-0194245_27	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-0194245_27	Structural annotation	PF06056, COG2771	NA	NA
UHGV-0194245_28	PHROG	phrog_15827	NA	unknown function
UHGV-0194245_28	UniRef90	UniRef90_A0A3P6JPY1	Zn-finger containing protein	NA
UHGV-0194245_28	eggNOG-mapper	1280689.AUJC01000011_gene1511	DNA-directed 5'-3' RNA polymerase activity	NA
UHGV-0194245_28	COG	COG1996	DNA-directed RNA polymerase, subunit RPC12/RpoP, contains C4-type Zn-finger	NA
UHGV-0194245_28	Structural annotation	PF09723, TIGR02605, COG1996	NA	NA
UHGV-0194245_29	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-0194245_29	PHROG	phrog_216	integrase	integration and excision
UHGV-0194245_29	UniRef90	UniRef90_A0A3P6KJF1	Phage integrase family protein	NA
UHGV-0194245_29	eggNOG-mapper	1211817.CCAT010000007_gene1044	integrase family	NA
UHGV-0194245_29	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0194245_29	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0194245_29	Structural annotation	PF00589, MF_02055, NF040815, COG4973	NA	NA
UHGV-0194245_30	PHROG	phrog_57	terminase small subunit	head and packaging
UHGV-0194245_30	UniRef90	UniRef90_A0A1H8VSK7	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0194245_30	eggNOG-mapper	935948.KE386495_gene1192	transposase activity	NA
UHGV-0194245_30	COG	COG4220	Phage DNA packaging protein, Nu1 subunit of terminase	NA
UHGV-0194245_30	Structural annotation	PF07471, COG4220	NA	NA
UHGV-0194245_31	KOfam	K21512	gpA; terminase, large subunit [EC:3.1.21.4]	NA
UHGV-0194245_31	PHROG	phrog_15	terminase large subunit	head and packaging
UHGV-0194245_31	UniRef90	UniRef90_A0A3P6KBQ4	Phage terminase GpA	NA
UHGV-0194245_31	eggNOG-mapper	935948.KE386495_gene1191	Phage terminase large subunit (GpA)	NA
UHGV-0194245_31	Pfam	PF05876	Phage terminase large subunit gpA, ATPase domain	GpA_ATPase
UHGV-0194245_31	Pfam	PF20454	Terminase large subunit gpA, endonuclease domain	GpA_nuclease
UHGV-0194245_31	COG	COG5525	Phage terminase, large subunit GpA	NA
UHGV-0194245_31	HAMAP	MF_04144	Terminase, large subunit	NA
UHGV-0194245_31	Structural annotation	PF05876, PF20454, MF_04144, TIGR01547, COG5525	NA	NA
UHGV-0194245_32	UniRef90	UniRef90_UPI00157158CF	peptidylprolyl isomerase	NA
UHGV-0194245_32	eggNOG-mapper	935948.KE386495_gene1190	NA	NA
UHGV-0194245_32	Structural annotation	PF19645, COG1382	NA	NA
UHGV-0194245_33	PHROG	phrog_21	portal protein	head and packaging
UHGV-0194245_33	UniRef90	UniRef90_A0A3P6JRU5	Phage portal protein, lambda family	NA
UHGV-0194245_33	eggNOG-mapper	935948.KE386495_gene1189	Phage portal protein, lambda family	NA
UHGV-0194245_33	Pfam	PF05136	Phage portal protein, lambda family	Phage_portal_2
UHGV-0194245_33	NCBIFam	TIGR01539.1	phage portal protein	NA
UHGV-0194245_33	COG	COG5511	Phage capsid protein	NA
UHGV-0194245_33	Structural annotation	PF05136, MF_04135, TIGR01539, COG5511	NA	NA
UHGV-0194245_34	KOfam	K06904	NA	NA
UHGV-0194245_34	PHROG	phrog_4523	major head and protease protein	head and packaging
UHGV-0194245_34	UniRef90	UniRef90_A0A3P6KQL2	Mu-like prophage major head subunit gpT	NA
UHGV-0194245_34	eggNOG-mapper	935948.KE386495_gene1188	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides	NA
UHGV-0194245_34	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0194245_34	Pfam	PF10124	Mu-like prophage major head subunit gpT	Mu-like_gpT
UHGV-0194245_34	COG	COG3087	Cell division protein FtsN	NA
UHGV-0194245_34	Structural annotation	PF19821, PF04586, MF_04119, TIGR04387, TIGR01543, COG3740, COG4653	NA	NA
UHGV-0194245_35	PHROG	phrog_122	head decoration	head and packaging
UHGV-0194245_35	UniRef90	UniRef90_UPI0015706630	NA	NA
UHGV-0194245_35	eggNOG-mapper	472759.Nhal_0999	NA	NA
UHGV-0194245_35	Pfam	PF09956	NA	DUF2190
UHGV-0194245_35	COG	COG5471	Predicted phage recombinase, RecA/RadA family	NA
UHGV-0194245_36	PHROG	phrog_2551	minor tail protein	tail
UHGV-0194245_36	eggNOG-mapper	1415774.U728_503	NA	NA
UHGV-0194245_36	Structural annotation	PF13856	NA	NA
UHGV-0194245_37	PHROG	phrog_27	tail completion or Neck1 protein	connector
UHGV-0194245_37	UniRef90	UniRef90_UPI0005579931	phage tail protein	NA
UHGV-0194245_37	eggNOG-mapper	1211817.CCAT010000013_gene3180	Prophage minor tail protein Z (GPZ)	NA
UHGV-0194245_37	Pfam	PF06763	Prophage minor tail protein Z (GPZ)	Minor_tail_Z
UHGV-0194245_37	Structural annotation	PF06763	NA	NA
UHGV-0194245_38	PHROG	phrog_2581	virion structural protein	head and packaging
UHGV-0194245_38	eggNOG-mapper	1415774.U728_505	NA	NA
UHGV-0194245_38	Structural annotation	PF06141, COG5003	NA	NA
UHGV-0194245_39	KOfam	K06907	NA	NA
UHGV-0194245_39	PHROG	phrog_23	tail sheath	tail
UHGV-0194245_39	UniRef90	UniRef90_A0A3P6KBB6	Phage tail sheath protein FI	NA
UHGV-0194245_39	eggNOG-mapper	1211817.CCAT010000013_gene3178	COG3497 Phage tail sheath protein FI	NA
UHGV-0194245_39	COG	COG3497	Phage tail sheath protein FI	NA
UHGV-0194245_39	Structural annotation	PF10758, TIGR03355, COG3497	NA	NA
UHGV-0194245_40	KOfam	K06908	NA	NA
UHGV-0194245_40	PHROG	phrog_55	head closure	connector
UHGV-0194245_40	UniRef90	UniRef90_A0A3P6KP86	Putative phage major tail tube protein	NA
UHGV-0194245_40	eggNOG-mapper	1415774.U728_507	phage major tail tube protein	NA
UHGV-0194245_40	Pfam	PF04985	Phage tail tube protein FII	Phage_tube
UHGV-0194245_40	COG	COG3498	Phage tail tube protein FII	NA
UHGV-0194245_40	Structural annotation	PF04985, TIGR01611, COG3498	NA	NA
UHGV-0194245_41	PHROG	phrog_3140	tail assembly chaperone	tail
UHGV-0194245_41	UniRef90	UniRef90_A0A846K252	Phage tail assembly protein	NA
UHGV-0194245_41	eggNOG-mapper	1415774.U728_508	NA	NA
UHGV-0194245_41	Structural annotation	PF10109	NA	NA
UHGV-0194245_42	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0194245_42	UniRef90	UniRef90_A0A3P6K829	Phage tail tape measure protein, TP901 family	NA
UHGV-0194245_42	eggNOG-mapper	1151292.QEW_4525	nuclear chromosome segregation	NA
UHGV-0194245_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0194245_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0194245_42	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0194245_42	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0194245_43	PHROG	phrog_46	tail protein	tail
UHGV-0194245_43	UniRef90	UniRef90_A0A3P6JMP9	Phage tail protein gpX	NA
UHGV-0194245_43	eggNOG-mapper	1291050.JAGE01000001_gene446	Phage Tail Protein X	NA
UHGV-0194245_43	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0194245_43	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0194245_44	KOfam	K06905	NA	NA
UHGV-0194245_44	PHROG	phrog_52	tail protein	tail
UHGV-0194245_44	UniRef90	UniRef90_A0A3P6KSU8	Phage protein D	NA
UHGV-0194245_44	eggNOG-mapper	1415774.U728_511	COG3500 Phage protein D	NA
UHGV-0194245_44	COG	COG3500	NA	NA
UHGV-0194245_44	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0194245_45	UniRef90	UniRef90_A0A3P6JU61	Putative phage baseplate assembly protein V	NA
UHGV-0194245_46	PHROG	phrog_15956	tail assembly protein	tail
UHGV-0194245_46	UniRef90	UniRef90_UPI001570DC07	phage tail protein	NA
UHGV-0194245_46	eggNOG-mapper	1211817.CCAT010000013_gene3170	Phage P2 GpU	NA
UHGV-0194245_46	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0194245_46	COG	COG3499	NA	NA
UHGV-0194245_46	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0194245_47	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0194245_47	UniRef90	UniRef90_A0A3P6KPY8	Putative GPW/gp25 family protein	NA
UHGV-0194245_47	eggNOG-mapper	1211817.CCAT010000013_gene3169	NA	NA
UHGV-0194245_47	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0194245_47	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0194245_48	PHROG	phrog_6	baseplate protein	tail
UHGV-0194245_48	UniRef90	UniRef90_A0A3P6KBC8	Baseplate J family protein	NA
UHGV-0194245_48	eggNOG-mapper	1211817.CCAT010000013_gene3168	Baseplate J-like protein	NA
UHGV-0194245_48	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0194245_48	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0194245_48	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0194245_49	PHROG	phrog_14404	baseplate protein	tail
UHGV-0194245_49	UniRef90	UniRef90_A0A3P6KBA7	Phage tail protein	NA
UHGV-0194245_49	eggNOG-mapper	1415774.U728_516	Phage tail protein (Tail_P2_I)	NA
UHGV-0194245_49	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0194245_49	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0194245_49	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0194245_49	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0194245_50	PHROG	phrog_1780	tail collar fiber protein	tail
UHGV-0194245_50	UniRef90	UniRef90_UPI0012E6080F	phage tail protein	NA
UHGV-0194245_50	eggNOG-mapper	931276.Cspa_c27090	Phage tail-collar fibre protein	NA
UHGV-0194245_50	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0194245_50	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-0194245_50	Structural annotation	PF12571, COG5301	NA	NA
UHGV-0194245_52	eggNOG-mapper	1415774.U728_1648	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0194245	Yes	34,725 bps	29.57%	73.64%	0.9696
UHGV-0142659	No	35,223 bps	29.15%	74.73%	0.9506
UHGV-1941348	No	31,302 bps	29.54%	66.38%	0.9626
UHGV-0137791	No	23,639 bps	30.18%	49.80%	0.9707