vOTU-020431

Overview

vOTU representative UHGV-0201535

No. of genomes 7

Genome length 43,927 bps

Completeness 70.31% (medium-quality)

Host Lachnospiraceae

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-020431
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00010 › vSUBFAM-00106 › vOTU-020431
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae
Host range breadth	Family
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0201535
BioSample	SAMN00792016
Genome length	43,927 bps
CheckV completeness	70.31% (medium-quality)
CheckV contamination	0.00%
CDS count	62
CDS density	91.25%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0201535_2	PHROG	phrog_13590	kinase	other
UHGV-0201535_2	eggNOG-mapper	207559.Dde_3428	NA	NA
UHGV-0201535_3	KOfam	K03152	thiJ; protein deglycase [EC:3.5.1.124]	NA
UHGV-0201535_3	PHROG	phrog_18258	NA	unknown function
UHGV-0201535_3	UniRef90	UniRef90_A0A1Q6SVR2	Glutamine amidotransferase	NA
UHGV-0201535_3	eggNOG-mapper	585394.RHOM_11325	DJ-1/PfpI family	NA
UHGV-0201535_3	Pfam	PF01965	DJ-1/PfpI family	DJ-1_PfpI
UHGV-0201535_3	COG	COG0693	Protein/nucleotide deglycase, PfpI/YajL/DJ-1 family (repair of methylglyoxal-glycated proteins and nucleic acids)	NA
UHGV-0201535_4	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0201535_4	PHROG	phrog_435	endolysin	lysis
UHGV-0201535_4	UniRef90	UniRef90_A0A173UCF2	N-acetylmuramoyl-L-alanine amidase LytC	NA
UHGV-0201535_4	eggNOG-mapper	411490.ANACAC_00597	Cell wall hydrolase autolysin	NA
UHGV-0201535_4	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0201535_4	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0201535_4	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0201535_5	PHROG	phrog_443	holin	lysis
UHGV-0201535_5	UniRef90	UniRef90_UPI001C0212A6	holin	NA
UHGV-0201535_5	eggNOG-mapper	1235802.C823_05612	Putative lactococcus lactis phage r1t holin	NA
UHGV-0201535_5	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0201535_5	Structural annotation	PF16945	NA	NA
UHGV-0201535_6	PHROG	phrog_937	hemolysin	other
UHGV-0201535_7	PHROG	phrog_17196	kinase	other
UHGV-0201535_7	UniRef90	UniRef90_A0A564VXL8	Bacterial Ig-like domain (Group 2)	NA
UHGV-0201535_7	eggNOG-mapper	397290.C810_05240	NA	NA
UHGV-0201535_8	PHROG	phrog_2566	NA	unknown function
UHGV-0201535_8	UniRef90	UniRef90_Q9AZX0	Orf59	NA
UHGV-0201535_8	eggNOG-mapper	272623.L69746	NA	NA
UHGV-0201535_9	PHROG	phrog_18190	NA	unknown function
UHGV-0201535_9	UniRef90	UniRef90_A0A173UFM3	Peptidase S74 domain-containing protein	NA
UHGV-0201535_9	eggNOG-mapper	1235790.C805_00089	NA	NA
UHGV-0201535_9	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0201535_9	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0201535_10	PHROG	phrog_1194	NA	unknown function
UHGV-0201535_10	eggNOG-mapper	742733.HMPREF9469_01808	NA	NA
UHGV-0201535_10	Pfam	PF20458	NA	DUF6711
UHGV-0201535_10	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0201535_11	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0201535_11	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0201535_11	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0201535_12	PHROG	phrog_706	NA	unknown function
UHGV-0201535_12	UniRef90	UniRef90_C7GBZ7	Bacteriophage Gp15 protein	NA
UHGV-0201535_12	eggNOG-mapper	1235790.C805_00084	Bacteriophage Gp15 protein	NA
UHGV-0201535_12	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0201535_12	Structural annotation	PF06854	NA	NA
UHGV-0201535_13	UniRef90	UniRef90_A0A3B9CD56	RNA polymerase subunit sigma	NA
UHGV-0201535_13	Structural annotation	PF10666	NA	NA
UHGV-0201535_14	PHROG	phrog_3099	NA	unknown function
UHGV-0201535_14	eggNOG-mapper	1235790.C805_00082	NA	NA
UHGV-0201535_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0201535_15	PHROG	phrog_3266	tail completion	connector
UHGV-0201535_15	eggNOG-mapper	1235790.C805_00081	NA	NA
UHGV-0201535_15	Structural annotation	PF12691	NA	NA
UHGV-0201535_16	PHROG	phrog_3366	NA	unknown function
UHGV-0201535_16	eggNOG-mapper	476272.RUMHYD_01779	NA	NA
UHGV-0201535_16	Structural annotation	PF20536, COG5614	NA	NA
UHGV-0201535_17	PHROG	phrog_1048	NA	unknown function
UHGV-0201535_17	UniRef90	UniRef90_UPI00189A7662	NA	NA
UHGV-0201535_17	eggNOG-mapper	588581.Cpap_1521	NA	NA
UHGV-0201535_17	Pfam	PF11195	NA	DUF2829
UHGV-0201535_17	dbAPIS	APIS029	Tad2 is a "sponge" that sequesters the immune signaling molecules produced by Thoeris TIR-domain proteins in response to phage.	NA
UHGV-0201535_17	Structural annotation	PF11195	NA	NA
UHGV-0201535_18	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0201535_18	eggNOG-mapper	476272.RUMHYD_01778	NA	NA
UHGV-0201535_19	PHROG	phrog_247	major head protein	head and packaging
UHGV-0201535_19	UniRef90	UniRef90_A0A3R6GNQ1	Phage coat protein	NA
UHGV-0201535_19	eggNOG-mapper	536233.CLO_0886	NA	NA
UHGV-0201535_19	Pfam	PF20036	Major capsid protein 13-like	Gp13-like
UHGV-0201535_19	COG	COG1106	ATPase/GTPase, AAA15 family	NA
UHGV-0201535_19	Structural annotation	PF20036, MF_04113, TIGR04387, COG4653	NA	NA
UHGV-0201535_20	eggNOG-mapper	1539298.JO41_08210	Phage minor structural protein GP20	NA
UHGV-0201535_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0201535_22	UniRef90	UniRef90_A0A6L5YIK0	Phage capsid protein	NA
UHGV-0201535_22	eggNOG-mapper	936375.HMPREF1152_1071	NA	NA
UHGV-0201535_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0201535_22	COG	COG2369	NA	NA
UHGV-0201535_22	Structural annotation	PF06152	NA	NA
UHGV-0201535_23	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0201535_23	UniRef90	UniRef90_UPI000E4A8F9F	minor capsid protein	NA
UHGV-0201535_23	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-0201535_23	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0201535_23	Structural annotation	PF11114	NA	NA
UHGV-0201535_24	PHROG	phrog_533	portal protein	head and packaging
UHGV-0201535_24	UniRef90	UniRef90_A0A3B9CD47	Phage capsid protein	NA
UHGV-0201535_24	eggNOG-mapper	476272.RUMHYD_01758	phage minor capsid protein	NA
UHGV-0201535_24	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0201535_25	PHROG	phrog_1233	NA	unknown function
UHGV-0201535_25	eggNOG-mapper	33035.JPJF01000106_gene3130	NA	NA
UHGV-0201535_25	Structural annotation	PF13058	NA	NA
UHGV-0201535_26	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0201535_26	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0201535_26	UniRef90	UniRef90_A0A3R6H2I4	Terminase_3 domain-containing protein	NA
UHGV-0201535_26	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-0201535_26	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0201535_26	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0201535_26	COG	COG1783	Phage terminase large subunit	NA
UHGV-0201535_26	Structural annotation	PF04466, PF17288, PF06056, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0201535_28	PHROG	phrog_33130	NA	unknown function
UHGV-0201535_28	UniRef90	UniRef90_A0A3B9CD52	S1-like domain-containing protein	NA
UHGV-0201535_28	Structural annotation	PF10922	NA	NA
UHGV-0201535_29	eggNOG-mapper	411463.EUBVEN_01842	NA	NA
UHGV-0201535_31	PHROG	phrog_25176	NA	unknown function
UHGV-0201535_31	eggNOG-mapper	397290.C810_01476	NA	NA
UHGV-0201535_32	eggNOG-mapper	1131462.DCF50_p1314	NA	NA
UHGV-0201535_33	KOfam	K00571	E2.1.1.72; site-specific DNA-methyltransferase (adenine-specific) [EC:2.1.1.72]	NA
UHGV-0201535_33	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0201535_33	UniRef90	UniRef90_A0A173S745	Putative methyltransferase	NA
UHGV-0201535_33	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-0201535_33	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0201535_33	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0201535_33	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0201535_33	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0201535_35	PHROG	phrog_8684	NA	unknown function
UHGV-0201535_35	UniRef90	UniRef90_A0A5B3GH48	YopX domain-containing protein	NA
UHGV-0201535_35	eggNOG-mapper	411470.RUMGNA_02199	NA	NA
UHGV-0201535_35	Pfam	PF09643	YopX protein	YopX
UHGV-0201535_35	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-0201535_35	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0201535_36	PHROG	phrog_7711	NA	unknown function
UHGV-0201535_36	UniRef90	UniRef90_UPI001C38CAD2	Lar family restriction alleviation protein	NA
UHGV-0201535_36	eggNOG-mapper	268407.PWYN_15580	NA	NA
UHGV-0201535_37	eggNOG-mapper	397290.C810_01492	NA	NA
UHGV-0201535_37	Structural annotation	PF18597	NA	NA
UHGV-0201535_43	PHROG	phrog_16304	NA	unknown function
UHGV-0201535_43	UniRef90	UniRef90_A0A173S8B3	NA	NA
UHGV-0201535_43	eggNOG-mapper	411490.ANACAC_00800	NA	NA
UHGV-0201535_43	Pfam	PF19808	NA	DUF6291
UHGV-0201535_43	Structural annotation	PF19808	NA	NA
UHGV-0201535_44	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0201535_44	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0201535_44	UniRef90	UniRef90_A0A1C5MBR6	Endodeoxyribonuclease RusA	NA
UHGV-0201535_44	eggNOG-mapper	1235790.C805_00029	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-0201535_44	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0201535_44	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0201535_44	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-0201535_46	PHROG	phrog_7566	NA	unknown function
UHGV-0201535_46	UniRef90	UniRef90_UPI001C0181E7	phosphoenolpyruvate carboxykinase	NA
UHGV-0201535_46	eggNOG-mapper	1007096.BAGW01000031_gene114	NA	NA
UHGV-0201535_47	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0201535_47	eggNOG-mapper	1304866.K413DRAFT_1197	NA	NA
UHGV-0201535_48	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0201535_48	UniRef90	UniRef90_A0A173S979	ERF superfamily	NA
UHGV-0201535_48	eggNOG-mapper	1304866.K413DRAFT_1196	ERF superfamily	NA
UHGV-0201535_48	Pfam	PF04404	ERF superfamily	ERF
UHGV-0201535_48	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0201535_48	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0201535_49	PHROG	phrog_674	NA	unknown function
UHGV-0201535_49	UniRef90	UniRef90_A0A3R6B153	NA	NA
UHGV-0201535_49	eggNOG-mapper	411460.RUMTOR_02065	NA	NA
UHGV-0201535_49	Pfam	PF07083	NA	DUF1351
UHGV-0201535_49	Structural annotation	PF07083	NA	NA
UHGV-0201535_52	Structural annotation	PF12750	NA	NA
UHGV-0201535_53	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0201535_53	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-0201535_56	Structural annotation	PF11614, TIGR02588, COG2847	NA	NA
UHGV-0201535_57	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0201535_57	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0201535_57	UniRef90	UniRef90_A0A417QIC0	XRE family transcriptional regulator	NA
UHGV-0201535_57	eggNOG-mapper	1111454.HMPREF1250_1028	carbohydrate binding	NA
UHGV-0201535_57	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0201535_57	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0201535_57	COG	COG2390	DNA-binding transcriptional regulator LsrR, DeoR family	NA
UHGV-0201535_57	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0201535_58	UniRef90	UniRef90_UPI00164BB8FD	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0201535_58	Structural annotation	PF06114	NA	NA
UHGV-0201535_59	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0201535_59	PHROG	phrog_19856	NA	unknown function
UHGV-0201535_59	UniRef90	UniRef90_A0A143XQ54	DNA translocase FtsK	NA
UHGV-0201535_59	eggNOG-mapper	1235790.C805_00010	Restriction endonuclease	NA
UHGV-0201535_59	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0201535_59	Pfam	PF09397	Ftsk gamma domain	FtsK_gamma
UHGV-0201535_59	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0201535_59	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0201535_59	Structural annotation	PF04471, PF09397, NF003162, COG1787	NA	NA
UHGV-0201535_60	eggNOG-mapper	1197477.IA57_04185	NA	NA
UHGV-0201535_60	Structural annotation	PF20505, MF_00194, NF001462, COG2974	NA	NA
UHGV-0201535_62	KOfam	K14059	int; integrase	NA
UHGV-0201535_62	PHROG	phrog_1	integrase	integration and excision
UHGV-0201535_62	UniRef90	UniRef90_UPI0004952FB5	site-specific integrase	NA
UHGV-0201535_62	eggNOG-mapper	1235793.C809_01886	Phage integrase family	NA
UHGV-0201535_62	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-0201535_62	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0201535_62	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0201535_62	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0201535	Yes	43,927 bps	42.42%	70.31%	0.9785
UHGV-0119849	No	30,775 bps	43.55%	71.96%	0.9819
UHGV-1474309	No	30,775 bps	43.55%	71.96%	0.9819
UHGV-0123787	No	44,248 bps	42.39%	70.82%	0.9803
UHGV-0098667	No	25,583 bps	42.88%	59.93%	0.9806
UHGV-1524075	No	24,975 bps	43.04%	58.51%	0.9816
UHGV-0258593	No	23,128 bps	43.47%	54.19%	0.9810