vOTU-020502

Overview

No. of genomes 5

Genome length 27,019 bps

Completeness 56.93% (medium-quality)

Host Clostridioides difficile

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-020502
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-04722 › vGENUS-08707 › vOTU-020502
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Peptostreptococcales › Peptostreptococcaceae › Clostridioides › Clostridioides difficile
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1510189
BioSample	SAMEA2338673
Genome length	27,019 bps
CheckV completeness	56.93% (medium-quality)
CheckV contamination	0.00%
CDS count	33
CDS density	91.58%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1510189_3	KOfam	K08651	E3.4.21.66; thermitase [EC:3.4.21.66]	NA
UHGV-1510189_3	PHROG	phrog_3677	protease	other
UHGV-1510189_3	UniRef90	UniRef90_R5FSU2	BIG2 domain-containing protein	NA
UHGV-1510189_3	eggNOG-mapper	323259.Mhun_0648	Subtilase family	NA
UHGV-1510189_3	PADLOC	subtilase	NA	NA
UHGV-1510189_3	Pfam	PF00082	Subtilase family	Peptidase_S8
UHGV-1510189_3	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-1510189_3	COG	COG0614	ABC-type Fe3+-hydroxamate transport system, periplasmic component	NA
UHGV-1510189_4	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1510189_4	PHROG	phrog_498	DNA methyltransferase	other
UHGV-1510189_4	UniRef90	UniRef90_A0A7X8ZXD2	Methyltransferase	NA
UHGV-1510189_4	eggNOG-mapper	646529.Desaci_1291	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1510189_4	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-1510189_4	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-1510189_4	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1510189_4	COG	COG0863	DNA modification methylase	NA
UHGV-1510189_4	Structural annotation	PF01555, PF02195, MF_02015, MF_01872, NF010253, TIGR04285, COG0863, COG1475	NA	NA
UHGV-1510189_6	PHROG	phrog_12	portal protein	head and packaging
UHGV-1510189_6	UniRef90	UniRef90_UPI000B97DE72	phage portal protein	NA
UHGV-1510189_6	eggNOG-mapper	573061.Clocel_0780	Phage portal protein, HK97 family	NA
UHGV-1510189_6	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1510189_6	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1510189_6	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1510189_6	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-1510189_7	KOfam	K06904	NA	NA
UHGV-1510189_7	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1510189_7	UniRef90	UniRef90_UPI00084DFBF4	HK97 family phage prohead protease	NA
UHGV-1510189_7	eggNOG-mapper	573061.Clocel_0781	Phage prohead protease, HK97 family	NA
UHGV-1510189_7	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1510189_7	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1510189_7	COG	COG3740	Phage head maturation protease	NA
UHGV-1510189_7	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1510189_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-1510189_8	UniRef90	UniRef90_D9SSF5	Phage major capsid protein, HK97 family	NA
UHGV-1510189_8	eggNOG-mapper	573061.Clocel_0782	Phage capsid family	NA
UHGV-1510189_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1510189_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1510189_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1510189_8	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1510189_10	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1510189_10	UniRef90	UniRef90_A0A7G9W3S1	Phage gp6-like head-tail connector protein	NA
UHGV-1510189_10	eggNOG-mapper	1408424.JHYI01000032_gene3820	Phage gp6-like head-tail connector protein	NA
UHGV-1510189_10	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1510189_10	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1510189_10	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1510189_11	PHROG	phrog_25	head closure Hc1	connector
UHGV-1510189_11	UniRef90	UniRef90_A0A0L6JT55	Phage head-tail adaptor	NA
UHGV-1510189_11	eggNOG-mapper	398512.JQKC01000005_gene5453	Phage head-tail joining protein	NA
UHGV-1510189_11	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1510189_11	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-1510189_11	COG	COG5614	Phage head-tail adaptor	NA
UHGV-1510189_11	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1510189_12	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1510189_12	UniRef90	UniRef90_UPI0010EDA23B	HK97 gp10 family phage protein	NA
UHGV-1510189_12	eggNOG-mapper	935948.KE386495_gene1330	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1510189_12	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1510189_12	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1510189_12	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-1510189_13	PHROG	phrog_347	tail terminator	connector
UHGV-1510189_13	UniRef90	UniRef90_UPI0010E37C80	NA	NA
UHGV-1510189_13	eggNOG-mapper	398512.JQKC01000005_gene5455	NA	NA
UHGV-1510189_13	Pfam	PF11367	NA	DUF3168
UHGV-1510189_13	Structural annotation	PF11367	NA	NA
UHGV-1510189_14	PHROG	phrog_1407	major tail protein	tail
UHGV-1510189_14	UniRef90	UniRef90_A0A0L6JT83	Major tail protein	NA
UHGV-1510189_14	eggNOG-mapper	398512.JQKC01000005_gene5456	NA	NA
UHGV-1510189_14	Pfam	PF06199	Phage tail tube protein	Phage_tail_2
UHGV-1510189_14	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1510189_15	PHROG	phrog_2115	tail protein	tail
UHGV-1510189_15	UniRef90	UniRef90_A0A533S6D3	Gene transfer agent family protein	NA
UHGV-1510189_15	eggNOG-mapper	398512.JQKC01000005_gene5459	NA	NA
UHGV-1510189_15	Structural annotation	PF19591	NA	NA
UHGV-1510189_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1510189_16	UniRef90	UniRef90_A0A1G5EF29	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-1510189_16	eggNOG-mapper	387631.Asulf_01539	Phage tail tape measure protein TP901	NA
UHGV-1510189_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1510189_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1510189_16	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1510189_16	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1510189_17	PHROG	phrog_1194	NA	unknown function
UHGV-1510189_17	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1510189_18	PHROG	phrog_13879	NA	unknown function
UHGV-1510189_18	eggNOG-mapper	645991.Sgly_0356	NA	NA
UHGV-1510189_18	Structural annotation	PF14594, PF00754, NF033848, COG3500, COG5156	NA	NA
UHGV-1510189_20	COG	COG4675	Phage tail collar domain	NA
UHGV-1510189_21	PHROG	phrog_9428	NA	unknown function
UHGV-1510189_23	Structural annotation	PF01835, NF005176, COG5456	NA	NA
UHGV-1510189_25	PHROG	phrog_38190	NA	unknown function
UHGV-1510189_25	eggNOG-mapper	411473.RUMCAL_00421	tail collar domain protein	NA
UHGV-1510189_25	Pfam	PF09743	E3 UFM1-protein ligase 1	E3_UFM1_ligase
UHGV-1510189_25	COG	COG4675	Phage tail collar domain	NA
UHGV-1510189_26	eggNOG-mapper	290402.Cbei_0924	alcohol dehydrogenase	NA
UHGV-1510189_26	COG	COG1063	Threonine dehydrogenase or related Zn-dependent dehydrogenase	NA
UHGV-1510189_28	PHROG	phrog_1129	holin	lysis
UHGV-1510189_28	UniRef90	UniRef90_A0A1G6ETY7	Phage holin family Hol44, holin superfamily V	NA
UHGV-1510189_28	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1510189_28	Structural annotation	PF06946	NA	NA
UHGV-1510189_30	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1510189_30	PHROG	phrog_95	integrase	integration and excision
UHGV-1510189_30	UniRef90	UniRef90_UPI000984C2A9	recombinase family protein	NA
UHGV-1510189_30	eggNOG-mapper	748727.CLJU_c03770	resolvase	NA
UHGV-1510189_30	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1510189_30	Pfam	PF07508	Recombinase	Recombinase
UHGV-1510189_30	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1510189_30	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1510189_30	Structural annotation	PF07508, PF00239, PF10944, NF041201, COG1961	NA	NA
UHGV-1510189_31	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1510189_31	PHROG	phrog_95	integrase	integration and excision
UHGV-1510189_31	UniRef90	UniRef90_UPI001F3846CE	recombinase family protein	NA
UHGV-1510189_31	eggNOG-mapper	748727.CLJU_c03770	resolvase	NA
UHGV-1510189_31	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1510189_31	Pfam	PF07508	Recombinase	Recombinase
UHGV-1510189_31	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1510189_31	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1510189_31	Structural annotation	PF00239, PF07508, PF18822, NF041201, COG1961	NA	NA
UHGV-1510189_32	eggNOG-mapper	509191.AEDB02000099_gene3926	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1510189	Yes	27,019 bps	28.90%	56.93%	0.9538
UHGV-1869404	No	26,242 bps	29.14%	55.48%	0.9691
UHGV-1566438	No	23,415 bps	29.29%	48.16%	0.9677
UHGV-1561585	No	23,329 bps	29.29%	47.98%	0.9634
UHGV-0286515	No	10,934 bps	29.70%	24.80%	0.9769