vOTU-020611

Overview

No. of genomes 4

Genome length 29,821 bps

Completeness 73.73% (medium-quality)

Host Bifidobacterium

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-020611
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00024 › vSUBFAM-00169 › vGENUS-08598 › vOTU-020611
Host taxonomy	Bacteria › Actinobacteriota › Actinomycetia › Actinomycetales › Bifidobacteriaceae › Bifidobacterium
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0087694
BioSample	NA
Genome length	29,821 bps
CheckV completeness	73.73% (medium-quality)
CheckV contamination	0.00%
CDS count	45
CDS density	89.55%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0087694_1	KOfam	K03686	dnaJ; molecular chaperone DnaJ	NA
UHGV-0087694_1	PHROG	phrog_14336	NA	unknown function
UHGV-0087694_1	UniRef90	UniRef90_Q8G6C6	Chaperone protein DnaJ	NA
UHGV-0087694_1	eggNOG-mapper	216816.GS08_05510	ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK and GrpE are required for fully efficient folding. Also involved, together with DnaK and GrpE, in the DNA replication of plasmids through activation of initiation proteins	NA
UHGV-0087694_1	Pfam	PF00226	DnaJ domain	DnaJ
UHGV-0087694_1	Pfam	PF01556	DnaJ C terminal domain	DnaJ_C
UHGV-0087694_1	NCBIFam	NF008035.0	molecular chaperone DnaJ	NA
UHGV-0087694_1	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0087694_1	HAMAP	MF_01152	Chaperone protein DnaJ [dnaJ]	NA
UHGV-0087694_1	Structural annotation	PF01556, PF00226, MF_01152, NF010882, COG0484	NA	NA
UHGV-0087694_2	PHROG	phrog_881	holin	lysis
UHGV-0087694_2	UniRef90	UniRef90_UPI00103D6E52	holin	NA
UHGV-0087694_2	eggNOG-mapper	158787.BSCA_1069	Putative phage holin Dp-1	NA
UHGV-0087694_2	Pfam	PF16938	Putative phage holin Dp-1	Phage_holin_Dp1
UHGV-0087694_2	Structural annotation	PF16938	NA	NA
UHGV-0087694_3	KOfam	K07273	acm; lysozyme	NA
UHGV-0087694_3	PHROG	phrog_291	endolysin	lysis
UHGV-0087694_3	UniRef90	UniRef90_A0A1D7UNT6	Phage lysin-like lysozyme M1	NA
UHGV-0087694_3	eggNOG-mapper	78345.BMERY_0862	Glycosyl hydrolases family 25	NA
UHGV-0087694_3	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0087694_3	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0087694_3	Structural annotation	PF01183, NF007404, COG3757, COG1388	NA	NA
UHGV-0087694_5	UniRef90	UniRef90_A0A1L5L3I3	PilM	NA
UHGV-0087694_6	UniRef90	UniRef90_A0A1L5L3T6	MurA: UDP-N-acetylglucosamine (Fragment)	NA
UHGV-0087694_6	Structural annotation	PF01105, NF033147	NA	NA
UHGV-0087694_8	PHROG	phrog_28754	NA	unknown function
UHGV-0087694_8	UniRef90	UniRef90_A0A174BVV4	Tail type measure protein	NA
UHGV-0087694_8	eggNOG-mapper	1437610.BREU_1370	outer membrane autotransporter barrel domain protein	NA
UHGV-0087694_8	COG	COG3468	Autotransporter adhesin AidA	NA
UHGV-0087694_9	KOfam	K14059	int; integrase	NA
UHGV-0087694_9	PHROG	phrog_1	integrase	integration and excision
UHGV-0087694_9	UniRef90	UniRef90_A0A1X3A1N7	Recombinase	NA
UHGV-0087694_9	eggNOG-mapper	1680.BADO_1224	DNA integration	NA
UHGV-0087694_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0087694_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0087694_9	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-0087694_12	PHROG	phrog_9994	NA	unknown function
UHGV-0087694_12	eggNOG-mapper	1680.BADO_1228	NA	NA
UHGV-0087694_12	Structural annotation	PF20747, PF08931	NA	NA
UHGV-0087694_14	PHROG	phrog_538	minor tail protein	tail
UHGV-0087694_14	UniRef90	UniRef90_A0A087BHI6	Phage head fiber protein	NA
UHGV-0087694_14	eggNOG-mapper	1680.BADO_1230	NA	NA
UHGV-0087694_14	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0087694_15	eggNOG-mapper	1680.BADO_1231	NA	NA
UHGV-0087694_15	Structural annotation	PF16774, TIGR01633, COG4722	NA	NA
UHGV-0087694_16	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0087694_16	UniRef90	UniRef90_A0A4R0U113	TP901 family phage tail tape measure protein	NA
UHGV-0087694_16	eggNOG-mapper	1680.BADO_1232	Phage-related minor tail protein	NA
UHGV-0087694_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0087694_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0087694_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0087694_16	Structural annotation	PF10145, TIGR01760	NA	NA
UHGV-0087694_17	UniRef90	UniRef90_A0A1X2YXV5	Terminase	NA
UHGV-0087694_18	UniRef90	UniRef90_A0A076JN63	DNAase primase	NA
UHGV-0087694_18	eggNOG-mapper	1680.BADO_1234	NA	NA
UHGV-0087694_18	Structural annotation	PF08890	NA	NA
UHGV-0087694_19	PHROG	phrog_2491	major tail protein	tail
UHGV-0087694_19	UniRef90	UniRef90_A0A076JPN9	Gp28	NA
UHGV-0087694_19	eggNOG-mapper	1680.BADO_1235	NA	NA
UHGV-0087694_19	Structural annotation	PF16463, TIGR02241, COG3498	NA	NA
UHGV-0087694_20	UniRef90	UniRef90_A0A076JJ59	Transcriptional regulator	NA
UHGV-0087694_20	eggNOG-mapper	1680.BADO_1236	NA	NA
UHGV-0087694_20	Structural annotation	PF06141	NA	NA
UHGV-0087694_21	PHROG	phrog_19109	NA	unknown function
UHGV-0087694_21	eggNOG-mapper	1680.BADO_1237	NA	NA
UHGV-0087694_21	Structural annotation	TIGR01725	NA	NA
UHGV-0087694_22	PHROG	phrog_13779	NA	unknown function
UHGV-0087694_22	UniRef90	UniRef90_UPI000C30D9BC	NA	NA
UHGV-0087694_22	eggNOG-mapper	1680.BADO_1238	NA	NA
UHGV-0087694_22	Pfam	PF19586	NA	DUF6093
UHGV-0087694_22	Structural annotation	PF19586, TIGR01563, COG5614	NA	NA
UHGV-0087694_23	PHROG	phrog_137	head-tail adaptor Ad1	connector
UHGV-0087694_23	UniRef90	UniRef90_A0A087BHJ5	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0087694_23	eggNOG-mapper	593907.Celgi_1301	Phage protein Gp19/Gp15/Gp42	NA
UHGV-0087694_23	Structural annotation	PF09355	NA	NA
UHGV-0087694_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0087694_25	UniRef90	UniRef90_UPI000C30DF47	phage major capsid protein	NA
UHGV-0087694_25	eggNOG-mapper	748224.HMPREF9436_00690	Phage capsid family	NA
UHGV-0087694_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0087694_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0087694_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0087694_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0087694_27	PHROG	phrog_1522	head maturation protease	head and packaging
UHGV-0087694_27	eggNOG-mapper	1437603.BMON_0139	NA	NA
UHGV-0087694_28	PHROG	phrog_104	portal protein	head and packaging
UHGV-0087694_28	UniRef90	UniRef90_UPI000C3130D9	phage portal protein	NA
UHGV-0087694_28	eggNOG-mapper	1273125.Rrhod_0599	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0087694_28	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0087694_28	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0087694_29	PHROG	phrog_19179	terminase large subunit	head and packaging
UHGV-0087694_29	UniRef90	UniRef90_A0A087CAG9	Gp22	NA
UHGV-0087694_29	eggNOG-mapper	1437603.BMON_0141	Terminase	NA
UHGV-0087694_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0087694_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0087694_30	PHROG	phrog_226	minor tail protein	tail
UHGV-0087694_30	UniRef90	UniRef90_A0A3G3M4U7	Terminase small subunit	NA
UHGV-0087694_30	eggNOG-mapper	1437603.BMON_0142	NA	NA
UHGV-0087694_33	PHROG	phrog_597	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0087694_33	UniRef90	UniRef90_A0A087DI47	Gp28 phagic protein	NA
UHGV-0087694_33	eggNOG-mapper	158787.BSCA_1015	Transcriptional regulator	NA
UHGV-0087694_33	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-0087694_33	Structural annotation	PF05930, NF033499, COG3311	NA	NA
UHGV-0087694_34	PHROG	phrog_8013	NA	unknown function
UHGV-0087694_34	eggNOG-mapper	158787.BSCA_0747	tRNA 5'-leader removal	NA
UHGV-0087694_34	COG	COG2023	Ribonuclease P protein subunit RPR2	NA
UHGV-0087694_34	Structural annotation	COG0789	NA	NA
UHGV-0087694_35	PHROG	phrog_25066	NA	unknown function
UHGV-0087694_35	UniRef90	UniRef90_A0A1S2VX96	Tight junction protein ZO-3	NA
UHGV-0087694_35	eggNOG-mapper	1437610.BREU_1402	NA	NA
UHGV-0087694_36	PHROG	phrog_21331	NA	unknown function
UHGV-0087694_36	Structural annotation	PF17209, NF011231, COG1923	NA	NA
UHGV-0087694_37	PHROG	phrog_25156	NA	unknown function
UHGV-0087694_38	eggNOG-mapper	1437608.BBIA_1862	NA	NA
UHGV-0087694_39	PHROG	phrog_25775	NA	unknown function
UHGV-0087694_40	PHROG	phrog_23583	NA	unknown function
UHGV-0087694_42	KOfam	K13288	orn, REX2, REXO2; oligoribonuclease [EC:3.1.-.-]	NA
UHGV-0087694_42	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0087694_42	UniRef90	UniRef90_A0A0M4M1U2	Oligoribonuclease	NA
UHGV-0087694_42	eggNOG-mapper	1437609.BCAL_0154	3'-to-5' exoribonuclease specific for small oligoribonucleotides	NA
UHGV-0087694_42	COG	COG1949	Oligoribonuclease (3'-5' exoribonuclease)	NA
UHGV-0087694_42	Structural annotation	PF00929, MF_00045, NF003765, COG1949	NA	NA
UHGV-0087694_43	PHROG	phrog_27484	NA	unknown function
UHGV-0087694_44	PHROG	phrog_740	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0087694_44	UniRef90	UniRef90_A0A0M4MM11	Leucyl-tRNA synthetase	NA
UHGV-0087694_44	eggNOG-mapper	158787.BSCA_1022	HNH endonuclease	NA
UHGV-0087694_44	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0087694_45	PHROG	phrog_3926	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0087694_45	UniRef90	UniRef90_UPI0003110834	ADP-ribosylglycohydrolase family protein	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0087694	Yes	29,821 bps	60.27%	73.73%	0.9792
UHGV-1421745	No	21,862 bps	60.45%	54.15%	0.9810
UHGV-0334880	No	21,526 bps	59.80%	53.30%	0.9806
UHGV-1357183	No	16,624 bps	60.11%	41.22%	0.9824