vOTU-021718

Overview

vOTU representative UHGV-1928029

No. of genomes 5

Genome length 34,493 bps

Completeness 82.18% (medium-quality)

Host Frisingicoccus caecimuris

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-021718
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vOTU-021718
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Frisingicoccus › Frisingicoccus caecimuris
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1928029
BioSample	NA
Genome length	34,493 bps
CheckV completeness	82.18% (medium-quality)
CheckV contamination	0.00%
CDS count	43
CDS density	92.27%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1928029_1	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1928029_1	UniRef90	UniRef90_A0A414B846	HNH endonuclease	NA
UHGV-1928029_1	eggNOG-mapper	999413.HMPREF1094_02014	HNH nucleases	NA
UHGV-1928029_1	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1928029_1	Structural annotation	TIGR02646	NA	NA
UHGV-1928029_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1928029_2	UniRef90	UniRef90_A0A174WV03	FliA/WhiG subfamily RNA polymerase sigma-28 subunit	NA
UHGV-1928029_2	eggNOG-mapper	97138.C820_00772	sigma factor activity	NA
UHGV-1928029_2	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1928029_2	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1928029_3	PHROG	phrog_7024	NA	unknown function
UHGV-1928029_3	eggNOG-mapper	1286171.EAL2_c05240	NA	NA
UHGV-1928029_3	AcrCatalog	cluster_1398	NA	NA
UHGV-1928029_4	PHROG	phrog_2717	NA	unknown function
UHGV-1928029_4	eggNOG-mapper	476272.RUMHYD_02840	NA	NA
UHGV-1928029_4	Structural annotation	PF19962, COG1579	NA	NA
UHGV-1928029_6	UniRef90	UniRef90_UPI000E4C0B2A	NA	NA
UHGV-1928029_8	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1928029_8	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1928029_8	UniRef90	UniRef90_A0A4R2LL80	Helicase-like protein	NA
UHGV-1928029_8	eggNOG-mapper	1235799.C818_04202	SNF2 family N-terminal domain	NA
UHGV-1928029_8	PADLOC	DpdE_00010	DpdE	DPD
UHGV-1928029_8	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1928029_8	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1928029_8	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1928029_8	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1928029_9	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1928029_9	UniRef90	UniRef90_A0A2V2D4L8	VRR-NUC domain-containing protein	NA
UHGV-1928029_9	eggNOG-mapper	1235799.C818_04201	VRR_NUC	NA
UHGV-1928029_9	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-1928029_9	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-1928029_10	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1928029_10	UniRef90	UniRef90_A0A2V2D2X6	Virulence-associated protein E	NA
UHGV-1928029_10	eggNOG-mapper	1235799.C818_04200	Virulence-associated protein E	NA
UHGV-1928029_10	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1928029_10	COG	COG5545	Predicted P-loop ATPase and inactivated derivatives	NA
UHGV-1928029_10	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-1928029_11	KOfam	K02334	dpo; DNA polymerase bacteriophage-type [EC:2.7.7.7]	NA
UHGV-1928029_11	PHROG	phrog_17	DNA polymerase	DNA, RNA and nucleotide metabolism
UHGV-1928029_11	UniRef90	UniRef90_A0A2V2D359	POLAc domain-containing protein	NA
UHGV-1928029_11	eggNOG-mapper	1235799.C818_04199	DNA polymerase A domain	NA
UHGV-1928029_11	Pfam	PF00476	DNA polymerase family A	DNA_pol_A
UHGV-1928029_11	COG	COG0749	DNA polymerase I, 3'-5' exonuclease and polymerase domains	NA
UHGV-1928029_11	Structural annotation	PF00476, MF_04101, NF011540, COG0749	NA	NA
UHGV-1928029_12	PHROG	phrog_112	Gp2.5-like ssDNA binding protein and ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1928029_12	UniRef90	UniRef90_A0A2V2CXC8	NA	NA
UHGV-1928029_12	eggNOG-mapper	1235799.C818_04198	NA	NA
UHGV-1928029_12	Pfam	PF10991	Enterobacter phage Enc34, ssDNA-binding protein	Enc34_ssDNA-bd
UHGV-1928029_12	Structural annotation	PF10991, MF_04153, NF005241	NA	NA
UHGV-1928029_13	PHROG	phrog_69	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1928029_13	UniRef90	UniRef90_UPI00082E7F29	NA	NA
UHGV-1928029_13	eggNOG-mapper	1235799.C818_04197	NA	NA
UHGV-1928029_13	Pfam	PF10926	NA	DUF2800
UHGV-1928029_13	COG	COG2887	RecB family exonuclease	NA
UHGV-1928029_13	Structural annotation	PF10926, MF_03030, TIGR00372, COG2887	NA	NA
UHGV-1928029_14	PHROG	phrog_22695	NA	unknown function
UHGV-1928029_14	eggNOG-mapper	1235799.C818_04196	NA	NA
UHGV-1928029_16	PHROG	phrog_27197	NA	unknown function
UHGV-1928029_16	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-1928029_16	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1928029_18	UniRef90	UniRef90_UPI001C033D96	helix-turn-helix domain-containing protein	NA
UHGV-1928029_18	Structural annotation	PF13443, MF_00535, TIGR03070, COG3655	NA	NA
UHGV-1928029_21	UniRef90	UniRef90_A0A1Y4RCY6	NA	NA
UHGV-1928029_21	eggNOG-mapper	1121335.Clst_0370	NA	NA
UHGV-1928029_21	Structural annotation	PF05339, NF041951, COG3655	NA	NA
UHGV-1928029_22	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1928029_22	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1928029_22	UniRef90	UniRef90_A0A316PVY5	XRE family transcriptional regulator	NA
UHGV-1928029_22	eggNOG-mapper	1121423.JONT01000002_gene2372	Peptidase S24-like	NA
UHGV-1928029_22	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1928029_22	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1928029_22	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1928029_22	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG1974	NA	NA
UHGV-1928029_23	PHROG	phrog_34415	NA	unknown function
UHGV-1928029_23	UniRef90	UniRef90_UPI00195F6C5D	FxLYD domain-containing protein	NA
UHGV-1928029_23	eggNOG-mapper	1158607.UAU_02468	NA	NA
UHGV-1928029_23	NCBIFam	NF038353.1	FxLYD domain-containing protein	NA
UHGV-1928029_24	KOfam	K14059	int; integrase	NA
UHGV-1928029_24	PHROG	phrog_1	integrase	integration and excision
UHGV-1928029_24	UniRef90	UniRef90_A0A4R2LGG7	Integrase	NA
UHGV-1928029_24	eggNOG-mapper	1304866.K413DRAFT_3002	Belongs to the 'phage' integrase family	NA
UHGV-1928029_24	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1928029_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1928029_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1928029_24	Structural annotation	PF00589, PF12167, MF_02055, NF040815, COG4974	NA	NA
UHGV-1928029_25	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1928029_25	PHROG	phrog_435	endolysin	lysis
UHGV-1928029_25	UniRef90	UniRef90_A0A4R2LL56	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1928029_25	eggNOG-mapper	483218.BACPEC_01123	Sporulation related domain	NA
UHGV-1928029_25	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1928029_25	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1928029_25	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860, COG5492	NA	NA
UHGV-1928029_26	PHROG	phrog_199	holin	lysis
UHGV-1928029_26	UniRef90	UniRef90_A0A7M2RJZ1	Phage holin family protein	NA
UHGV-1928029_26	eggNOG-mapper	428126.CLOSPI_02191	Bacteriophage holin family	NA
UHGV-1928029_26	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1928029_26	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1928029_26	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1928029_27	PHROG	phrog_7121	tail fiber protein	tail
UHGV-1928029_27	UniRef90	UniRef90_A0A0M2NHB1	Neck appendage protein	NA
UHGV-1928029_27	eggNOG-mapper	428125.CLOLEP_00172	COG COG5295 Autotransporter adhesin	NA
UHGV-1928029_27	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1928029_28	PHROG	phrog_21765	NA	unknown function
UHGV-1928029_28	eggNOG-mapper	1235798.C817_04596	the current gene model (or a revised gene model) may contain a frame shift	NA
UHGV-1928029_28	COG	COG4675	Phage tail collar domain	NA
UHGV-1928029_29	PHROG	phrog_11037	NA	unknown function
UHGV-1928029_29	UniRef90	UniRef90_UPI0018A8CA3B	phage tail tip lysozyme	NA
UHGV-1928029_29	eggNOG-mapper	1235796.C815_01287	pathogenesis	NA
UHGV-1928029_29	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-1928029_29	Pfam	PF05257	CHAP domain	CHAP
UHGV-1928029_29	COG	COG3942	Surface antigen	NA
UHGV-1928029_29	Structural annotation	PF18013, PF00877, NF006360, COG3942	NA	NA
UHGV-1928029_30	PHROG	phrog_13289	tail protein	tail
UHGV-1928029_30	UniRef90	UniRef90_A0A844KBR1	Prophage_tail domain-containing protein	NA
UHGV-1928029_30	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-1928029_30	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1928029_30	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1928029_30	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-1928029_30	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1928029_31	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1928029_31	UniRef90	UniRef90_A0A3R6C171	Phage tail protein	NA
UHGV-1928029_31	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-1928029_31	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-1928029_31	COG	COG4722	Phage-related protein YomH	NA
UHGV-1928029_31	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1928029_32	PHROG	phrog_23464	NA	unknown function
UHGV-1928029_32	eggNOG-mapper	1232446.BAIE02000002_gene834	tape measure	NA
UHGV-1928029_32	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1928029_33	eggNOG-mapper	1235798.C817_04591	NA	NA
UHGV-1928029_33	Structural annotation	PF11836	NA	NA
UHGV-1928029_34	PHROG	phrog_88	major tail protein	tail
UHGV-1928029_34	UniRef90	UniRef90_A0A3R6A072	Phage tail protein	NA
UHGV-1928029_34	eggNOG-mapper	33035.JPJF01000039_gene278	NA	NA
UHGV-1928029_34	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-1928029_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1928029_35	UniRef90	UniRef90_R6FMT8	HK97 gp10 family phage protein	NA
UHGV-1928029_35	eggNOG-mapper	1235798.C817_04589	NA	NA
UHGV-1928029_35	Structural annotation	TIGR01725	NA	NA
UHGV-1928029_36	eggNOG-mapper	1235798.C817_04588	NA	NA
UHGV-1928029_36	Structural annotation	PF05657	NA	NA
UHGV-1928029_37	PHROG	phrog_19734	NA	unknown function
UHGV-1928029_37	UniRef90	UniRef90_A0A3R6AW46	Head-tail adaptor protein	NA
UHGV-1928029_37	eggNOG-mapper	1235798.C817_04587	NA	NA
UHGV-1928029_37	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1928029_38	PHROG	phrog_2550	NA	unknown function
UHGV-1928029_38	eggNOG-mapper	1235798.C817_04586	NA	NA
UHGV-1928029_38	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1928029_39	PHROG	phrog_10	major head protein	head and packaging
UHGV-1928029_39	UniRef90	UniRef90_A0A143XZI6	Phage capsid family protein	NA
UHGV-1928029_39	eggNOG-mapper	1235798.C817_04585	phage major capsid protein, HK97 family	NA
UHGV-1928029_39	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1928029_39	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1928029_39	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1928029_39	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1928029_40	KOfam	K06904	NA	NA
UHGV-1928029_40	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1928029_40	UniRef90	UniRef90_R9MV12	HK97 family phage prohead protease	NA
UHGV-1928029_40	eggNOG-mapper	1235798.C817_04584	Phage prohead protease, HK97 family	NA
UHGV-1928029_40	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1928029_40	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1928029_40	COG	COG3740	Phage head maturation protease	NA
UHGV-1928029_40	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1928029_41	PHROG	phrog_12	portal protein	head and packaging
UHGV-1928029_41	UniRef90	UniRef90_A0A412UTF1	Phage portal protein	NA
UHGV-1928029_41	eggNOG-mapper	1235798.C817_04583	Phage portal protein, HK97 family	NA
UHGV-1928029_41	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1928029_41	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1928029_41	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1928029_41	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1928029_42	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1928029_42	UniRef90	UniRef90_A0A3R6E565	Terminase large subunit	NA
UHGV-1928029_42	eggNOG-mapper	1235798.C817_04582	Phage Terminase	NA
UHGV-1928029_42	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1928029_42	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1928029_42	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1928029_42	Structural annotation	PF20441, PF03354, MF_04013, TIGR01547, COG4626	NA	NA
UHGV-1928029_43	PHROG	phrog_361	terminase small subunit	head and packaging
UHGV-1928029_43	UniRef90	UniRef90_A0A1Y4FAU6	Terminase	NA
UHGV-1928029_43	eggNOG-mapper	1235798.C817_04581	Phage terminase, small subunit	NA
UHGV-1928029_43	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1928029_43	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1928029	Yes	34,493 bps	44.09%	82.18%	0.9798
UHGV-0203179	No	34,466 bps	44.08%	82.11%	0.9780
UHGV-2215796	No	22,736 bps	41.78%	63.69%	0.9728
UHGV-0062493	No	14,961 bps	46.27%	32.83%	0.9761
UHGV-2238211	No	11,633 bps	48.49%	25.52%	0.9816