vOTU-021744

Overview

vOTU representative UHGV-1976885

No. of genomes 4

Genome length 29,236 bps

Completeness 70.22% (medium-quality)

Host Ruthenibacterium lactatiformans

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-021744
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00060 › vSUBFAM-02338 › vGENUS-05665 › vOTU-021744
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Ruthenibacterium › Ruthenibacterium lactatiformans
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1976885
BioSample	SAMN03922475
Genome length	29,236 bps
CheckV completeness	70.22% (medium-quality)
CheckV contamination	0.00%
CDS count	43
CDS density	93.54%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1976885_1	KOfam	K07497	K07497; putative transposase	NA
UHGV-1976885_1	PHROG	phrog_157	transposase	integration and excision
UHGV-1976885_1	UniRef90	UniRef90_G9RYN2	Integrase catalytic domain-containing protein	NA
UHGV-1976885_1	eggNOG-mapper	411471.SUBVAR_04707	HTH-like domain	NA
UHGV-1976885_1	Pfam	PF13276	HTH-like domain	HTH_21
UHGV-1976885_1	Pfam	PF00665	Integrase core domain	rve
UHGV-1976885_1	Pfam	PF13683	Integrase core domain	rve_3
UHGV-1976885_1	NCBIFam	NF033516.0	IS3 family transposase	NA
UHGV-1976885_1	COG	COG2801	Transposase InsO and inactivated derivatives	NA
UHGV-1976885_1	Structural annotation	PF00665, PF13276, NF033516, COG2801	NA	NA
UHGV-1976885_2	KOfam	K07483	K07483; transposase	NA
UHGV-1976885_2	PHROG	phrog_151	transposase	integration and excision
UHGV-1976885_2	UniRef90	UniRef90_A0A0W7TKZ5	Transposase	NA
UHGV-1976885_2	eggNOG-mapper	1280698.AUJS01000017_gene1806	Transposase	NA
UHGV-1976885_2	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-1976885_2	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1976885_2	Structural annotation	PF02796, MF_00674, NF006928, COG3415	NA	NA
UHGV-1976885_3	UniRef90	UniRef90_A0A143XK80	DZANK-type domain-containing protein	NA
UHGV-1976885_4	PHROG	phrog_2717	NA	unknown function
UHGV-1976885_4	eggNOG-mapper	665956.HMPREF1032_04088	NA	NA
UHGV-1976885_5	UniRef90	UniRef90_UPI001967CCF1	helix-turn-helix domain-containing protein	NA
UHGV-1976885_5	Structural annotation	PF04218, NF040595, COG1710	NA	NA
UHGV-1976885_7	Structural annotation	PF06657	NA	NA
UHGV-1976885_9	AcrCatalog	cluster_167795	NA	NA
UHGV-1976885_10	PHROG	phrog_491	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1976885_10	UniRef90	UniRef90_A0A6N3F7T2	Bacteriophage Mu Gam like protein	NA
UHGV-1976885_10	eggNOG-mapper	665956.HMPREF1032_04094	Bacteriophage Mu Gam like protein	NA
UHGV-1976885_10	Pfam	PF07352	Bacteriophage Mu Gam like protein	Phage_Mu_Gam
UHGV-1976885_10	COG	COG4396	Mu-like prophage host-nuclease inhibitor protein Gam	NA
UHGV-1976885_10	Structural annotation	PF07352, COG4396	NA	NA
UHGV-1976885_11	PHROG	phrog_286	NA	unknown function
UHGV-1976885_11	UniRef90	UniRef90_A0A372V1N5	Regulatory protein GemA	NA
UHGV-1976885_11	eggNOG-mapper	665956.HMPREF1032_04095	NA	NA
UHGV-1976885_11	Pfam	PF06252	Bacteriophage Mu, GemA protein	GemA
UHGV-1976885_11	Structural annotation	PF06252	NA	NA
UHGV-1976885_12	PHROG	phrog_836	late transcriptional activator	transcription regulation
UHGV-1976885_12	UniRef90	UniRef90_G9RT11	Mor domain-containing protein	NA
UHGV-1976885_12	eggNOG-mapper	665956.HMPREF1032_04096	Mor transcription activator family	NA
UHGV-1976885_12	Pfam	PF08765	Mor transcription activator family	Mor
UHGV-1976885_12	COG	COG5566	Transcriptional regulator, middle operon regulator (Mor) family	NA
UHGV-1976885_12	Structural annotation	PF08765, COG5566	NA	NA
UHGV-1976885_13	UniRef90	UniRef90_A0A372V349	NA	NA
UHGV-1976885_13	eggNOG-mapper	665956.HMPREF1032_01633	NA	NA
UHGV-1976885_14	PHROG	phrog_25462	NA	unknown function
UHGV-1976885_14	UniRef90	UniRef90_A0A349GP70	Type VI secretion protein	NA
UHGV-1976885_14	eggNOG-mapper	665956.HMPREF1032_04098	NA	NA
UHGV-1976885_14	Structural annotation	PF01638, MF_01819, NF002926, COG1733	NA	NA
UHGV-1976885_15	PHROG	phrog_426	terminase small subunit	head and packaging
UHGV-1976885_15	UniRef90	UniRef90_UPI000AA50A3B	NA	NA
UHGV-1976885_15	eggNOG-mapper	665956.HMPREF1032_02960	NA	NA
UHGV-1976885_15	Pfam	PF11985	Bacteriophage Mu, Gp27	Phage_Mu_Gp27
UHGV-1976885_15	Structural annotation	PF11985	NA	NA
UHGV-1976885_16	KOfam	K02601	nusG; transcription termination/antitermination protein NusG	NA
UHGV-1976885_16	PHROG	phrog_6386	transcription antiterminator	transcription regulation
UHGV-1976885_16	UniRef90	UniRef90_A0A372V164	Antitermination protein NusG	NA
UHGV-1976885_16	eggNOG-mapper	665956.HMPREF1032_01630	Transcription termination factor nusG	NA
UHGV-1976885_16	Pfam	PF02357	Transcription termination factor nusG	NusG
UHGV-1976885_16	COG	COG0250	Transcription termination/antitermination protein NusG	NA
UHGV-1976885_16	Structural annotation	PF02357, MF_00951, NF033641, COG0250	NA	NA
UHGV-1976885_18	UniRef90	UniRef90_A0A1Y4TKH5	HTH_Tnp_1_2 domain-containing protein	NA
UHGV-1976885_19	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1976885_19	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1976885_19	UniRef90	UniRef90_A0A0D8J425	Terminase	NA
UHGV-1976885_19	eggNOG-mapper	411471.SUBVAR_06998	Phage terminase, large subunit, PBSX family	NA
UHGV-1976885_19	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1976885_19	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1976885_19	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1976885_19	COG	COG1783	Phage terminase large subunit	NA
UHGV-1976885_19	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1976885_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-1976885_21	UniRef90	UniRef90_D1PRG7	Putative phage minor capsid protein	NA
UHGV-1976885_21	eggNOG-mapper	411471.SUBVAR_06996	NA	NA
UHGV-1976885_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1976885_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1976885_22	UniRef90	UniRef90_UPI0006814CA4	phage minor capsid protein	NA
UHGV-1976885_22	eggNOG-mapper	411471.SUBVAR_06995	NA	NA
UHGV-1976885_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1976885_22	COG	COG2369	NA	NA
UHGV-1976885_22	Structural annotation	PF06152	NA	NA
UHGV-1976885_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1976885_24	UniRef90	UniRef90_A0A4R1QTK7	Minor structural protein GP20	NA
UHGV-1976885_24	eggNOG-mapper	411471.SUBVAR_06994	Phage minor structural protein GP20	NA
UHGV-1976885_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1976885_25	PHROG	phrog_422	major head protein	head and packaging
UHGV-1976885_25	eggNOG-mapper	693746.OBV_18090	NA	NA
UHGV-1976885_25	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-1976885_26	PHROG	phrog_10541	NA	unknown function
UHGV-1976885_26	UniRef90	UniRef90_UPI001967F4C6	Rho termination factor N-terminal domain-containing protein	NA
UHGV-1976885_26	Pfam	PF07498	Rho termination factor, N-terminal domain	Rho_N
UHGV-1976885_26	COG	COG5492	NA	NA
UHGV-1976885_26	Structural annotation	PF09124	NA	NA
UHGV-1976885_27	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1976885_27	eggNOG-mapper	1120998.AUFC01000030_gene2237	NA	NA
UHGV-1976885_27	Pfam	PF13262	NA	DUF4054
UHGV-1976885_28	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1976885_29	UniRef90	UniRef90_UPI0019D0AD4B	minor capsid protein	NA
UHGV-1976885_29	eggNOG-mapper	936375.HMPREF1152_1079	NA	NA
UHGV-1976885_29	Structural annotation	PF11114	NA	NA
UHGV-1976885_30	PHROG	phrog_3266	tail completion	connector
UHGV-1976885_30	eggNOG-mapper	1160721.RBI_II00533	NA	NA
UHGV-1976885_30	Structural annotation	PF20765	NA	NA
UHGV-1976885_31	PHROG	phrog_820	major tail protein	tail
UHGV-1976885_31	UniRef90	UniRef90_UPI001140540A	capsid protein	NA
UHGV-1976885_31	eggNOG-mapper	997296.PB1_16179	domain, Protein	NA
UHGV-1976885_31	COG	COG5492	NA	NA
UHGV-1976885_31	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1976885_33	PHROG	phrog_706	NA	unknown function
UHGV-1976885_33	UniRef90	UniRef90_A0A1I0GR35	Bacteriophage Gp15 protein	NA
UHGV-1976885_33	eggNOG-mapper	658655.HMPREF0988_02553	Bacteriophage Gp15 protein	NA
UHGV-1976885_33	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1976885_34	PHROG	phrog_23464	NA	unknown function
UHGV-1976885_34	eggNOG-mapper	1308866.J416_09524	nuclear chromosome segregation	NA
UHGV-1976885_34	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1976885_34	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-1976885_35	UniRef90	UniRef90_A0A3D0W045	Fibronectin type-III domain-containing protein	NA
UHGV-1976885_35	eggNOG-mapper	1161901.I1TLF2_9CAUD	NA	NA
UHGV-1976885_35	Structural annotation	PF02010, PF06995, MF_04116, NF010681, COG3401, COG3499	NA	NA
UHGV-1976885_36	PHROG	phrog_26795	NA	unknown function
UHGV-1976885_36	UniRef90	UniRef90_A0A5J6T4K8	Minor tail protein	NA
UHGV-1976885_36	eggNOG-mapper	1382315.JPOI01000001_gene271	NA	NA
UHGV-1976885_36	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-1976885_38	KOfam	K03646	tolA; colicin import membrane protein	NA
UHGV-1976885_38	PHROG	phrog_9116	tail protein	tail
UHGV-1976885_38	UniRef90	UniRef90_UPI001966D481	tail fiber protein	NA
UHGV-1976885_38	eggNOG-mapper	665956.HMPREF1032_02700	PFAM Tail Collar domain protein	NA
UHGV-1976885_38	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-1976885_38	COG	COG4675	Phage tail collar domain	NA
UHGV-1976885_38	Structural annotation	PF10651, COG4675	NA	NA
UHGV-1976885_39	UniRef90	UniRef90_A0A367X5Q1	Collar domain-containing protein	NA
UHGV-1976885_39	COG	COG4675	Phage tail collar domain	NA
UHGV-1976885_40	KOfam	K14059	int; integrase	NA
UHGV-1976885_40	PHROG	phrog_1	integrase	integration and excision
UHGV-1976885_40	UniRef90	UniRef90_G9RTP6	Tyr recombinase domain-containing protein	NA
UHGV-1976885_40	eggNOG-mapper	665956.HMPREF1032_02930	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1976885_40	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1976885_40	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1976885_40	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1976885_40	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1976885_42	KOfam	K21472	lytH; peptidoglycan LD-endopeptidase LytH [EC:3.4.-.-]	NA
UHGV-1976885_42	UniRef90	UniRef90_G9RTP4	Peptidase_M23 domain-containing protein	NA
UHGV-1976885_42	eggNOG-mapper	665956.HMPREF1032_02928	NA	NA
UHGV-1976885_42	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1976885_42	Structural annotation	PF01551, NF040883, COG0739	NA	NA
UHGV-1976885_43	PHROG	phrog_20258	NA	unknown function
UHGV-1976885_43	eggNOG-mapper	665956.HMPREF1032_02927	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1976885	Yes	29,236 bps	59.04%	70.22%	0.9802
UHGV-0069414	No	24,000 bps	59.26%	57.39%	0.9806
UHGV-0092766	No	14,234 bps	58.04%	36.13%	0.9804
UHGV-1956655	No	14,695 bps	59.53%	27.78%	0.9804