vOTU-022363

Overview

vOTU representative UHGV-0282059

No. of genomes 3

Genome length 35,714 bps

Completeness 85.16% (medium-quality)

Host Duodenibacillus massiliensis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-022363
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00045 › vSUBFAM-00741 › vGENUS-00694 › vOTU-022363
Host taxonomy	Bacteria › Proteobacteria › Gammaproteobacteria › Burkholderiales › Burkholderiaceae › Duodenibacillus › Duodenibacillus massiliensis
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0282059
BioSample	NA
Genome length	35,714 bps
CheckV completeness	85.16% (medium-quality)
CheckV contamination	0.00%
CDS count	54
CDS density	93.31%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0282059_1	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0282059_1	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0282059_2	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0282059_2	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0282059_2	UniRef90	UniRef90_UPI001903C501	single-stranded DNA-binding protein	NA
UHGV-0282059_2	eggNOG-mapper	75379.Tint_0071	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0282059_2	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0282059_2	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0282059_2	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0282059_2	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0282059_2	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0282059_3	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0282059_3	UniRef90	UniRef90_A0A6J5SIA8	Essential recombination function protein	NA
UHGV-0282059_3	eggNOG-mapper	1209989.TepiRe1_1126	ERF superfamily	NA
UHGV-0282059_3	Pfam	PF04404	ERF superfamily	ERF
UHGV-0282059_3	Structural annotation	PF04404, COG5055	NA	NA
UHGV-0282059_7	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0282059_7	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0282059_8	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0282059_8	eggNOG-mapper	1203554.HMPREF1476_00237	Helix-turn-helix domain	NA
UHGV-0282059_8	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0282059_8	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0282059_8	Structural annotation	PF10007, MF_01909, NF040939, COG5529	NA	NA
UHGV-0282059_10	KOfam	K17680	PEO1; twinkle protein [EC:5.6.2.3]	NA
UHGV-0282059_10	PHROG	phrog_5482	NA	unknown function
UHGV-0282059_10	UniRef90	UniRef90_A0A643FF24	AAA family ATPase	NA
UHGV-0282059_10	eggNOG-mapper	398578.Daci_1933	DnaB-like helicase C terminal domain	NA
UHGV-0282059_10	Pfam	PF13481	AAA domain	AAA_25
UHGV-0282059_10	COG	COG0305	Replicative DNA helicase	NA
UHGV-0282059_10	Structural annotation	PF03796, MF_04154, NF004109, COG0305	NA	NA
UHGV-0282059_13	Structural annotation	COG3201	NA	NA
UHGV-0282059_16	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0282059_16	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0282059_16	UniRef90	UniRef90_A0A3B9Q6M1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0282059_16	eggNOG-mapper	279238.Saro_3008	Endodeoxyribonuclease RusA	NA
UHGV-0282059_16	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0282059_16	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0282059_16	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0282059_17	Structural annotation	PF06530, NF008895, COG1595	NA	NA
UHGV-0282059_18	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0282059_18	PHROG	phrog_498	DNA methyltransferase	other
UHGV-0282059_18	UniRef90	UniRef90_K1JXY7	ParB domain-containing protein	NA
UHGV-0282059_18	eggNOG-mapper	742823.HMPREF9465_00951	ParB-like nuclease domain	NA
UHGV-0282059_18	PADLOC	MTase_II_00015	Type II methyltransferase	RM
UHGV-0282059_18	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0282059_18	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0282059_19	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0282059_19	UniRef90	UniRef90_UPI001F4FD8EF	DNA-binding protein	NA
UHGV-0282059_19	eggNOG-mapper	742823.HMPREF9465_00949	NA	NA
UHGV-0282059_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0282059_20	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0282059_20	UniRef90	UniRef90_A0A139K4Q1	Phage terminase, large subunit, PBSX family	NA
UHGV-0282059_20	eggNOG-mapper	556268.OFAG_00321	Terminase RNAseH like domain	NA
UHGV-0282059_20	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0282059_20	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0282059_20	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0282059_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0282059_21	KOfam	K09961	NA	NA
UHGV-0282059_21	PHROG	phrog_146	portal protein	head and packaging
UHGV-0282059_21	UniRef90	UniRef90_UPI001D0BAEDD	NA	NA
UHGV-0282059_21	eggNOG-mapper	1408428.JNJP01000012_gene1113	NA	NA
UHGV-0282059_21	Pfam	PF06381	Anti-CBASS protein Acb1-like	Abc1-like
UHGV-0282059_21	COG	COG3567	NA	NA
UHGV-0282059_21	Structural annotation	PF06381, MF_04135, TIGR01555, COG3567	NA	NA
UHGV-0282059_22	PHROG	phrog_324	head morphogenesis	head and packaging
UHGV-0282059_22	UniRef90	UniRef90_A0A1Y4CYL3	Phage_Mu_F domain-containing protein	NA
UHGV-0282059_22	eggNOG-mapper	1408428.JNJP01000012_gene1114	protein homolog of phage Mu protein gp30	NA
UHGV-0282059_22	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0282059_22	COG	COG2369	NA	NA
UHGV-0282059_22	Structural annotation	PF06152, TIGR01641, COG2369	NA	NA
UHGV-0282059_23	KOfam	K09960	NA	NA
UHGV-0282059_23	PHROG	phrog_2229	head maturation protease	head and packaging
UHGV-0282059_23	UniRef90	UniRef90_UPI001E52763D	NA	NA
UHGV-0282059_23	eggNOG-mapper	1408428.JNJP01000012_gene1115	NA	NA
UHGV-0282059_23	Pfam	PF09979	NA	DUF2213
UHGV-0282059_23	COG	COG3566	NA	NA
UHGV-0282059_23	Structural annotation	PF09979, TIGR01543, COG3566	NA	NA
UHGV-0282059_24	PHROG	phrog_2122	minor head protein	head and packaging
UHGV-0282059_24	eggNOG-mapper	1408428.JNJP01000012_gene1116	NA	NA
UHGV-0282059_25	PHROG	phrog_264	major head protein	head and packaging
UHGV-0282059_25	UniRef90	UniRef90_UPI0010350299	NA	NA
UHGV-0282059_25	eggNOG-mapper	1205683.CAKR01000013_gene1189	Protein conserved in bacteria	NA
UHGV-0282059_25	Pfam	PF09950	NA	DUF2184
UHGV-0282059_25	COG	COG4834	NA	NA
UHGV-0282059_25	Structural annotation	PF09950, MF_04119, NF041155, COG4834	NA	NA
UHGV-0282059_27	PHROG	phrog_302	virion structural protein	head and packaging
UHGV-0282059_27	eggNOG-mapper	469610.HMPREF0189_01191	NA	NA
UHGV-0282059_27	Pfam	PF13262	NA	DUF4054
UHGV-0282059_27	Structural annotation	PF13262	NA	NA
UHGV-0282059_28	PHROG	phrog_222	tail protein	tail
UHGV-0282059_28	UniRef90	UniRef90_A0A6J5RNL9	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0282059_28	eggNOG-mapper	1205683.CAKR01000013_gene1186	NA	NA
UHGV-0282059_29	PHROG	phrog_1912	head protein	head and packaging
UHGV-0282059_29	eggNOG-mapper	762966.HMPREF9439_01040	NA	NA
UHGV-0282059_29	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0282059_30	PHROG	phrog_1876	NA	unknown function
UHGV-0282059_30	eggNOG-mapper	762966.HMPREF9439_01041	NA	NA
UHGV-0282059_30	Structural annotation	PF16807	NA	NA
UHGV-0282059_31	PHROG	phrog_205	virion structural protein	head and packaging
UHGV-0282059_31	UniRef90	UniRef90_UPI0013F5A4D1	NA	NA
UHGV-0282059_31	eggNOG-mapper	742823.HMPREF9465_00935	NA	NA
UHGV-0282059_31	Pfam	PF11863	NA	DUF3383
UHGV-0282059_31	Structural annotation	PF11863, COG4386	NA	NA
UHGV-0282059_32	PHROG	phrog_1964	virion structural protein	head and packaging
UHGV-0282059_32	eggNOG-mapper	762966.HMPREF9439_01045	NA	NA
UHGV-0282059_32	Structural annotation	PF11681, TIGR01603, COG3157	NA	NA
UHGV-0282059_33	PHROG	phrog_1932	tail assembly chaperone	tail
UHGV-0282059_33	eggNOG-mapper	742823.HMPREF9465_00933	NA	NA
UHGV-0282059_33	Pfam	PF21822	Phage tail assembly chaperone protein, TAC	Phage_TAC_15
UHGV-0282059_33	Structural annotation	PF21822	NA	NA
UHGV-0282059_34	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0282059_34	eggNOG-mapper	742823.HMPREF9465_00932	domain protein	NA
UHGV-0282059_34	COG	COG1511	NA	NA
UHGV-0282059_35	PHROG	phrog_1830	NA	unknown function
UHGV-0282059_35	UniRef90	UniRef90_F3QJE7	Conserved domain protein	NA
UHGV-0282059_35	eggNOG-mapper	469610.HMPREF0189_01201	NA	NA
UHGV-0282059_35	Structural annotation	PF21821, TIGR01633, COG3499	NA	NA
UHGV-0282059_36	PHROG	phrog_349	virion structural protein	head and packaging
UHGV-0282059_36	eggNOG-mapper	1236501.BAJU01000020_gene2009	NA	NA
UHGV-0282059_37	PHROG	phrog_196	virion structural protein	head and packaging
UHGV-0282059_37	UniRef90	UniRef90_F3QJE9	Conserved domain protein	NA
UHGV-0282059_37	eggNOG-mapper	469610.HMPREF0189_01203	NA	NA
UHGV-0282059_37	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0282059_38	PHROG	phrog_3216	baseplate assembly protein	tail
UHGV-0282059_38	UniRef90	UniRef90_K1JIF5	Phage_spike domain-containing protein	NA
UHGV-0282059_38	eggNOG-mapper	742823.HMPREF9465_00928	Baseplate assembly protein	NA
UHGV-0282059_38	Pfam	PF18715	Phage spike trimer	Phage_spike
UHGV-0282059_38	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0282059_38	Structural annotation	PF18352, TIGR01644, COG4384	NA	NA
UHGV-0282059_39	PHROG	phrog_120	baseplate protein	tail
UHGV-0282059_39	eggNOG-mapper	1203554.HMPREF1476_01519	NA	NA
UHGV-0282059_39	Structural annotation	PF10761, TIGR03357, COG3628	NA	NA
UHGV-0282059_40	PHROG	phrog_6	baseplate protein	tail
UHGV-0282059_40	UniRef90	UniRef90_K1KI67	Baseplate_J domain-containing protein	NA
UHGV-0282059_40	eggNOG-mapper	742823.HMPREF9465_00927	Baseplate J-like protein	NA
UHGV-0282059_40	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0282059_40	COG	COG3299	NA	NA
UHGV-0282059_40	Structural annotation	PF04865, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0282059_41	PHROG	phrog_587	structural protein	head and packaging
UHGV-0282059_41	UniRef90	UniRef90_UPI0013F5E2B1	NA	NA
UHGV-0282059_41	eggNOG-mapper	742823.HMPREF9465_00926	NA	NA
UHGV-0282059_41	Pfam	PF11041	NA	DUF2612
UHGV-0282059_41	Structural annotation	PF11041, TIGR02242, COG3948	NA	NA
UHGV-0282059_42	UniRef90	UniRef90_UPI0013F616D1	short-chain fatty acid transporter	NA
UHGV-0282059_42	eggNOG-mapper	762966.HMPREF9439_01055	tail collar domain protein	NA
UHGV-0282059_42	COG	COG4675	Phage tail collar domain	NA
UHGV-0282059_42	Structural annotation	PF14600	NA	NA
UHGV-0282059_43	PHROG	phrog_1419	tail protein	tail
UHGV-0282059_43	eggNOG-mapper	742823.HMPREF9465_00923	Membrane	NA
UHGV-0282059_43	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0282059_44	PHROG	phrog_19618	tail collar protein	tail
UHGV-0282059_44	UniRef90	UniRef90_UPI000DEA0D44	phage tail protein	NA
UHGV-0282059_44	eggNOG-mapper	556269.ACDQ01000009_gene1944	Phage Tail Collar Domain	NA
UHGV-0282059_44	Pfam	PF07484	Phage Tail Collar Domain	Collar
UHGV-0282059_44	COG	COG4675	Phage tail collar domain	NA
UHGV-0282059_44	Structural annotation	PF07484, COG4675	NA	NA
UHGV-0282059_45	PHROG	phrog_2143	NA	unknown function
UHGV-0282059_45	eggNOG-mapper	742823.HMPREF9465_00917	NA	NA
UHGV-0282059_46	PHROG	phrog_199	holin	lysis
UHGV-0282059_46	UniRef90	UniRef90_UPI000A02732D	phage holin family protein	NA
UHGV-0282059_46	eggNOG-mapper	742821.HMPREF9464_01076	Bacteriophage holin family	NA
UHGV-0282059_46	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0282059_46	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0282059_46	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0282059_46	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0282059_47	KOfam	K08640	E3.4.17.14; zinc D-Ala-D-Ala carboxypeptidase [EC:3.4.17.14]	NA
UHGV-0282059_47	PHROG	phrog_894	endolysin	lysis
UHGV-0282059_47	UniRef90	UniRef90_A0A3B9QA10	Peptidase_M15_3 domain-containing protein	NA
UHGV-0282059_47	eggNOG-mapper	641832.C3VVT1_9CAUD	Peptidase M15	NA
UHGV-0282059_47	Pfam	PF08291	Peptidase M15	Peptidase_M15_3
UHGV-0282059_47	Structural annotation	PF05951, COG3108	NA	NA
UHGV-0282059_48	eggNOG-mapper	742821.HMPREF9464_01810	NA	NA
UHGV-0282059_54	UniRef90	UniRef90_UPI001F3219F6	HNH endonuclease	NA
UHGV-0282059_54	eggNOG-mapper	742823.HMPREF9465_01974	NA	NA
UHGV-0282059_54	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0282059_54	Structural annotation	MF_00950, TIGR00405, COG5475	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0282059	Yes	35,714 bps	56.31%	85.16%	0.9774
UHGV-0168163	No	35,238 bps	56.28%	84.03%	0.9778
UHGV-0168772	No	10,178 bps	54.64%	22.62%	0.9800