vOTU-022702

Overview

No. of genomes 3

Genome length 28,501 bps

Completeness 74.38% (medium-quality)

Host Staphylococcus aureus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-022702
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-05730 › vGENUS-13047 › vSUBGEN-58428 › vOTU-022702
Host taxonomy	Bacteria › Firmicutes › Bacilli › Staphylococcales › Staphylococcaceae › Staphylococcus › Staphylococcus aureus
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-0080906
BioSample	SAMEA3136636
Genome length	28,501 bps
CheckV completeness	74.38% (medium-quality)
CheckV contamination	0.00%
CDS count	38
CDS density	86.46%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0080906_2	Pfam	PF02839	Carbohydrate-binding module family 5/12	CBM_5_12
UHGV-0080906_3	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0080906_3	eggNOG-mapper	1235835.C814_03388	NA	NA
UHGV-0080906_7	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0080906_7	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0080906_7	UniRef90	UniRef90_A0A1C5T0C1	Holliday junction resolvase	NA
UHGV-0080906_7	eggNOG-mapper	1443125.Z962_p0037	Endodeoxyribonuclease RusA	NA
UHGV-0080906_7	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0080906_7	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0080906_7	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0080906_8	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0080906_8	UniRef90	UniRef90_UPI00156FA9A2	terminase large subunit	NA
UHGV-0080906_8	eggNOG-mapper	1211817.CCAT010000007_gene1040	Terminase	NA
UHGV-0080906_8	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0080906_8	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0080906_8	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0080906_8	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0080906_9	PHROG	phrog_12	portal protein	head and packaging
UHGV-0080906_9	UniRef90	UniRef90_R6Z5U3	Phage portal protein	NA
UHGV-0080906_9	eggNOG-mapper	1536774.H70357_10620	Phage portal protein	NA
UHGV-0080906_9	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0080906_9	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0080906_9	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0080906_10	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0080906_10	PHROG	phrog_1794	amidase	lysis
UHGV-0080906_10	UniRef90	UniRef90_A0A3N0I5S2	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0080906_10	eggNOG-mapper	573061.Clocel_3960	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0080906_10	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0080906_10	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0080906_10	Structural annotation	PF01510, PF01471, MF_04111, COG5632, COG3409	NA	NA
UHGV-0080906_11	KOfam	K06904	NA	NA
UHGV-0080906_11	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0080906_11	UniRef90	UniRef90_A0A415G8A3	HK97 family phage prohead protease	NA
UHGV-0080906_11	eggNOG-mapper	1123288.SOV_2c03620	Caudovirus prohead serine protease	NA
UHGV-0080906_11	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0080906_11	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0080906_11	COG	COG3740	Phage head maturation protease	NA
UHGV-0080906_11	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0080906_12	PHROG	phrog_10	major head protein	head and packaging
UHGV-0080906_12	UniRef90	UniRef90_UPI00069461CE	phage major capsid protein	NA
UHGV-0080906_12	eggNOG-mapper	1157490.EL26_20710	Phage capsid family	NA
UHGV-0080906_12	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0080906_12	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0080906_12	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0080906_12	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0080906_13	UniRef90	UniRef90_UPI001E432EFF	phage head-tail connector protein	NA
UHGV-0080906_14	UniRef90	UniRef90_UPI00156F5992	head-tail adaptor protein	NA
UHGV-0080906_14	eggNOG-mapper	1536774.H70357_10645	NA	NA
UHGV-0080906_14	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0080906_14	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0080906_14	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0080906_15	Structural annotation	TIGR01725	NA	NA
UHGV-0080906_16	Structural annotation	PF05657	NA	NA
UHGV-0080906_17	PHROG	phrog_88	major tail protein	tail
UHGV-0080906_17	UniRef90	UniRef90_A0A843GGC8	S-l_SbsC_C domain-containing protein	NA
UHGV-0080906_17	eggNOG-mapper	1230342.CTM_17012	phage major tail protein, phi13 family	NA
UHGV-0080906_17	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0080906_17	COG	COG5492	NA	NA
UHGV-0080906_17	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0080906_19	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-0080906_19	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-0080906_19	UniRef90	UniRef90_UPI001EDCC813	phage tail tape measure protein	NA
UHGV-0080906_19	eggNOG-mapper	397290.C810_00429	Phage-related minor tail protein	NA
UHGV-0080906_19	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0080906_19	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0080906_20	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0080906_20	UniRef90	UniRef90_U2JPC0	Phage tail component protein	NA
UHGV-0080906_20	eggNOG-mapper	742733.HMPREF9469_05019	Phage tail protein	NA
UHGV-0080906_20	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0080906_20	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0080906_21	PHROG	phrog_538	minor tail protein	tail
UHGV-0080906_21	UniRef90	UniRef90_UPI0004813F81	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0080906_21	eggNOG-mapper	411460.RUMTOR_01333	NA	NA
UHGV-0080906_21	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0080906_24	KOfam	K03581	recD; exodeoxyribonuclease V alpha subunit [EC:3.1.11.5]	NA
UHGV-0080906_24	PHROG	phrog_4412	exonuclease V	DNA, RNA and nucleotide metabolism
UHGV-0080906_24	UniRef90	UniRef90_A0A173XIX1	Exodeoxyribonuclease V alpha chain	NA
UHGV-0080906_24	eggNOG-mapper	1235799.C818_02707	DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity	NA
UHGV-0080906_24	PADLOC	cluster10	RecD_0_IVD	CRISPR-CAS
UHGV-0080906_24	Pfam	PF13604	AAA domain	AAA_30
UHGV-0080906_24	Pfam	PF13538	UvrD-like helicase C-terminal domain	UvrD_C_2
UHGV-0080906_24	COG	COG0507	ATPase/5'-3' helicase helicase subunit RecD of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0080906_26	KOfam	K07171	mazF, ndoA, chpA; mRNA interferase MazF [EC:3.1.-.-]	NA
UHGV-0080906_26	PHROG	phrog_1936	MazF-like growth inhibitor	moron, auxiliary metabolic gene and host takeover
UHGV-0080906_26	Pfam	PF02452	PemK-like, MazF-like toxin of type II toxin-antitoxin system	PemK_toxin
UHGV-0080906_26	COG	COG2337	mRNA-degrading endonuclease MazF, toxin component of the MazEF toxin-antitoxin module	NA
UHGV-0080906_27	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-0080906_27	PHROG	phrog_239	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0080906_27	UniRef90	UniRef90_A0A7T7XLX7	AAA family ATPase	NA
UHGV-0080906_27	eggNOG-mapper	1444712.BN1013_00379	NA	NA
UHGV-0080906_27	Pfam	PF13481	AAA domain	AAA_25
UHGV-0080906_27	COG	COG3598	RecA-family ATPase	NA
UHGV-0080906_27	Structural annotation	PF03796, PF05848, MF_01498, TIGR00416, NF038268, COG1066	NA	NA
UHGV-0080906_28	PHROG	phrog_3490	ERCC4-type nuclease	DNA, RNA and nucleotide metabolism
UHGV-0080906_28	UniRef90	UniRef90_A0A3D5WJ50	ERCC4 domain-containing protein	NA
UHGV-0080906_28	eggNOG-mapper	1232453.BAIF02000057_gene1143	NA	NA
UHGV-0080906_28	Pfam	PF02732	ERCC4 domain	ERCC4
UHGV-0080906_31	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0080906_31	PHROG	phrog_2328	transcriptional repressor	transcription regulation
UHGV-0080906_31	UniRef90	UniRef90_R9KL24	HTH cro/C1-type domain-containing protein	NA
UHGV-0080906_31	eggNOG-mapper	397290.C810_01441	Helix-turn-helix XRE-family like proteins	NA
UHGV-0080906_31	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0080906_31	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0080906_31	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0080906_37	KOfam	K14059	int; integrase	NA
UHGV-0080906_37	PHROG	phrog_1	integrase	integration and excision
UHGV-0080906_37	UniRef90	UniRef90_UPI000563D65F	site-specific integrase	NA
UHGV-0080906_37	eggNOG-mapper	1410612.JNKO01000002_gene2429	DNA integration	NA
UHGV-0080906_37	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0080906_37	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0080906_37	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4974	NA	NA
UHGV-0080906_38	eggNOG-mapper	1378168.N510_00033	DNA integration	NA
UHGV-0080906_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0080906	Yes	28,501 bps	41.10%	74.38%	0.9605
UHGV-0184265	No	14,054 bps	43.20%	36.66%	0.9516
UHGV-1639312	No	14,607 bps	40.60%	26.85%	0.9393