vOTU-022734

Overview

vOTU representative UHGV-0219221

No. of genomes 3

Genome length 38,528 bps

Completeness 66.84% (medium-quality)

Host Faecalibacterium

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-022734
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-00007 › vGENUS-00139 › vOTU-022734
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Faecalibacterium
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0219221
BioSample	SAMEA4813766
Genome length	38,528 bps
CheckV completeness	66.84% (medium-quality)
CheckV contamination	0.00%
CDS count	73
CDS density	81.77%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0219221_1	PHROG	phrog_16490	NA	unknown function
UHGV-0219221_1	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-0219221_2	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-0219221_3	eggNOG-mapper	1408437.JNJN01000043_gene801	NA	NA
UHGV-0219221_4	eggNOG-mapper	1415774.U728_1699	NA	NA
UHGV-0219221_6	KOfam	K13525	VCP, CDC48; transitional endoplasmic reticulum ATPase	NA
UHGV-0219221_6	PHROG	phrog_3757	NA	unknown function
UHGV-0219221_6	UniRef90	UniRef90_A0A4Z0Y6M2	ATP-dependent zinc metalloprotease FtsH 3	NA
UHGV-0219221_6	eggNOG-mapper	768710.DesyoDRAFT_1087	ATPase family associated with various cellular activities (AAA)	NA
UHGV-0219221_6	PADLOC	IetA_00002	NA	ietAS
UHGV-0219221_6	Pfam	PF00004	ATPase family associated with various cellular activities (AAA)	AAA
UHGV-0219221_6	COG	COG0464	AAA+-type ATPase, SpoVK/Ycf46/Vps4 family	NA
UHGV-0219221_6	Structural annotation	PF00004, MF_00553, TIGR01242, COG1222	NA	NA
UHGV-0219221_7	Structural annotation	PF07878	NA	NA
UHGV-0219221_9	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0219221_9	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0219221_9	UniRef90	UniRef90_A0A1G6FF50	Chromosome partitioning protein	NA
UHGV-0219221_9	eggNOG-mapper	1408423.JHYA01000021_gene392	Cellulose biosynthesis protein BcsQ	NA
UHGV-0219221_9	Pfam	PF13614	AAA domain	AAA_31
UHGV-0219221_9	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0219221_9	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0219221_11	PHROG	phrog_4402	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0219221_11	UniRef90	UniRef90_A0A0H5Q331	Rep_3 domain-containing protein	NA
UHGV-0219221_11	eggNOG-mapper	999413.HMPREF1094_04438	Initiator Replication protein	NA
UHGV-0219221_11	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0219221_11	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0219221_11	COG	COG5527	Protein involved in initiation of plasmid replication	NA
UHGV-0219221_11	Structural annotation	PF01051, PF21205, NF010305, COG5527	NA	NA
UHGV-0219221_12	UniRef90	UniRef90_A0A2A7AM70	HTH cro/C1-type domain-containing protein	NA
UHGV-0219221_12	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0219221_12	Structural annotation	PF13560, MF_00535, NF041951, COG1476	NA	NA
UHGV-0219221_15	Structural annotation	PF16311, NF038219	NA	NA
UHGV-0219221_16	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0219221_16	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0219221_17	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0219221_17	UniRef90	UniRef90_UPI001C009F10	helix-turn-helix transcriptional regulator	NA
UHGV-0219221_17	eggNOG-mapper	411460.RUMTOR_00063	helix-turn-helix	NA
UHGV-0219221_17	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0219221_17	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0219221_17	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0219221_18	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0219221_18	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0219221_18	UniRef90	UniRef90_A0A844D5R9	Phage regulatory protein/antirepressor Ant	NA
UHGV-0219221_18	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-0219221_18	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0219221_18	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0219221_18	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0219221_18	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0219221_18	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0219221_19	Structural annotation	PF10922	NA	NA
UHGV-0219221_20	Structural annotation	TIGR03826	NA	NA
UHGV-0219221_22	eggNOG-mapper	760568.Desku_0919	NA	NA
UHGV-0219221_22	Structural annotation	PF03787, TIGR02581, COG1604	NA	NA
UHGV-0219221_24	Structural annotation	PF14143	NA	NA
UHGV-0219221_25	Pfam	PF01096	Transcription factor S-II (TFIIS)	TFIIS_C
UHGV-0219221_25	COG	COG1327	Transcriptional regulator NrdR, contains Zn-ribbon and ATP-cone domains	NA
UHGV-0219221_25	Structural annotation	PF04606, NF007241	NA	NA
UHGV-0219221_27	Pfam	PF13451	Probable zinc-ribbon domain	zf-trcl
UHGV-0219221_27	COG	COG1278	Cold shock protein, CspA family	NA
UHGV-0219221_27	Structural annotation	PF13451	NA	NA
UHGV-0219221_28	PHROG	phrog_155	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0219221_28	UniRef90	UniRef90_E2ZNS9	Erf family protein	NA
UHGV-0219221_28	eggNOG-mapper	748224.HMPREF9436_03360	ERF superfamily	NA
UHGV-0219221_28	Pfam	PF04404	ERF superfamily	ERF
UHGV-0219221_28	Structural annotation	PF04404, COG4712	NA	NA
UHGV-0219221_29	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0219221_29	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0219221_29	UniRef90	UniRef90_A0A6N7TNV3	Single-stranded DNA-binding protein	NA
UHGV-0219221_29	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0219221_29	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0219221_29	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0219221_29	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0219221_29	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0219221_29	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0219221_30	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0219221_30	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0219221_30	UniRef90	UniRef90_D4JYK0	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0219221_30	eggNOG-mapper	718252.FP2_16350	C-5 cytosine-specific DNA methylase	NA
UHGV-0219221_30	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0219221_30	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0219221_30	NCBIFam	TIGR00675.1	DNA (cytosine-5-)-methyltransferase	NA
UHGV-0219221_30	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0219221_30	Structural annotation	PF00145, TIGR00675, COG0270	NA	NA
UHGV-0219221_32	Structural annotation	PF20331, COG5264	NA	NA
UHGV-0219221_33	PHROG	phrog_843	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0219221_33	UniRef90	UniRef90_UPI001159D907	Holliday junction resolvase RecU	NA
UHGV-0219221_33	eggNOG-mapper	929506.CbC4_1203	Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation	NA
UHGV-0219221_33	Structural annotation	PF03838, MF_00130, NF002581, COG3331	NA	NA
UHGV-0219221_37	PHROG	phrog_4068	NA	unknown function
UHGV-0219221_37	Structural annotation	PF06657	NA	NA
UHGV-0219221_39	Structural annotation	MF_00085, NF003076, COG0231	NA	NA
UHGV-0219221_41	Structural annotation	PF16677	NA	NA
UHGV-0219221_42	KOfam	K17080	PHB1; prohibitin 1	NA
UHGV-0219221_42	PHROG	phrog_200	lipoprotein	other
UHGV-0219221_42	UniRef90	UniRef90_D4KCF4	Membrane protease subunits, stomatin/prohibitin homologs	NA
UHGV-0219221_42	eggNOG-mapper	657322.FPR_23460	prohibitin homologues	NA
UHGV-0219221_42	Pfam	PF01145	SPFH domain / Band 7 family	Band_7
UHGV-0219221_42	COG	COG0330	Regulator of protease activity HflC, stomatin/prohibitin superfamily	NA
UHGV-0219221_42	Structural annotation	PF01145, MF_01562, NF008181, COG0330	NA	NA
UHGV-0219221_48	UniRef90	UniRef90_A0A837F7R6	NA	NA
UHGV-0219221_48	Pfam	PF04448	NA	DUF551
UHGV-0219221_48	Structural annotation	NF041588	NA	NA
UHGV-0219221_51	UniRef90	UniRef90_Q5YA82	28	NA
UHGV-0219221_52	PHROG	phrog_678	replication initiation O-like	DNA, RNA and nucleotide metabolism
UHGV-0219221_52	Pfam	PF19808	NA	DUF6291
UHGV-0219221_52	Structural annotation	PF19808	NA	NA
UHGV-0219221_53	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0219221_53	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0219221_53	UniRef90	UniRef90_A0A564SBR1	Replicative DNA helicase	NA
UHGV-0219221_53	eggNOG-mapper	1203606.HMPREF1526_01325	Participates in initiation and elongation during chromosome replication	NA
UHGV-0219221_53	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0219221_53	COG	COG0305	Replicative DNA helicase	NA
UHGV-0219221_53	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0219221_56	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0219221_56	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0219221_63	UniRef90	UniRef90_UPI00156DD7EE	zinc ribbon domain-containing protein	NA
UHGV-0219221_63	eggNOG-mapper	1042156.CXIVA_15870	sh3 domain protein	NA
UHGV-0219221_63	COG	COG3103	NA	NA
UHGV-0219221_64	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0219221_64	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0219221_64	UniRef90	UniRef90_A0A1Y4EUA0	Bro-N domain-containing protein	NA
UHGV-0219221_64	eggNOG-mapper	1289596.M1PKL6_9CAUD	BRO family, N-terminal domain	NA
UHGV-0219221_64	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0219221_64	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0219221_64	Structural annotation	PF02498, PF03374, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0219221_65	Structural annotation	PF19807, NF041793, COG4877	NA	NA
UHGV-0219221_67	Structural annotation	PF20075	NA	NA
UHGV-0219221_68	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0219221_68	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0219221_68	UniRef90	UniRef90_A0A3D0LYX8	Resolvase	NA
UHGV-0219221_68	eggNOG-mapper	1410633.JHWR01000012_gene95	Resolvase, N terminal domain	NA
UHGV-0219221_68	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0219221_68	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0219221_68	Structural annotation	PF00239, PF02796, MF_00489, NF009949, COG1961	NA	NA
UHGV-0219221_69	Structural annotation	NF009949	NA	NA
UHGV-0219221_70	PHROG	phrog_3675	NA	unknown function
UHGV-0219221_70	UniRef90	UniRef90_UPI001D08FCA4	YjcQ family protein	NA
UHGV-0219221_70	eggNOG-mapper	1235802.C823_04879	YjcQ protein	NA
UHGV-0219221_70	Pfam	PF09639	YjcQ protein	YjcQ
UHGV-0219221_70	Structural annotation	PF09639, TIGR04176, COG2345	NA	NA
UHGV-0219221_71	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0219221_71	UniRef90	UniRef90_A0A810QA10	Terminase	NA
UHGV-0219221_71	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0219221_71	COG	COG5410	NA	NA
UHGV-0219221_71	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0219221_73	PHROG	phrog_64	portal protein	head and packaging
UHGV-0219221_73	UniRef90	UniRef90_A0A371ILT4	Phage portal protein	NA
UHGV-0219221_73	eggNOG-mapper	1121866.AUGK01000003_gene1429	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0219221_73	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0219221_73	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0219221	Yes	38,528 bps	47.65%	66.84%	0.9740
UHGV-1388811	No	30,201 bps	47.38%	52.37%	0.9779
UHGV-0185268	No	23,283 bps	47.40%	40.40%	0.9777