vOTU-023175

Overview

vOTU representative UHGV-1964026

No. of genomes 4

Genome length 32,236 bps

Completeness 61.86% (medium-quality)

Host CAG-115 sp003531585

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-023175
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00060 › vSUBFAM-03663 › vOTU-023175
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › CAG-115 › CAG-115 sp003531585
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1964026
BioSample	SAMN03922462
Genome length	32,236 bps
CheckV completeness	61.86% (medium-quality)
CheckV contamination	0.00%
CDS count	49
CDS density	94.83%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1964026_1	PHROG	phrog_2412	NA	unknown function
UHGV-1964026_2	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1964026_2	UniRef90	UniRef90_UPI001C9AEC20	RNA polymerase subunit sigma-24	NA
UHGV-1964026_2	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-1964026_2	Structural annotation	PF05263	NA	NA
UHGV-1964026_3	UniRef90	UniRef90_UPI00164C2CD3	zinc finger domain-containing protein	NA
UHGV-1964026_3	Structural annotation	PF14354, NF007260	NA	NA
UHGV-1964026_6	PHROG	phrog_3136	NA	unknown function
UHGV-1964026_6	UniRef90	UniRef90_UPI001C02A61B	ASCH domain-containing protein	NA
UHGV-1964026_6	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1964026_6	Structural annotation	PF08819, MF_00684, NF008917, COG4933	NA	NA
UHGV-1964026_9	PHROG	phrog_24490	NA	unknown function
UHGV-1964026_10	PHROG	phrog_8684	NA	unknown function
UHGV-1964026_10	UniRef90	UniRef90_A0A3D4KYC5	YopX domain-containing protein	NA
UHGV-1964026_10	eggNOG-mapper	411473.RUMCAL_00280	YopX protein	NA
UHGV-1964026_10	Pfam	PF09643	YopX protein	YopX
UHGV-1964026_10	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1964026_10	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1964026_11	PHROG	phrog_3301	pyrophosphatase	other
UHGV-1964026_11	eggNOG-mapper	411459.RUMOBE_01042	Mazg nucleotide pyrophosphohydrolase	NA
UHGV-1964026_11	COG	COG1694	NTP pyrophosphatase, house-cleaning of non-canonical NTPs	NA
UHGV-1964026_11	Structural annotation	COG1694	NA	NA
UHGV-1964026_12	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1964026_12	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1964026_12	UniRef90	UniRef90_A0A2V2FY53	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1964026_12	eggNOG-mapper	272563.CD630_29310	Endodeoxyribonuclease RusA	NA
UHGV-1964026_12	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1964026_12	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1964026_12	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1964026_13	PHROG	phrog_20437	DNA replication initiation	DNA, RNA and nucleotide metabolism
UHGV-1964026_13	UniRef90	UniRef90_B1C7J8	DnaD domain protein	NA
UHGV-1964026_13	eggNOG-mapper	445971.ANASTE_00700	NA	NA
UHGV-1964026_13	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-1964026_13	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1964026_13	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-1964026_14	UniRef90	UniRef90_R5GS36	Single-stranded DNA-binding protein	NA
UHGV-1964026_14	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1964026_14	Structural annotation	NF006445	NA	NA
UHGV-1964026_15	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1964026_15	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1964026_15	UniRef90	UniRef90_UPI001B484EF1	Single-stranded DNA-binding protein	NA
UHGV-1964026_15	eggNOG-mapper	718252.FP2_06770	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-1964026_15	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1964026_15	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1964026_15	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1964026_16	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-1964026_16	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1964026_16	UniRef90	UniRef90_A0A3N4Q182	Recombinase	NA
UHGV-1964026_16	eggNOG-mapper	768704.Desmer_4478	RecT family	NA
UHGV-1964026_16	Pfam	PF03837	RecT family	RecT
UHGV-1964026_16	NCBIFam	TIGR00616.1	recombinase, phage RecT family	NA
UHGV-1964026_16	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-1964026_17	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1964026_17	UniRef90	UniRef90_A0A7C6PS99	Endonuclease	NA
UHGV-1964026_17	eggNOG-mapper	857293.CAAU_0780	YqaJ-like viral recombinase domain	NA
UHGV-1964026_17	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-1964026_17	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-1964026_17	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1964026_17	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-1964026_19	KOfam	K24451	zim; modification methylase	NA
UHGV-1964026_19	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1964026_19	UniRef90	UniRef90_A0A374BT14	Methyltransferase	NA
UHGV-1964026_19	eggNOG-mapper	411473.RUMCAL_00273	Belongs to the N(4) N(6)-methyltransferase family	NA
UHGV-1964026_19	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-1964026_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1964026_19	COG	COG0863	DNA modification methylase	NA
UHGV-1964026_19	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1964026_20	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1964026_20	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1964026_20	UniRef90	UniRef90_A0A1I2DWG9	Superfamily II DNA or RNA helicase	NA
UHGV-1964026_20	eggNOG-mapper	411473.RUMCAL_00274	DEAD-like helicases superfamily	NA
UHGV-1964026_20	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1964026_20	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1964026_20	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1964026_20	Structural annotation	PF18766, PF16203, MF_01821, TIGR04095, COG0553	NA	NA
UHGV-1964026_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1964026_21	PHROG	phrog_116	DNA methyltransferase	other
UHGV-1964026_21	UniRef90	UniRef90_A0A0U1L2E6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1964026_21	eggNOG-mapper	1123288.SOV_2c03860	C-5 cytosine-specific DNA methylase	NA
UHGV-1964026_21	PADLOC	MTase_II_00164	Type II methyltransferase	RM
UHGV-1964026_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1964026_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1964026_21	Structural annotation	PF00145, MF_00351, TIGR00675, COG0270	NA	NA
UHGV-1964026_25	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1964026_25	PHROG	phrog_15001	endolysin	lysis
UHGV-1964026_25	UniRef90	UniRef90_R5L4J5	N-acetylmuramoyl-L-alanine amidase domain protein	NA
UHGV-1964026_25	eggNOG-mapper	1235835.C814_01292	Ami_2	NA
UHGV-1964026_25	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1964026_25	COG	COG1388	LysM repeat	NA
UHGV-1964026_25	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1964026_26	PHROG	phrog_199	holin	lysis
UHGV-1964026_26	UniRef90	UniRef90_R5GZX1	Toxin secretion/phage lysis holin	NA
UHGV-1964026_26	eggNOG-mapper	1120746.CCNL01000014_gene2113	toxin secretion phage lysis holin	NA
UHGV-1964026_26	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1964026_26	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1964026_26	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1964026_26	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1964026_28	PHROG	phrog_4492	tail fiber protein	tail
UHGV-1964026_28	eggNOG-mapper	756499.Desde_1105	NA	NA
UHGV-1964026_28	Structural annotation	PF21621, PF21253, MF_01537, NF007875, COG3123	NA	NA
UHGV-1964026_29	PHROG	phrog_6616	tail protein	tail
UHGV-1964026_29	eggNOG-mapper	86416.Clopa_0591	Phage minor structural protein	NA
UHGV-1964026_29	COG	COG4926	Phage-related protein	NA
UHGV-1964026_29	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1964026_30	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1964026_31	PHROG	phrog_1272	tail length tape measure protein	tail
UHGV-1964026_31	eggNOG-mapper	573061.Clocel_3533	tail tape measure protein	NA
UHGV-1964026_31	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1964026_31	COG	COG5280	Phage-related minor tail protein	NA
UHGV-1964026_31	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1964026_32	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1964026_32	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-1964026_32	UniRef90	UniRef90_A0A1C5P786	Phage anti-repressor protein	NA
UHGV-1964026_32	eggNOG-mapper	1230342.CTM_17202	Phage antirepressor protein KilAC domain	NA
UHGV-1964026_32	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-1964026_32	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1964026_32	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-1964026_32	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-1964026_34	UniRef90	UniRef90_A0A3A9HXZ9	CopG family transcriptional regulator	NA
UHGV-1964026_34	eggNOG-mapper	663278.Ethha_2491	NA	NA
UHGV-1964026_34	Pfam	PF12651	Ribbon-helix-helix domain	RHH_3
UHGV-1964026_34	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-1964026_36	PHROG	phrog_706	NA	unknown function
UHGV-1964026_36	UniRef90	UniRef90_A0A175A387	Bacteriophage Gp15 protein	NA
UHGV-1964026_36	eggNOG-mapper	1395513.P343_12620	Bacteriophage Gp15 protein	NA
UHGV-1964026_36	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1964026_36	Structural annotation	PF06854	NA	NA
UHGV-1964026_37	Structural annotation	PF10666	NA	NA
UHGV-1964026_38	PHROG	phrog_820	major tail protein	tail
UHGV-1964026_38	UniRef90	UniRef90_UPI000BFEA11C	capsid protein	NA
UHGV-1964026_38	eggNOG-mapper	1295642.H839_08339	Belongs to the glycosyl hydrolase family 6	NA
UHGV-1964026_38	COG	COG5492	NA	NA
UHGV-1964026_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1964026_39	Structural annotation	PF12691	NA	NA
UHGV-1964026_40	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1964026_40	UniRef90	UniRef90_A0A2Z4QA41	Minor capsid protein	NA
UHGV-1964026_40	eggNOG-mapper	476272.RUMHYD_01780	NA	NA
UHGV-1964026_40	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1964026_40	Structural annotation	PF11114	NA	NA
UHGV-1964026_41	PHROG	phrog_793	head-tail adaptor	connector
UHGV-1964026_41	UniRef90	UniRef90_A0A3R6PPU3	Minor capsid protein	NA
UHGV-1964026_41	eggNOG-mapper	1449343.JQLQ01000002_gene1330	Minor capsid protein	NA
UHGV-1964026_41	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-1964026_41	COG	COG5652	VanZ-like family protein (function unknown)	NA
UHGV-1964026_41	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-1964026_42	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1964026_43	PHROG	phrog_267	major head protein	head and packaging
UHGV-1964026_43	UniRef90	UniRef90_A0A1C6GMA6	S-l_SbsC_C domain-containing protein	NA
UHGV-1964026_43	eggNOG-mapper	718252.FP2_06660	NA	NA
UHGV-1964026_43	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1964026_44	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1964026_44	UniRef90	UniRef90_A0A0N7BTJ7	NA	NA
UHGV-1964026_44	eggNOG-mapper	195103.CPF_0955	NA	NA
UHGV-1964026_44	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-1964026_46	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1964026_46	UniRef90	UniRef90_A0A174ZWV0	Phage minor capsid protein 2	NA
UHGV-1964026_46	eggNOG-mapper	428125.CLOLEP_01802	NA	NA
UHGV-1964026_46	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1964026_46	COG	COG2369	NA	NA
UHGV-1964026_46	Structural annotation	PF06152	NA	NA
UHGV-1964026_47	PHROG	phrog_533	portal protein	head and packaging
UHGV-1964026_47	UniRef90	UniRef90_A0A349GP64	Portal protein	NA
UHGV-1964026_47	eggNOG-mapper	1460640.JCM19046_3520	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1964026_47	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1964026_47	NCBIFam	TIGR01542.1	phage portal protein	NA
UHGV-1964026_47	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1964026_48	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1964026_48	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1964026_48	UniRef90	UniRef90_UPI00041C320F	PBSX family phage terminase large subunit	NA
UHGV-1964026_48	eggNOG-mapper	1120998.AUFC01000030_gene2231	Phage terminase, large subunit, PBSX family	NA
UHGV-1964026_48	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1964026_48	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1964026_48	COG	COG1783	Phage terminase large subunit	NA
UHGV-1964026_48	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1964026	Yes	32,236 bps	54.18%	61.86%	0.9813
UHGV-0137923	No	32,236 bps	54.18%	61.85%	0.9813
UHGV-0392376	No	32,236 bps	54.18%	61.85%	0.9813
UHGV-1757187	No	20,513 bps	54.40%	42.22%	0.9775