vOTU-023204

Overview

vOTU representative UHGV-0198473

No. of genomes 3

Genome length 29,480 bps

Completeness 78.27% (medium-quality)

Host Clostridium paraputrificum

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-023204
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-03062 › vGENUS-18496 › vOTU-023204
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Clostridiales › Clostridiaceae › Clostridium › Clostridium paraputrificum
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0198473
BioSample	NA
Genome length	29,480 bps
CheckV completeness	78.27% (medium-quality)
CheckV contamination	0.00%
CDS count	49
CDS density	91.92%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0198473_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0198473_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0198473_1	UniRef90	UniRef90_UPI0018A03072	recombinase family protein	NA
UHGV-0198473_1	eggNOG-mapper	1408422.JHYF01000007_gene1308	Recombinase	NA
UHGV-0198473_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0198473_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0198473_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0198473_2	PHROG	phrog_87	metallo-protease	other
UHGV-0198473_2	UniRef90	UniRef90_UPI00189CC494	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0198473_2	eggNOG-mapper	929506.CbC4_1185	Zn peptidase	NA
UHGV-0198473_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0198473_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0198473_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0198473_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0198473_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0198473_3	UniRef90	UniRef90_UPI0018992DB4	helix-turn-helix transcriptional regulator	NA
UHGV-0198473_3	eggNOG-mapper	1120998.AUFC01000013_gene2938	PFAM helix-turn-helix domain protein	NA
UHGV-0198473_3	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0198473_3	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0198473_3	Structural annotation	PF01381, NF007257, COG3655	NA	NA
UHGV-0198473_4	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0198473_4	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-0198473_4	UniRef90	UniRef90_UPI0015D48A11	transcriptional regulator	NA
UHGV-0198473_4	eggNOG-mapper	411470.RUMGNA_03230	sequence-specific DNA binding	NA
UHGV-0198473_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0198473_4	Structural annotation	PF01381, NF007257, COG1396	NA	NA
UHGV-0198473_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0198473_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0198473_5	UniRef90	UniRef90_UPI001A9B6B12	helix-turn-helix domain-containing protein	NA
UHGV-0198473_5	eggNOG-mapper	1415775.U729_2578	Helix-turn-helix XRE-family like proteins	NA
UHGV-0198473_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0198473_5	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0198473_5	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-0198473_6	UniRef90	UniRef90_UPI001D5A5574	XRE family transcriptional regulator	NA
UHGV-0198473_6	eggNOG-mapper	1292035.H476_1036	NA	NA
UHGV-0198473_6	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-0198473_8	eggNOG-mapper	1196322.A370_05749	NA	NA
UHGV-0198473_13	PHROG	phrog_3497	NA	unknown function
UHGV-0198473_13	UniRef90	UniRef90_UPI000C0829E3	HNH endonuclease	NA
UHGV-0198473_13	eggNOG-mapper	1443125.Z962_p0035	endonuclease activity	NA
UHGV-0198473_13	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0198473_13	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0198473_13	Structural annotation	COG5126	NA	NA
UHGV-0198473_15	PHROG	phrog_1389	NA	unknown function
UHGV-0198473_15	UniRef90	UniRef90_A0A3P6KVP0	NA	NA
UHGV-0198473_15	eggNOG-mapper	632245.CLP_2637	NA	NA
UHGV-0198473_15	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0198473_18	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0198473_18	UniRef90	UniRef90_I2E8X7	Gp31	NA
UHGV-0198473_18	eggNOG-mapper	1414720.CBYM010000002_gene589	NA	NA
UHGV-0198473_18	Structural annotation	PF21578	NA	NA
UHGV-0198473_20	PHROG	phrog_7445	NA	unknown function
UHGV-0198473_20	UniRef90	UniRef90_UPI0015D4B2B1	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0198473_20	eggNOG-mapper	1395513.P343_08075	NA	NA
UHGV-0198473_20	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0198473_20	Structural annotation	PF14058	NA	NA
UHGV-0198473_21	PHROG	phrog_8470	NA	unknown function
UHGV-0198473_21	UniRef90	UniRef90_UPI000C07D481	PcfJ domain-containing protein	NA
UHGV-0198473_21	eggNOG-mapper	649747.HMPREF0083_05326	PcfJ-like protein	NA
UHGV-0198473_21	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0198473_21	Structural annotation	PF14284	NA	NA
UHGV-0198473_22	PHROG	phrog_15609	NA	unknown function
UHGV-0198473_22	UniRef90	UniRef90_UPI000C07D6AC	NA	NA
UHGV-0198473_22	eggNOG-mapper	632245.CLP_1620	NA	NA
UHGV-0198473_22	Pfam	PF11300	NA	DUF3102
UHGV-0198473_22	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0198473_22	Structural annotation	PF11300, NF038070	NA	NA
UHGV-0198473_24	eggNOG-mapper	1280689.AUJC01000011_gene1503	NA	NA
UHGV-0198473_25	PHROG	phrog_19515	NA	unknown function
UHGV-0198473_25	eggNOG-mapper	318464.IO99_13805	NA	NA
UHGV-0198473_26	eggNOG-mapper	999411.HMPREF1092_00905	NA	NA
UHGV-0198473_27	eggNOG-mapper	1196322.A370_02064	NA	NA
UHGV-0198473_28	Pfam	PF09388	Spo0E like sporulation regulatory protein	SpoOE-like
UHGV-0198473_29	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0198473_29	UniRef90	UniRef90_A0A0D8IFD7	Phage transcriptional activator, RinA family	NA
UHGV-0198473_29	eggNOG-mapper	1415774.U728_493	DNA-templated transcription, initiation	NA
UHGV-0198473_29	COG	COG1595	DNA-directed RNA polymerase specialized sigma subunit, sigma24 family	NA
UHGV-0198473_29	Structural annotation	PF06530, TIGR01636	NA	NA
UHGV-0198473_30	KOfam	K09132	NA	NA
UHGV-0198473_30	UniRef90	UniRef90_UPI000C087FB2	HEPN domain-containing protein	NA
UHGV-0198473_30	eggNOG-mapper	246969.TAM4_654	HEPN domain	NA
UHGV-0198473_30	Pfam	PF05168	HEPN domain	HEPN
UHGV-0198473_30	COG	COG1895	HEPN domain protein, predicted toxin of MNT-HEPN system	NA
UHGV-0198473_31	KOfam	K06223	dam; DNA adenine methylase [EC:2.1.1.72]	NA
UHGV-0198473_31	PHROG	phrog_56	DNA methyltransferase	other
UHGV-0198473_31	UniRef90	UniRef90_UPI001896B28B	DNA adenine methylase	NA
UHGV-0198473_31	eggNOG-mapper	318464.IO99_03725	D12 class N6 adenine-specific DNA methyltransferase	NA
UHGV-0198473_31	PADLOC	MTase_II_00039	Type II methyltransferase	RM
UHGV-0198473_31	Pfam	PF02086	D12 class N6 adenine-specific DNA methyltransferase	MethyltransfD12
UHGV-0198473_31	NCBIFam	TIGR00571.1	Dam family site-specific DNA-(adenine-N6)-methyltransferase	NA
UHGV-0198473_31	COG	COG0338	DNA-adenine methylase	NA
UHGV-0198473_31	Structural annotation	PF02086, MF_00934, TIGR00571, COG0338	NA	NA
UHGV-0198473_33	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0198473_33	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0198473_33	UniRef90	UniRef90_UPI0018973E8C	HNH endonuclease	NA
UHGV-0198473_33	eggNOG-mapper	1415774.U728_1257	HNH nucleases	NA
UHGV-0198473_33	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0198473_33	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0198473_34	PHROG	phrog_5110	terminase small subunit	head and packaging
UHGV-0198473_34	UniRef90	UniRef90_UPI000C06AD39	P27 family phage terminase small subunit	NA
UHGV-0198473_34	eggNOG-mapper	86416.Clopa_0336	NA	NA
UHGV-0198473_34	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0198473_34	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0198473_35	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0198473_35	UniRef90	UniRef90_UPI000C07C8AB	terminase large subunit	NA
UHGV-0198473_35	eggNOG-mapper	86416.Clopa_0337	Phage Terminase	NA
UHGV-0198473_35	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0198473_35	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0198473_35	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0198473_35	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0198473_36	PHROG	phrog_12	portal protein	head and packaging
UHGV-0198473_36	UniRef90	UniRef90_UPI001A9A8447	phage portal protein	NA
UHGV-0198473_36	eggNOG-mapper	1211817.CCAT010000053_gene2130	Phage portal protein	NA
UHGV-0198473_36	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0198473_36	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0198473_36	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0198473_36	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0198473_37	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0198473_37	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0198473_37	UniRef90	UniRef90_UPI000C07928B	Clp protease ClpP	NA
UHGV-0198473_37	eggNOG-mapper	86416.Clopa_0340	Belongs to the peptidase S14 family	NA
UHGV-0198473_37	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0198473_37	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0198473_37	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0198473_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-0198473_38	UniRef90	UniRef90_UPI00189BAA04	phage major capsid protein	NA
UHGV-0198473_38	eggNOG-mapper	1415774.U728_1252	Phage capsid family	NA
UHGV-0198473_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0198473_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0198473_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0198473_38	Structural annotation	PF05065, PF12733, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0198473_39	PHROG	phrog_749	NA	unknown function
UHGV-0198473_39	eggNOG-mapper	1415774.U728_1251	NA	NA
UHGV-0198473_40	PHROG	phrog_19734	NA	unknown function
UHGV-0198473_40	UniRef90	UniRef90_UPI00058D8276	phage head closure protein	NA
UHGV-0198473_40	eggNOG-mapper	86416.Clopa_0343	NA	NA
UHGV-0198473_41	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0198473_41	UniRef90	UniRef90_UPI0018984D6A	HK97 gp10 family phage protein	NA
UHGV-0198473_41	eggNOG-mapper	1280689.AUJC01000011_gene1525	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0198473_41	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0198473_41	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0198473_41	Structural annotation	PF04883, TIGR01725	NA	NA
UHGV-0198473_42	PHROG	phrog_78	tail terminator	connector
UHGV-0198473_42	eggNOG-mapper	1211817.CCAT010000053_gene2136	NA	NA
UHGV-0198473_42	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0198473_43	PHROG	phrog_88	major tail protein	tail
UHGV-0198473_43	UniRef90	UniRef90_UPI00058C0646	tail protein	NA
UHGV-0198473_43	eggNOG-mapper	203119.Cthe_1713	Maj_tail_phi13 phage major tail , phi13 family protein	NA
UHGV-0198473_43	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0198473_43	COG	COG5492	NA	NA
UHGV-0198473_43	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0198473_44	PHROG	phrog_2115	tail protein	tail
UHGV-0198473_44	eggNOG-mapper	203119.Cthe_1710	NA	NA
UHGV-0198473_44	Structural annotation	PF11836	NA	NA
UHGV-0198473_45	PHROG	phrog_10988	NA	unknown function
UHGV-0198473_45	UniRef90	UniRef90_UPI00099A40D6	phage tail assembly chaperone	NA
UHGV-0198473_46	PHROG	phrog_3981	tail length tape measure protein	tail
UHGV-0198473_46	UniRef90	UniRef90_UPI001897835A	phage tail tape measure protein	NA
UHGV-0198473_46	eggNOG-mapper	1280689.AUJC01000011_gene1530	tape measure	NA
UHGV-0198473_46	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0198473_46	Structural annotation	PF20155, TIGR01760, COG5280	NA	NA
UHGV-0198473_47	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0198473_47	UniRef90	UniRef90_UPI0015B3D59E	phage tail family protein	NA
UHGV-0198473_47	eggNOG-mapper	1280689.AUJC01000011_gene1531	phage tail	NA
UHGV-0198473_47	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0198473_47	COG	COG4722	Phage-related protein YomH	NA
UHGV-0198473_47	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0198473_48	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0198473_48	UniRef90	UniRef90_UPI001899A9BD	phage tail protein	NA
UHGV-0198473_48	eggNOG-mapper	1280689.AUJC01000011_gene1532	Prophage endopeptidase tail	NA
UHGV-0198473_48	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0198473_48	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0198473_48	COG	COG4926	Phage-related protein	NA
UHGV-0198473_48	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0198473_49	eggNOG-mapper	1280689.AUJC01000011_gene1533	NA	NA
UHGV-0198473_49	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0198473	Yes	29,480 bps	30.11%	78.27%	0.9549
UHGV-1409075	No	25,855 bps	30.56%	68.58%	0.9639
UHGV-0361117	No	11,553 bps	30.10%	30.51%	0.9467