vOTU-024362

Overview

No. of genomes 5

Genome length 36,361 bps

Completeness 72.15% (medium-quality)

Host Sutterella wadsworthensis A

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-024362
Number of genomes	5
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-00282 › vGENUS-00272 › vOTU-024362
Host taxonomy	Bacteria › Proteobacteria › Gammaproteobacteria › Burkholderiales › Burkholderiaceae › Sutterella › Sutterella wadsworthensis A
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0387265
BioSample	NA
Genome length	36,361 bps
CheckV completeness	72.15% (medium-quality)
CheckV contamination	0.00%
CDS count	63
CDS density	88.52%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0387265_1	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0387265_1	UniRef90	UniRef90_K1JPR0	Phage tail tape measure protein, TP901 family, core region	NA
UHGV-0387265_1	eggNOG-mapper	742823.HMPREF9465_00211	Phage-related minor tail protein	NA
UHGV-0387265_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0387265_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0387265_1	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0387265_1	Structural annotation	TIGR01760	NA	NA
UHGV-0387265_2	PHROG	phrog_46	tail protein	tail
UHGV-0387265_2	UniRef90	UniRef90_UPI00093B8285	tail protein X	NA
UHGV-0387265_2	eggNOG-mapper	742823.HMPREF9465_00210	Tail protein	NA
UHGV-0387265_2	Pfam	PF05489	Phage Tail Protein X	Phage_tail_X
UHGV-0387265_2	COG	COG5004	P2-like prophage tail protein X	NA
UHGV-0387265_2	Structural annotation	PF05489, TIGR02899, COG5004	NA	NA
UHGV-0387265_3	KOfam	K06905	NA	NA
UHGV-0387265_3	PHROG	phrog_52	tail protein	tail
UHGV-0387265_3	UniRef90	UniRef90_A0A3B9Q8K7	Late control D family protein	NA
UHGV-0387265_3	eggNOG-mapper	742823.HMPREF9465_00209	Late control D family protein	NA
UHGV-0387265_3	Pfam	PF05954	Phage tail baseplate hub (GPD)	Phage_GPD
UHGV-0387265_3	COG	COG3500	NA	NA
UHGV-0387265_3	Structural annotation	PF05954, NF033848, COG3500	NA	NA
UHGV-0387265_4	PHROG	phrog_9992	baseplate assembly protein	tail
UHGV-0387265_4	UniRef90	UniRef90_K1K036	Phage baseplate assembly protein V	NA
UHGV-0387265_4	eggNOG-mapper	742823.HMPREF9465_00208	Baseplate assembly protein	NA
UHGV-0387265_4	Pfam	PF18715	Phage spike trimer	Phage_spike
UHGV-0387265_4	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0387265_4	COG	COG4540	Phage P2 baseplate assembly protein gpV	NA
UHGV-0387265_4	Structural annotation	PF04717, PF11280, MF_00075, TIGR01644, COG4540	NA	NA
UHGV-0387265_5	KOfam	K06906	NA	NA
UHGV-0387265_5	PHROG	phrog_76	tail protein	tail
UHGV-0387265_5	UniRef90	UniRef90_UPI001960FEFD	phage tail protein	NA
UHGV-0387265_5	eggNOG-mapper	742823.HMPREF9465_00207	Phage P2 GpU	NA
UHGV-0387265_5	Pfam	PF06995	Phage P2 GpU	Phage_P2_GpU
UHGV-0387265_5	COG	COG3499	NA	NA
UHGV-0387265_5	Structural annotation	PF06995, TIGR01633, COG3499	NA	NA
UHGV-0387265_6	KOfam	K06903	NA	NA
UHGV-0387265_6	PHROG	phrog_43	baseplate wedge subunit	tail
UHGV-0387265_6	UniRef90	UniRef90_K1JPQ2	GPW_gp25 domain-containing protein	NA
UHGV-0387265_6	eggNOG-mapper	742823.HMPREF9465_00206	GPW Gp25 family protein	NA
UHGV-0387265_6	Pfam	PF04965	Baseplate wedge protein gp25	GPW_gp25
UHGV-0387265_6	COG	COG3628	Phage baseplate assembly protein W	NA
UHGV-0387265_6	Structural annotation	PF04965, TIGR03357, COG3628	NA	NA
UHGV-0387265_7	PHROG	phrog_6	baseplate protein	tail
UHGV-0387265_7	UniRef90	UniRef90_K1JKP8	Baseplate_J domain-containing protein	NA
UHGV-0387265_7	eggNOG-mapper	742823.HMPREF9465_00205	Baseplate J-like protein	NA
UHGV-0387265_7	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0387265_7	COG	COG3948	Phage-related baseplate assembly protein	NA
UHGV-0387265_7	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3948	NA	NA
UHGV-0387265_8	PHROG	phrog_48	tail protein	tail
UHGV-0387265_8	UniRef90	UniRef90_K1KKI1	Phage tail protein I	NA
UHGV-0387265_8	eggNOG-mapper	742823.HMPREF9465_00204	Tail protein I	NA
UHGV-0387265_8	Pfam	PF09684	Phage tail protein (Tail_P2_I)	Tail_P2_I
UHGV-0387265_8	NCBIFam	TIGR01634.1	phage tail protein I	NA
UHGV-0387265_8	COG	COG4385	Bacteriophage P2-related tail formation protein	NA
UHGV-0387265_8	Structural annotation	PF09684, TIGR01634, COG4385	NA	NA
UHGV-0387265_9	PHROG	phrog_8443	tail fiber protein	tail
UHGV-0387265_9	eggNOG-mapper	742823.HMPREF9465_00203	tail collar domain protein	NA
UHGV-0387265_9	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0387265_9	COG	COG4675	Phage tail collar domain	NA
UHGV-0387265_9	Structural annotation	PF12571, COG5301	NA	NA
UHGV-0387265_10	PHROG	phrog_15547	NA	unknown function
UHGV-0387265_10	UniRef90	UniRef90_UPI00196180A7	tail fiber protein	NA
UHGV-0387265_10	eggNOG-mapper	742823.HMPREF9465_00202	tail collar domain protein	NA
UHGV-0387265_10	Pfam	PF12571	Phage tail-collar fibre protein	DUF3751
UHGV-0387265_10	COG	COG4675	Phage tail collar domain	NA
UHGV-0387265_10	Structural annotation	PF12571, PF14400, NF012201	NA	NA
UHGV-0387265_11	PHROG	phrog_188	tail fiber assembly protein	tail
UHGV-0387265_11	eggNOG-mapper	742823.HMPREF9465_00201	site-specific DNA-methyltransferase (adenine-specific) activity	NA
UHGV-0387265_11	COG	COG0286	Type I restriction-modification system, DNA methylase subunit	NA
UHGV-0387265_12	PHROG	phrog_1084	NA	unknown function
UHGV-0387265_12	UniRef90	UniRef90_UPI00159BDB4F	BppU family phage baseplate upper protein	NA
UHGV-0387265_12	eggNOG-mapper	742823.HMPREF9465_00200	NA	NA
UHGV-0387265_12	Structural annotation	PF10651, NF032891, COG5456	NA	NA
UHGV-0387265_13	UniRef90	UniRef90_K1KKH4	Collagen alpha-1(XVIII) chain	NA
UHGV-0387265_14	PHROG	phrog_38190	NA	unknown function
UHGV-0387265_14	eggNOG-mapper	742823.HMPREF9465_00198	translation initiation factor activity	NA
UHGV-0387265_14	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0387265_17	UniRef90	UniRef90_K1KKG8	NA	NA
UHGV-0387265_17	eggNOG-mapper	742823.HMPREF9465_00194	NA	NA
UHGV-0387265_18	KOfam	K07270	K07270; glycosyl transferase, family 25	NA
UHGV-0387265_18	PHROG	phrog_2835	glucosyltransferase	moron, auxiliary metabolic gene and host takeover
UHGV-0387265_18	UniRef90	UniRef90_UPI0011CB186D	glycosyltransferase family 25 protein	NA
UHGV-0387265_18	eggNOG-mapper	742823.HMPREF9465_00921	Glycosyltransferase family 25 (LPS biosynthesis protein)	NA
UHGV-0387265_18	Pfam	PF01755	Glycosyltransferase family 25 (LPS biosynthesis protein)	Glyco_transf_25
UHGV-0387265_18	COG	COG3306	Glycosyltransferase involved in LPS biosynthesis, GR25 family	NA
UHGV-0387265_18	Structural annotation	PF01755, MF_01164, NF003948, COG3306	NA	NA
UHGV-0387265_19	eggNOG-mapper	742823.HMPREF9465_00192	NA	NA
UHGV-0387265_20	KOfam	K16617	COL13A; collagen type XIII alpha	NA
UHGV-0387265_20	PHROG	phrog_1980	tail fiber protein	tail
UHGV-0387265_20	UniRef90	UniRef90_K1JPN2	Peptidase S74 domain-containing protein	NA
UHGV-0387265_20	eggNOG-mapper	742823.HMPREF9465_00191	cell adhesion	NA
UHGV-0387265_20	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0387265_20	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-0387265_20	COG	COG2911	Autotransporter translocation and assembly protein TamB	NA
UHGV-0387265_21	PHROG	phrog_199	holin	lysis
UHGV-0387265_21	UniRef90	UniRef90_K1JKN5	Toxin secretion/phage lysis holin	NA
UHGV-0387265_21	eggNOG-mapper	742823.HMPREF9465_00190	Bacteriophage holin family	NA
UHGV-0387265_21	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0387265_21	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0387265_21	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0387265_21	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0387265_22	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0387265_22	PHROG	phrog_435	endolysin	lysis
UHGV-0387265_22	UniRef90	UniRef90_K1KKG1	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0387265_22	eggNOG-mapper	742823.HMPREF9465_00189	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0387265_22	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-0387265_22	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0387265_22	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-0387265_24	KOfam	K14059	int; integrase	NA
UHGV-0387265_24	PHROG	phrog_1	integrase	integration and excision
UHGV-0387265_24	UniRef90	UniRef90_K1K016	Tyr recombinase domain-containing protein	NA
UHGV-0387265_24	eggNOG-mapper	742823.HMPREF9465_00188	Belongs to the 'phage' integrase family	NA
UHGV-0387265_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0387265_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0387265_24	Structural annotation	PF00589, MF_01808, NF007246, COG4974	NA	NA
UHGV-0387265_25	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0387265_25	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0387265_25	UniRef90	UniRef90_K1JWX8	HTH cro/C1-type domain-containing protein	NA
UHGV-0387265_25	eggNOG-mapper	742823.HMPREF9465_00187	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0387265_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0387265_25	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0387265_26	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-0387265_26	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-0387265_26	UniRef90	UniRef90_UPI00056ED384	helix-turn-helix domain-containing protein	NA
UHGV-0387265_26	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0387265_26	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0387265_26	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0387265_27	PHROG	phrog_11233	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0387265_27	UniRef90	UniRef90_A4F0J0	Bacteriophage-related protein	NA
UHGV-0387265_27	eggNOG-mapper	742823.HMPREF9465_00185	DnaD domain protein	NA
UHGV-0387265_27	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0387265_28	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0387265_28	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0387265_28	UniRef90	UniRef90_K1KKF4	AAA domain-containing protein	NA
UHGV-0387265_28	eggNOG-mapper	742823.HMPREF9465_00184	IstB-like ATP binding protein	NA
UHGV-0387265_28	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0387265_28	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0387265_28	Structural annotation	PF01695, MF_01158, NF009043, COG1484	NA	NA
UHGV-0387265_32	KOfam	K14059	int; integrase	NA
UHGV-0387265_32	PHROG	phrog_1	integrase	integration and excision
UHGV-0387265_32	UniRef90	UniRef90_UPI00056EDCAF	site-specific integrase	NA
UHGV-0387265_32	eggNOG-mapper	1207063.P24_09911	Belongs to the 'phage' integrase family	NA
UHGV-0387265_32	Pfam	PF13356	Arm DNA-binding domain	Arm-DNA-bind_3
UHGV-0387265_32	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0387265_32	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0387265_32	Structural annotation	PF00589, PF13356, PF14659, MF_01808, NF007246, COG4974	NA	NA
UHGV-0387265_34	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0387265_34	PHROG	phrog_5817	anti-repressor Ant	transcription regulation
UHGV-0387265_34	UniRef90	UniRef90_K1JKU9	ANT domain-containing protein	NA
UHGV-0387265_34	eggNOG-mapper	742823.HMPREF9465_00255	Phage regulatory protein	NA
UHGV-0387265_34	Pfam	PF08346	AntA/AntB antirepressor	AntA
UHGV-0387265_34	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0387265_34	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0387265_34	Structural annotation	PF03374, PF08346, TIGR02681, COG3645, COG3561	NA	NA
UHGV-0387265_35	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0387265_35	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0387265_35	UniRef90	UniRef90_K1JX68	Single-stranded DNA-binding protein	NA
UHGV-0387265_35	eggNOG-mapper	742823.HMPREF9465_00252	single-stranded DNA binding	NA
UHGV-0387265_35	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0387265_35	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0387265_35	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0387265_35	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0387265_35	Structural annotation	PF00436, MF_00984, NF005406, COG0629	NA	NA
UHGV-0387265_36	PHROG	phrog_2245	nucleoside triphosphate pyrophosphohydrolase	other
UHGV-0387265_36	Structural annotation	PF10400, MF_01019, NF010671, COG0140	NA	NA
UHGV-0387265_45	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0387265_45	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0387265_45	UniRef90	UniRef90_K1K078	Phage RecT family recombinase	NA
UHGV-0387265_45	eggNOG-mapper	742823.HMPREF9465_00243	RecT family	NA
UHGV-0387265_45	Pfam	PF03837	RecT family	RecT
UHGV-0387265_45	NCBIFam	NF007351.0	recombination protein RecT	NA
UHGV-0387265_45	COG	COG3723	Recombinational DNA repair protein RecT	NA
UHGV-0387265_45	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0387265_46	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0387265_46	UniRef90	UniRef90_K1JX53	YqaJ domain-containing protein	NA
UHGV-0387265_46	eggNOG-mapper	742823.HMPREF9465_00242	YqaJ-like viral recombinase domain	NA
UHGV-0387265_46	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0387265_46	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0387265_46	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0387265_46	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0387265_48	KOfam	K07782	sdiA; LuxR family transcriptional regulator, quorum-sensing system regulator SdiA	NA
UHGV-0387265_48	PHROG	phrog_3282	sigma factor	transcription regulation
UHGV-0387265_48	UniRef90	UniRef90_K1JPU3	HTH luxR-type domain-containing protein	NA
UHGV-0387265_48	eggNOG-mapper	526227.Mesil_3486	helix_turn_helix, Lux Regulon	NA
UHGV-0387265_48	Pfam	PF00196	Bacterial regulatory proteins, luxR family	GerE
UHGV-0387265_48	COG	COG2197	DNA-binding response regulator, NarL/FixJ family, contains REC and HTH domains	NA
UHGV-0387265_52	Structural annotation	PF20027	NA	NA
UHGV-0387265_53	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0387265_53	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0387265_53	UniRef90	UniRef90_E7H553	HTH cro/C1-type domain-containing protein	NA
UHGV-0387265_53	eggNOG-mapper	1203554.HMPREF1476_00235	Peptidase S24-like	NA
UHGV-0387265_53	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0387265_53	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0387265_53	COG	COG2932	Phage repressor protein C, contains Cro/C1-type HTH and peptisase s24 domains	NA
UHGV-0387265_53	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-0387265_54	PHROG	phrog_8008	DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0387265_54	UniRef90	UniRef90_UPI000F531EE6	Cro/CI family transcriptional regulator	NA
UHGV-0387265_54	eggNOG-mapper	1203554.HMPREF1476_00236	NA	NA
UHGV-0387265_54	Structural annotation	PF15943, NF007282	NA	NA
UHGV-0387265_55	PHROG	phrog_1032	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0387265_55	UniRef90	UniRef90_UPI0013F65904	helix-turn-helix domain-containing protein	NA
UHGV-0387265_55	eggNOG-mapper	742823.HMPREF9465_00234	Helix-turn-helix domain	NA
UHGV-0387265_55	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-0387265_55	COG	COG0640	DNA-binding transcriptional regulator, ArsR family	NA
UHGV-0387265_55	Structural annotation	PF13730, MF_01909, NF040939, COG5529	NA	NA
UHGV-0387265_56	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0387265_56	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0387265_56	UniRef90	UniRef90_K1K063	IstB_IS21 domain-containing protein	NA
UHGV-0387265_56	eggNOG-mapper	742823.HMPREF9465_00233	PFAM IstB domain protein ATP-binding protein	NA
UHGV-0387265_56	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0387265_56	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0387265_56	Structural annotation	PF01695, MF_01919, NF005931, COG1484	NA	NA
UHGV-0387265_60	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0387265_60	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0387265_60	UniRef90	UniRef90_UPI0013F5B34A	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-0387265_60	eggNOG-mapper	742823.HMPREF9465_00230	Holliday junction resolvase	NA
UHGV-0387265_60	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0387265_60	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0387265_61	Structural annotation	PF06530, NF006930, COG1595	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0387265	Yes	36,361 bps	54.62%	72.15%	0.9642
UHGV-0051619	No	34,738 bps	54.71%	68.91%	0.9668
UHGV-1464267	No	34,738 bps	54.71%	68.91%	0.9668
UHGV-1765712	No	15,563 bps	54.97%	31.17%	0.9678
UHGV-1774875	No	15,563 bps	54.98%	31.17%	0.9674