vOTU-024758

Overview

vOTU representative UHGV-1861956

No. of genomes 4

Genome length 36,990 bps

Completeness 59.65% (medium-quality)

Host UBA9506 sp003506415

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-024758
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vOTU-024758
Host taxonomy	Bacteria › Firmicutes A › Clostridia › UBA1381 › UBA9506 › UBA9506 › UBA9506 sp003506415
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1861956
BioSample	NA
Genome length	36,990 bps
CheckV completeness	59.65% (medium-quality)
CheckV contamination	0.00%
CDS count	40
CDS density	89.12%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1861956_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1861956_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1861956_2	UniRef90	UniRef90_A0A1C6FNL9	HTH cro/C1-type domain-containing protein	NA
UHGV-1861956_2	eggNOG-mapper	1304866.K413DRAFT_0834	PFAM helix-turn-helix domain protein	NA
UHGV-1861956_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1861956_2	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1861956_2	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-1861956_4	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1861956_11	eggNOG-mapper	1235792.C808_00630	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome	NA
UHGV-1861956_11	COG	COG4933	Predicted transcriptional regulator, contains an HTH and PUA-like domains	NA
UHGV-1861956_12	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1861956_12	UniRef90	UniRef90_A0A355JDZ5	HNH domain-containing protein (Fragment)	NA
UHGV-1861956_12	eggNOG-mapper	445972.ANACOL_01826	HNH nucleases	NA
UHGV-1861956_12	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1861956_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1861956_14	eggNOG-mapper	1519439.JPJG01000060_gene1883	NA	NA
UHGV-1861956_14	Structural annotation	PF21578, NF033538	NA	NA
UHGV-1861956_15	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1861956_15	UniRef90	UniRef90_UPI00100A781C	transposase	NA
UHGV-1861956_15	eggNOG-mapper	469618.FVAG_00793	transposase activity	NA
UHGV-1861956_15	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-1861956_17	PHROG	phrog_156	portal protein	head and packaging
UHGV-1861956_17	UniRef90	UniRef90_A0A2K9P4K6	Sigma-70 region 2	NA
UHGV-1861956_17	eggNOG-mapper	1203606.HMPREF1526_02749	NA	NA
UHGV-1861956_17	Structural annotation	PF16510, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1861956_18	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1861956_18	PHROG	phrog_979	terminase large subunit	head and packaging
UHGV-1861956_18	UniRef90	UniRef90_A0A658JVZ8	Terminase-like family protein	NA
UHGV-1861956_18	eggNOG-mapper	1449126.JQKL01000003_gene1699	NA	NA
UHGV-1861956_18	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1861956_18	COG	COG1783	Phage terminase large subunit	NA
UHGV-1861956_18	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-1861956_19	PHROG	phrog_15239	NA	unknown function
UHGV-1861956_21	PHROG	phrog_1357	major head protein	head and packaging
UHGV-1861956_21	UniRef90	UniRef90_UPI001CF8B373	N4-gp56 family major capsid protein	NA
UHGV-1861956_21	eggNOG-mapper	935837.JAEK01000054_gene1469	NA	NA
UHGV-1861956_21	Pfam	PF13252	NA	DUF4043
UHGV-1861956_21	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-1861956_21	Structural annotation	PF13252, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1861956_22	PHROG	phrog_511	internal virion protein	head and packaging
UHGV-1861956_22	eggNOG-mapper	411483.FAEPRAA2165_01037	NA	NA
UHGV-1861956_22	Structural annotation	PF11134, NF038015, TIGR03721, COG3823	NA	NA
UHGV-1861956_24	PHROG	phrog_5869	NA	unknown function
UHGV-1861956_24	UniRef90	UniRef90_A0A7X8KUE7	Type II toxin-antitoxin system RelE/ParE family toxin	NA
UHGV-1861956_24	eggNOG-mapper	665956.HMPREF1032_03542	RelE toxin of RelE / RelB toxin-antitoxin system	NA
UHGV-1861956_24	AcrCatalog	cluster_46799	NA	NA
UHGV-1861956_24	Pfam	PF06296	RelE toxin of RelE / RelB toxin-antitoxin system	RelE
UHGV-1861956_24	COG	COG4737	NA	NA
UHGV-1861956_24	Structural annotation	PF06296, TIGR02683, COG4737	NA	NA
UHGV-1861956_25	KOfam	K07726	K07726; putative transcriptional regulator	NA
UHGV-1861956_25	PHROG	phrog_2104	NA	unknown function
UHGV-1861956_25	UniRef90	UniRef90_A0A7C7D354	Helix-turn-helix domain-containing protein	NA
UHGV-1861956_25	eggNOG-mapper	1009370.ALO_20052	Helix-turn-helix	NA
UHGV-1861956_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1861956_25	COG	COG2944	DNA-binding transcriptional regulator YiaG, XRE-type HTH domain	NA
UHGV-1861956_26	PHROG	phrog_22978	NA	unknown function
UHGV-1861956_26	eggNOG-mapper	1226322.HMPREF1545_00787	NA	NA
UHGV-1861956_26	Pfam	PF18798	Large polyvalent protein-associated domain 3	LPD3
UHGV-1861956_26	Pfam	PF18838	Large polyvalent protein associated domain 23	LPD23
UHGV-1861956_26	Pfam	PF20573	NA	DUF6782
UHGV-1861956_26	Pfam	PF18812	phage-Barnase-EndoU-ColicinE5/D-RelE like nuclease3	PBECR3
UHGV-1861956_27	PHROG	phrog_12105	NA	unknown function
UHGV-1861956_31	PHROG	phrog_15594	NA	unknown function
UHGV-1861956_31	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-1861956_31	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1861956_33	KOfam	K01448	amiABC; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1861956_33	PHROG	phrog_435	endolysin	lysis
UHGV-1861956_33	UniRef90	UniRef90_A0A3D2AA77	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1861956_33	eggNOG-mapper	1410668.JNKC01000001_gene1675	N-Acetylmuramoyl-L-alanine amidase	NA
UHGV-1861956_33	Pfam	PF01520	N-acetylmuramoyl-L-alanine amidase	Amidase_3
UHGV-1861956_33	Pfam	PF00395	S-layer homology domain	SLH
UHGV-1861956_33	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1861956_33	Structural annotation	PF01520, MF_00562, TIGR02883, COG0860	NA	NA
UHGV-1861956_34	eggNOG-mapper	33035.JPJF01000090_gene94	NA	NA
UHGV-1861956_35	PHROG	phrog_1129	holin	lysis
UHGV-1861956_35	UniRef90	UniRef90_UPI001C124A7D	phage holin family protein	NA
UHGV-1861956_35	eggNOG-mapper	665956.HMPREF1032_01916	Phage holin family Hol44, in holin superfamily V	NA
UHGV-1861956_35	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-1861956_35	Structural annotation	PF16079	NA	NA
UHGV-1861956_37	eggNOG-mapper	1195236.CTER_1175	competence protein COMEC	NA
UHGV-1861956_37	COG	COG2333	DNA uptake channel protein ComEC C-terminal domain, metallo-beta-lactamase superfamily	NA
UHGV-1861956_38	KOfam	K14059	int; integrase	NA
UHGV-1861956_38	PHROG	phrog_1	integrase	integration and excision
UHGV-1861956_38	UniRef90	UniRef90_A0A3E3DVE5	Site-specific integrase	NA
UHGV-1861956_38	eggNOG-mapper	1235799.C818_03513	Phage integrase, N-terminal SAM-like domain	NA
UHGV-1861956_38	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1861956_38	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1861956_38	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1861956_38	Structural annotation	PF00589, PF14659, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-1861956_40	PHROG	phrog_87	metallo-protease	other
UHGV-1861956_40	UniRef90	UniRef90_A0A7C7D013	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1861956_40	eggNOG-mapper	1507.HMPREF0262_00423	IrrE N-terminal-like domain	NA
UHGV-1861956_40	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1861956_40	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1861956	Yes	36,990 bps	47.17%	59.65%	0.9602
UHGV-2100129	No	34,612 bps	47.21%	59.17%	0.9695
UHGV-1358416	No	36,030 bps	46.97%	53.70%	0.9542
UHGV-0203835	No	36,030 bps	46.97%	53.62%	0.9620