vOTU-025125

Overview

vOTU representative UHGV-1420904

No. of genomes 3

Genome length 22,989 bps

Completeness 56.99% (medium-quality)

Host CAG-41 sp900066215

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-025125
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-00837 › vGENUS-20011 › vOTU-025125
Host taxonomy	Bacteria › Firmicutes A › Clostridia › UBA1381 › UBA1381 › CAG-41 › CAG-41 sp900066215
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1420904
BioSample	SAMEA3541520
Genome length	22,989 bps
CheckV completeness	56.99% (medium-quality)
CheckV contamination	0.00%
CDS count	34
CDS density	93.81%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1420904_1	PHROG	phrog_17321	NA	unknown function
UHGV-1420904_1	UniRef90	UniRef90_A0A3B8S463	Phage tail tape measure protein (Fragment)	NA
UHGV-1420904_1	eggNOG-mapper	536232.CLM_2046	phage tail tape measure protein	NA
UHGV-1420904_1	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1420904_1	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1420904_1	COG	COG1340	NA	NA
UHGV-1420904_1	Structural annotation	PF10145, PF11570, TIGR01760, TIGR02977	NA	NA
UHGV-1420904_3	PHROG	phrog_88	major tail protein	tail
UHGV-1420904_3	UniRef90	UniRef90_A0A1C6E366	Phage major tail protein, phi13 family	NA
UHGV-1420904_3	eggNOG-mapper	1348908.KI518589_gene2530	NA	NA
UHGV-1420904_3	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1420904_3	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1420904_4	PHROG	phrog_78	tail terminator	connector
UHGV-1420904_4	Structural annotation	PF05657	NA	NA
UHGV-1420904_5	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1420904_5	UniRef90	UniRef90_A0A7X5KS36	HK97 gp10 family phage protein	NA
UHGV-1420904_5	eggNOG-mapper	562981.HMPREF0428_01816	NA	NA
UHGV-1420904_5	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1420904_5	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-1420904_5	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-1420904_6	eggNOG-mapper	931276.Cspa_c26940	NA	NA
UHGV-1420904_6	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1420904_6	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1420904_7	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1420904_7	UniRef90	UniRef90_UPI00195DE3AA	phage head-tail connector protein	NA
UHGV-1420904_7	eggNOG-mapper	97138.C820_00227	Phage gp6-like head-tail connector protein	NA
UHGV-1420904_7	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-1420904_7	Structural annotation	PF05135	NA	NA
UHGV-1420904_8	PHROG	phrog_10	major head protein	head and packaging
UHGV-1420904_8	UniRef90	UniRef90_A0A1C6E4H6	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1420904_8	eggNOG-mapper	1123250.KB908414_gene2105	Phage capsid family	NA
UHGV-1420904_8	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1420904_8	Pfam	PF18316	S-layer protein SbsC C-terminal domain	S-l_SbsC_C
UHGV-1420904_8	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1420904_8	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1420904_8	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1420904_9	PHROG	phrog_172	head scaffolding protein	head and packaging
UHGV-1420904_9	UniRef90	UniRef90_A0A416CVN6	NA	NA
UHGV-1420904_9	Pfam	PF14265	NA	DUF4355
UHGV-1420904_9	Structural annotation	PF14265	NA	NA
UHGV-1420904_11	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1420904_11	UniRef90	UniRef90_A0A416CW54	Phage_Mu_F domain-containing protein	NA
UHGV-1420904_11	eggNOG-mapper	1209989.TepiRe1_1146	Phage Mu protein F like protein	NA
UHGV-1420904_11	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1420904_11	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1420904_11	COG	COG2369	NA	NA
UHGV-1420904_11	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1420904_12	PHROG	phrog_64	portal protein	head and packaging
UHGV-1420904_12	UniRef90	UniRef90_A0A416CW21	Phage portal protein	NA
UHGV-1420904_12	eggNOG-mapper	1461246.X2KPH1_9VIRU	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1420904_12	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1420904_12	NCBIFam	TIGR01538.1	phage portal protein	NA
UHGV-1420904_12	Structural annotation	PF05133, TIGR01538, COG3567	NA	NA
UHGV-1420904_13	PHROG	phrog_64	portal protein	head and packaging
UHGV-1420904_13	UniRef90	UniRef90_A0A5B6P265	Phage portal protein (Fragment)	NA
UHGV-1420904_13	eggNOG-mapper	1449343.JQLQ01000002_gene1530	Phage portal protein, SPP1 Gp6-like	NA
UHGV-1420904_13	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1420904_14	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1420904_14	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1420904_14	UniRef90	UniRef90_A0A416CVQ3	PBSX family phage terminase large subunit	NA
UHGV-1420904_14	eggNOG-mapper	1256908.HMPREF0373_00486	Phage terminase, large subunit, PBSX family	NA
UHGV-1420904_14	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1420904_14	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1420904_14	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1420904_14	COG	COG1783	Phage terminase large subunit	NA
UHGV-1420904_14	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1420904_15	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1420904_15	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1420904_15	UniRef90	UniRef90_A0A348Z931	Terminase small subunit	NA
UHGV-1420904_15	eggNOG-mapper	1449343.JQLQ01000002_gene1532	Terminase small subunit	NA
UHGV-1420904_15	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1420904_15	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1420904_15	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1420904_17	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1420904_17	UniRef90	UniRef90_A0A3D3FGT2	Sigma70_r4 domain-containing protein	NA
UHGV-1420904_17	eggNOG-mapper	1120978.KB894081_gene99	NA	NA
UHGV-1420904_17	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1420904_17	Structural annotation	PF07374, MF_00674, NF008895, COG1191	NA	NA
UHGV-1420904_19	PHROG	phrog_421	NA	unknown function
UHGV-1420904_19	UniRef90	UniRef90_A0A3R7BR33	NA	NA
UHGV-1420904_19	eggNOG-mapper	1235800.C819_00518	NA	NA
UHGV-1420904_20	PHROG	phrog_8684	NA	unknown function
UHGV-1420904_20	UniRef90	UniRef90_A0A1C6BLK1	YopX protein	NA
UHGV-1420904_20	eggNOG-mapper	411473.RUMCAL_00283	YopX protein	NA
UHGV-1420904_20	Pfam	PF09643	YopX protein	YopX
UHGV-1420904_20	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-1420904_20	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-1420904_22	Structural annotation	PF08141, MF_00667, TIGR02861, COG0231	NA	NA
UHGV-1420904_23	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1420904_23	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1420904_23	UniRef90	UniRef90_A0A1C6CSJ7	Holliday junction resolvase	NA
UHGV-1420904_23	eggNOG-mapper	478749.BRYFOR_07588	endodeoxyribonuclease RusA	NA
UHGV-1420904_23	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-1420904_23	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1420904_23	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-1420904_24	KOfam	K07505	repA; regulatory protein RepA	NA
UHGV-1420904_24	PHROG	phrog_2597	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-1420904_24	UniRef90	UniRef90_A0A1C6CSE0	Regulatory protein repA	NA
UHGV-1420904_24	eggNOG-mapper	1232449.BAHV02000008_gene621	Primase C terminal 2 (PriCT-2)	NA
UHGV-1420904_24	Pfam	PF08707	Primase C terminal 2 (PriCT-2)	PriCT_2
UHGV-1420904_24	Pfam	PF13481	AAA domain	AAA_25
UHGV-1420904_24	COG	COG3598	RecA-family ATPase	NA
UHGV-1420904_24	Structural annotation	PF13481, PF16793, PF08220, MF_00350, MF_00700, NF006606, NF001641, COG3598, COG3285	NA	NA
UHGV-1420904_25	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-1420904_25	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1420904_25	UniRef90	UniRef90_A0A1C6CSB9	Excinuclease ABC subunit B	NA
UHGV-1420904_25	eggNOG-mapper	1235798.C817_03499	helicase superfamily c-terminal domain	NA
UHGV-1420904_25	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-1420904_25	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-1420904_25	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1420904_25	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-1420904_25	Structural annotation	PF04851, PF16203, MF_01489, NF008521, COG1061	NA	NA
UHGV-1420904_26	PHROG	phrog_2698	NA	unknown function
UHGV-1420904_26	UniRef90	UniRef90_UPI001106D01D	NA	NA
UHGV-1420904_26	eggNOG-mapper	394503.Ccel_3308	NA	NA
UHGV-1420904_26	Structural annotation	PF05037	NA	NA
UHGV-1420904_27	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-1420904_27	UniRef90	UniRef90_A0A2N0UXR5	Phage nucleotide-binding protein	NA
UHGV-1420904_27	eggNOG-mapper	645991.Sgly_0321	AAA domain	NA
UHGV-1420904_27	Pfam	PF13479	AAA domain	AAA_24
UHGV-1420904_27	Structural annotation	PF13479, MF_00268, TIGR01618, COG0468	NA	NA
UHGV-1420904_28	KOfam	K03546	sbcC, rad50; DNA repair protein SbcC/Rad50	NA
UHGV-1420904_28	PHROG	phrog_1499	NA	unknown function
UHGV-1420904_28	UniRef90	UniRef90_A0A1C6CT75	Chromosome segregation protein	NA
UHGV-1420904_28	eggNOG-mapper	645991.Sgly_0320	domain protein	NA
UHGV-1420904_28	Pfam	PF13476	AAA domain	AAA_23
UHGV-1420904_28	COG	COG1196	Chromosome segregation ATPase Smc	NA
UHGV-1420904_28	Structural annotation	PF11398, MF_00365, TIGR00634, COG0497	NA	NA
UHGV-1420904_29	PHROG	phrog_28990	NA	unknown function
UHGV-1420904_33	UniRef90	UniRef90_R6MGJ6	HTH_17 domain-containing protein	NA
UHGV-1420904_33	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1420904_33	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1420904	Yes	22,989 bps	40.27%	56.99%	0.9806
UHGV-1655874	No	11,212 bps	38.88%	27.57%	0.9785
UHGV-1707299	No	10,848 bps	38.79%	26.70%	0.9750