vOTU-025173

Overview

vOTU representative UHGV-1977401

No. of genomes 4

Genome length 33,299 bps

Completeness 88.56% (medium-quality)

Host Clostridium sp001916075

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-025173
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00026 › vSUBFAM-01032 › vOTU-025173
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Clostridiales › Clostridiaceae › Clostridium › Clostridium sp001916075
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1977401
BioSample	SAMEA2580241
Genome length	33,299 bps
CheckV completeness	88.56% (medium-quality)
CheckV contamination	0.00%
CDS count	41
CDS density	93.37%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1977401_3	eggNOG-mapper	1499683.CCFF01000017_gene2561	exo-alpha-(2->6)-sialidase activity	NA
UHGV-1977401_3	COG	COG4409	Neuraminidase (sialidase) NanH, contains C-terminal autotransporter domain	NA
UHGV-1977401_3	Structural annotation	PF08005, PF19972	NA	NA
UHGV-1977401_5	UniRef90	UniRef90_R6FSL3	Peptidase S74 domain-containing protein	NA
UHGV-1977401_5	eggNOG-mapper	1294142.CINTURNW_0309	tail collar domain protein	NA
UHGV-1977401_5	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1977401_5	COG	COG4675	Phage tail collar domain	NA
UHGV-1977401_5	Structural annotation	PF02002, TIGR04176	NA	NA
UHGV-1977401_6	PHROG	phrog_13589	NA	unknown function
UHGV-1977401_6	eggNOG-mapper	632245.CLP_1288	cellulose 1,4-beta-cellobiosidase activity	NA
UHGV-1977401_6	COG	COG5301	Phage-related tail fiber protein	NA
UHGV-1977401_7	PHROG	phrog_16573	NA	unknown function
UHGV-1977401_7	eggNOG-mapper	1321778.HMPREF1982_03560	NA	NA
UHGV-1977401_7	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-1977401_7	COG	COG2755	Lysophospholipase L1 or related esterase. Includes spore coat protein LipC/YcsK	NA
UHGV-1977401_8	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-1977401_8	UniRef90	UniRef90_A0A0E1KW44	Prophage_tail domain-containing protein	NA
UHGV-1977401_8	eggNOG-mapper	1567011.A0A0A7RUI9_9VIRU	N-acetylmuramoyl-L-alanine amidase activity	NA
UHGV-1977401_8	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-1977401_8	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-1977401_8	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-1977401_8	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-1977401_9	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-1977401_9	UniRef90	UniRef90_UPI00100A9E42	phage tail family protein	NA
UHGV-1977401_9	eggNOG-mapper	1567011.A0A0A7RWN1_9VIRU	Phage tail protein	NA
UHGV-1977401_9	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-1977401_9	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-1977401_10	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-1977401_10	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-1977401_10	UniRef90	UniRef90_A0A6B4YP68	Phage tail tape measure protein	NA
UHGV-1977401_10	eggNOG-mapper	632245.CLP_2687	phage tail tape measure protein	NA
UHGV-1977401_10	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-1977401_10	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-1977401_10	COG	COG5283	Phage-related tail protein	NA
UHGV-1977401_10	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-1977401_11	eggNOG-mapper	536233.CLO_1369	NA	NA
UHGV-1977401_11	Structural annotation	PF11836	NA	NA
UHGV-1977401_12	PHROG	phrog_88	major tail protein	tail
UHGV-1977401_12	UniRef90	UniRef90_UPI001898E323	phage tail protein	NA
UHGV-1977401_12	eggNOG-mapper	1111121.HMPREF1247_0016	phage major tail protein, phi13 family	NA
UHGV-1977401_12	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-1977401_12	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-1977401_13	PHROG	phrog_78	tail terminator	connector
UHGV-1977401_13	eggNOG-mapper	536233.CLO_1367	NA	NA
UHGV-1977401_13	Structural annotation	PF05657	NA	NA
UHGV-1977401_14	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1977401_14	UniRef90	UniRef90_C4IGZ7	Phage protein, HK97 gp10 family	NA
UHGV-1977401_14	eggNOG-mapper	632245.CLP_2691	NA	NA
UHGV-1977401_14	Structural annotation	TIGR01725	NA	NA
UHGV-1977401_15	UniRef90	UniRef90_A0A1I7G2Z2	Head-tail adaptor	NA
UHGV-1977401_15	eggNOG-mapper	632245.CLP_2692	Phage head-tail joining protein	NA
UHGV-1977401_15	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-1977401_15	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-1977401_16	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-1977401_16	UniRef90	UniRef90_UPI00164B66EB	head-tail connector protein	NA
UHGV-1977401_16	eggNOG-mapper	1414720.CBYM010000002_gene570	Phage gp6-like head-tail connector protein	NA
UHGV-1977401_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-1977401_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-1977401_17	PHROG	phrog_10	major head protein	head and packaging
UHGV-1977401_17	UniRef90	UniRef90_A0A1I7G333	Phage major capsid protein, HK97 family	NA
UHGV-1977401_17	eggNOG-mapper	632245.CLP_2917	Phage major capsid protein, HK97 family	NA
UHGV-1977401_17	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1977401_17	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1977401_17	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1977401_17	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1977401_18	KOfam	K06904	NA	NA
UHGV-1977401_18	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-1977401_18	UniRef90	UniRef90_UPI0004B60E4D	HK97 family phage prohead protease	NA
UHGV-1977401_18	eggNOG-mapper	1414720.CBYM010000002_gene573	Phage prohead protease, HK97 family	NA
UHGV-1977401_18	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-1977401_18	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-1977401_18	COG	COG3740	Phage head maturation protease	NA
UHGV-1977401_18	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-1977401_19	PHROG	phrog_12	portal protein	head and packaging
UHGV-1977401_19	UniRef90	UniRef90_C4IH02	Phage portal protein, HK97 family	NA
UHGV-1977401_19	eggNOG-mapper	632245.CLP_2696	Phage portal protein, HK97 family	NA
UHGV-1977401_19	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-1977401_19	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-1977401_19	COG	COG4695	Phage portal protein BeeE	NA
UHGV-1977401_19	Structural annotation	PF04860, MF_04120, TIGR01537, COG4695	NA	NA
UHGV-1977401_20	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-1977401_20	UniRef90	UniRef90_UPI00164A3B8B	terminase large subunit	NA
UHGV-1977401_20	eggNOG-mapper	1414720.CBYM010000001_gene696	Terminase	NA
UHGV-1977401_20	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-1977401_20	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-1977401_20	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-1977401_20	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-1977401_21	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-1977401_21	UniRef90	UniRef90_UPI001056C6E6	P27 family phage terminase small subunit	NA
UHGV-1977401_21	eggNOG-mapper	1414720.CBYM010000001_gene695	phage terminase small subunit	NA
UHGV-1977401_21	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-1977401_21	COG	COG3747	Phage terminase, small subunit	NA
UHGV-1977401_21	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-1977401_22	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1977401_22	PHROG	phrog_144	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1977401_22	UniRef90	UniRef90_A0A2C1KUI9	HNHc domain-containing protein	NA
UHGV-1977401_22	eggNOG-mapper	1414720.CBYM010000002_gene577	HNH nucleases	NA
UHGV-1977401_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1977401_23	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-1977401_23	UniRef90	UniRef90_UPI0012EE5C69	Xaa-His dipeptidase	NA
UHGV-1977401_23	eggNOG-mapper	1414720.CBYM010000001_gene693	NA	NA
UHGV-1977401_23	Structural annotation	PF07141	NA	NA
UHGV-1977401_24	KOfam	K04763	xerD; integrase/recombinase XerD	NA
UHGV-1977401_24	PHROG	phrog_216	integrase	integration and excision
UHGV-1977401_24	UniRef90	UniRef90_A0A1C6DLA6	Site-specific tyrosine recombinase XerC	NA
UHGV-1977401_24	eggNOG-mapper	1414720.CBYM010000001_gene692	Phage integrase family	NA
UHGV-1977401_24	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1977401_24	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1977401_24	Structural annotation	PF00589, MF_01807, NF040815, COG4974	NA	NA
UHGV-1977401_25	PHROG	phrog_9628	NA	unknown function
UHGV-1977401_25	UniRef90	UniRef90_A0A8I0DLJ3	DNA-binding response regulator	NA
UHGV-1977401_25	eggNOG-mapper	1414720.CBYM010000001_gene690	NA	NA
UHGV-1977401_25	Structural annotation	PF06056, COG2771	NA	NA
UHGV-1977401_26	KOfam	K09777	remA; extracellular matrix regulatory protein A	NA
UHGV-1977401_26	UniRef90	UniRef90_A0A8I0DNB1	NA	NA
UHGV-1977401_26	eggNOG-mapper	1414720.CBYM010000001_gene689	NA	NA
UHGV-1977401_26	Pfam	PF04025	Extracellular matrix regulatory protein A-like	RemA-like
UHGV-1977401_26	NCBIFam	NF003315.0	hypothetical protein	NA
UHGV-1977401_26	COG	COG2052	NA	NA
UHGV-1977401_26	Structural annotation	PF04025, MF_01503, NF003315, COG2052	NA	NA
UHGV-1977401_27	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-1977401_27	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-1977401_27	UniRef90	UniRef90_R6FSJ4	Exonuclease RNase T and DNA polymerase III	NA
UHGV-1977401_27	eggNOG-mapper	641107.CDLVIII_1931	Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity	NA
UHGV-1977401_27	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-1977401_27	Pfam	PF00929	Exonuclease	RNase_T
UHGV-1977401_27	COG	COG2176	DNA polymerase III, alpha subunit (gram-positive type)	NA
UHGV-1977401_27	Structural annotation	PF00929, MF_00157, NF006316, COG0847	NA	NA
UHGV-1977401_28	KOfam	K06899	ndpA; nucleoid-associated protein	NA
UHGV-1977401_28	PHROG	phrog_1974	NA	unknown function
UHGV-1977401_28	UniRef90	UniRef90_A0A8I0DPH4	Nucleoid-associated protein	NA
UHGV-1977401_28	eggNOG-mapper	1414720.CBYM010000002_gene581	37-kD nucleoid-associated bacterial protein	NA
UHGV-1977401_28	Pfam	PF04245	37-kD nucleoid-associated bacterial protein	NA37
UHGV-1977401_28	COG	COG3081	dsDNA-binding nucleoid-associated protein YejK/NdpA	NA
UHGV-1977401_28	Structural annotation	PF04245, MF_00730, NF001557, COG3081	NA	NA
UHGV-1977401_31	Structural annotation	PF13719	NA	NA
UHGV-1977401_32	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1977401_32	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1977401_32	UniRef90	UniRef90_A0A8I0A8M5	ATP-binding protein	NA
UHGV-1977401_32	eggNOG-mapper	536232.CLM_2562	Bacterial dnaA protein	NA
UHGV-1977401_32	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-1977401_32	NCBIFam	NF005992.0	hypothetical protein	NA
UHGV-1977401_32	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1977401_32	Structural annotation	PF01695, MF_01919, NF005992, COG1484	NA	NA
UHGV-1977401_33	PHROG	phrog_5968	replisome organizer	DNA, RNA and nucleotide metabolism
UHGV-1977401_33	UniRef90	UniRef90_A0A8I0ADW4	Phage replisome organizer N-terminal domain-containing protein	NA
UHGV-1977401_33	eggNOG-mapper	1294142.CINTURNW_2802	Phage replisome organizer	NA
UHGV-1977401_33	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-1977401_33	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-1977401_33	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1977401_33	Structural annotation	PF09681, TIGR01714, COG3935	NA	NA
UHGV-1977401_37	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-1977401_37	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-1977401_37	UniRef90	UniRef90_UPI0018A9A0C6	phage antirepressor	NA
UHGV-1977401_37	eggNOG-mapper	1211817.CCAT010000007_gene1061	Phage antirepressor protein	NA
UHGV-1977401_37	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-1977401_37	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-1977401_37	COG	COG3617	Prophage antirepressor	NA
UHGV-1977401_37	Structural annotation	PF03374, PF02498, TIGR02681, COG3645	NA	NA
UHGV-1977401_38	UniRef90	UniRef90_A0A6B4RLC1	XRE family transcriptional regulator	NA
UHGV-1977401_38	eggNOG-mapper	1292035.H476_1036	NA	NA
UHGV-1977401_38	Structural annotation	PF05339, NF041951, COG1396	NA	NA
UHGV-1977401_39	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1977401_39	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-1977401_39	UniRef90	UniRef90_UPI001A9B6B12	helix-turn-helix domain-containing protein	NA
UHGV-1977401_39	eggNOG-mapper	632245.CLP_2722	Helix-turn-helix XRE-family like proteins	NA
UHGV-1977401_39	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1977401_39	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1977401_39	Structural annotation	PF12844, MF_00535, NF007257, COG1396	NA	NA
UHGV-1977401_40	PHROG	phrog_87	metallo-protease	other
UHGV-1977401_40	UniRef90	UniRef90_UPI001F15A929	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1977401_40	eggNOG-mapper	1567012.A0A0A7RTF0_9VIRU	Pfam:Peptidase_M78	NA
UHGV-1977401_40	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-1977401_40	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1977401_41	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-1977401_41	PHROG	phrog_95	integrase	integration and excision
UHGV-1977401_41	UniRef90	UniRef90_A0A8I0A712	Recombinase family protein	NA
UHGV-1977401_41	eggNOG-mapper	1151292.QEW_0309	Resolvase, N terminal domain	NA
UHGV-1977401_41	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-1977401_41	Pfam	PF07508	Recombinase	Recombinase
UHGV-1977401_41	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-1977401_41	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-1977401_41	Structural annotation	PF00239, NF041201, COG1961	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1977401	Yes	33,299 bps	29.22%	88.56%	0.9735
UHGV-1427895	No	21,955 bps	30.51%	57.07%	0.9761
UHGV-0182926	No	21,935 bps	30.54%	57.02%	0.9760
UHGV-1634346	No	16,256 bps	29.04%	43.27%	0.9802