vOTU-025668

Overview

vOTU representative UHGV-1522062

No. of genomes 8

Genome length 32,521 bps

Completeness 77.40% (medium-quality)

Host Gemmiger sp900539695

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-025668
Number of genomes	8
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-04658 › vGENUS-08442 › vOTU-025668
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Gemmiger › Gemmiger sp900539695
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1522062
BioSample	SAMEA2338769
Genome length	32,521 bps
CheckV completeness	77.40% (medium-quality)
CheckV contamination	0.00%
CDS count	59
CDS density	95.53%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1522062_1	eggNOG-mapper	1280668.ATVT01000017_gene1594	NA	NA
UHGV-1522062_1	Structural annotation	PF02556, MF_00821, NF004392, COG1952	NA	NA
UHGV-1522062_2	KOfam	K15773	hipB; HTH-type transcriptional regulator / antitoxin HipB	NA
UHGV-1522062_2	PHROG	phrog_1373	transcriptional regulator	transcription regulation
UHGV-1522062_2	UniRef90	UniRef90_UPI001CBC9967	helix-turn-helix domain-containing protein	NA
UHGV-1522062_2	eggNOG-mapper	748224.HMPREF9436_03379	sequence-specific DNA binding	NA
UHGV-1522062_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1522062_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1522062_3	Structural annotation	PF05973, TIGR02683, COG4683	NA	NA
UHGV-1522062_4	PHROG	phrog_87	metallo-protease	other
UHGV-1522062_4	UniRef90	UniRef90_UPI001C3AA0FC	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-1522062_4	eggNOG-mapper	663278.Ethha_2376	NA	NA
UHGV-1522062_4	Structural annotation	PF06114, COG2856	NA	NA
UHGV-1522062_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1522062_5	PHROG	phrog_2967	transcriptional regulator	transcription regulation
UHGV-1522062_5	UniRef90	UniRef90_A0A412UNH6	XRE family transcriptional regulator	NA
UHGV-1522062_5	eggNOG-mapper	1141106.CAIB01000114_gene881	Cro/C1-type HTH DNA-binding domain	NA
UHGV-1522062_5	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1522062_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1522062_5	Structural annotation	PF01381, MF_00535, NF041951, COG3655	NA	NA
UHGV-1522062_6	KOfam	K23779	sutR; XRE family transcriptional regulator, regulator of sulfur utilization	NA
UHGV-1522062_6	PHROG	phrog_6499	transcriptional regulator	transcription regulation
UHGV-1522062_6	UniRef90	UniRef90_A0A6N2UL50	Helix-turn-helix	NA
UHGV-1522062_6	eggNOG-mapper	1504823.CCMM01000008_gene1079	sequence-specific DNA binding	NA
UHGV-1522062_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1522062_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1522062_6	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1522062_9	PHROG	phrog_31564	NA	unknown function
UHGV-1522062_11	Structural annotation	PF21596	NA	NA
UHGV-1522062_12	UniRef90	UniRef90_H1CAR0	HTH cro/C1-type domain-containing protein	NA
UHGV-1522062_12	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1522062_13	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1522062_13	UniRef90	UniRef90_UPI00189BA758	DNA cytosine methyltransferase	NA
UHGV-1522062_13	eggNOG-mapper	397290.C810_01487	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1522062_13	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1522062_13	Structural annotation	PF00145, MF_01872, TIGR00675, COG0270	NA	NA
UHGV-1522062_14	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1522062_14	UniRef90	UniRef90_A0A6L5Y0Q6	Siphovirus Gp157 family protein	NA
UHGV-1522062_14	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-1522062_14	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1522062_14	Structural annotation	PF05565	NA	NA
UHGV-1522062_15	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1522062_15	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-1522062_15	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-1522062_15	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-1522062_16	Structural annotation	PF18300	NA	NA
UHGV-1522062_17	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1522062_17	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1522062_17	eggNOG-mapper	1507.HMPREF0262_00432	NA	NA
UHGV-1522062_17	Structural annotation	PF05772	NA	NA
UHGV-1522062_18	PHROG	phrog_7566	NA	unknown function
UHGV-1522062_18	UniRef90	UniRef90_UPI001570B64C	phosphoenolpyruvate carboxykinase	NA
UHGV-1522062_18	eggNOG-mapper	1507.HMPREF0262_00433	NA	NA
UHGV-1522062_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1522062_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1522062_19	UniRef90	UniRef90_A0A6N8H4T4	Single-stranded DNA-binding protein	NA
UHGV-1522062_19	eggNOG-mapper	411471.SUBVAR_04646	Single-stranded DNA-binding protein	NA
UHGV-1522062_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1522062_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1522062_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1522062_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1522062_19	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-1522062_20	PHROG	phrog_19658	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1522062_20	UniRef90	UniRef90_A0A2D9CL53	Helix-turn-helix domain-containing protein	NA
UHGV-1522062_20	eggNOG-mapper	1203606.HMPREF1526_01323	Helix-turn-helix domain	NA
UHGV-1522062_20	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-1522062_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1522062_20	Structural annotation	PF13730, MF_01909, NF041413, COG3355	NA	NA
UHGV-1522062_21	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-1522062_21	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1522062_21	UniRef90	UniRef90_UPI000C7A0A0E	ATP-binding protein	NA
UHGV-1522062_21	eggNOG-mapper	428125.CLOLEP_01820	NA	NA
UHGV-1522062_21	COG	COG1484	DNA replication protein DnaC	NA
UHGV-1522062_21	Structural annotation	PF01695, MF_01158, NF005378, COG1484	NA	NA
UHGV-1522062_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-1522062_22	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1522062_22	UniRef90	UniRef90_A0A1M6MZ11	Holliday junction resolvase RusA (Prophage-encoded endonuclease)	NA
UHGV-1522062_22	eggNOG-mapper	1449126.JQKL01000003_gene1702	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1522062_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1522062_22	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1522062_26	PHROG	phrog_1233	NA	unknown function
UHGV-1522062_26	eggNOG-mapper	1232443.BAIA02000078_gene33	NA	NA
UHGV-1522062_27	Pfam	PF05225	helix-turn-helix, Psq domain	HTH_psq
UHGV-1522062_28	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1522062_28	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1522062_28	UniRef90	UniRef90_A0A3D3FC70	PBSX family phage terminase large subunit	NA
UHGV-1522062_28	eggNOG-mapper	742723.HMPREF9477_00911	Phage terminase large subunit	NA
UHGV-1522062_28	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-1522062_28	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1522062_28	COG	COG1783	Phage terminase large subunit	NA
UHGV-1522062_28	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1522062_29	PHROG	phrog_533	portal protein	head and packaging
UHGV-1522062_29	UniRef90	UniRef90_A0A173Y8E3	Phage portal protein, putative, A118 family	NA
UHGV-1522062_29	eggNOG-mapper	411490.ANACAC_00782	NA	NA
UHGV-1522062_29	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1522062_30	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1522062_30	UniRef90	UniRef90_A0A1C6H425	Phage minor capsid protein 2	NA
UHGV-1522062_30	eggNOG-mapper	645991.Sgly_0338	NA	NA
UHGV-1522062_30	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1522062_30	Pfam	PF15644	Papain fold toxin 1, glutamine deamidase	Gln_amidase
UHGV-1522062_30	COG	COG2369	NA	NA
UHGV-1522062_30	Structural annotation	PF06152, PF15542	NA	NA
UHGV-1522062_32	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1522062_32	UniRef90	UniRef90_R6NCU4	Putative scaffolding protein	NA
UHGV-1522062_32	eggNOG-mapper	663278.Ethha_0093	NA	NA
UHGV-1522062_32	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1522062_33	eggNOG-mapper	33035.JPJF01000030_gene2294	NA	NA
UHGV-1522062_33	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1522062_34	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1522062_35	eggNOG-mapper	411471.SUBVAR_06991	NA	NA
UHGV-1522062_35	Pfam	PF20536	NA	DUF6751
UHGV-1522062_35	Structural annotation	PF20536, COG1853	NA	NA
UHGV-1522062_36	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1522062_36	UniRef90	UniRef90_UPI001958E7C1	minor capsid protein	NA
UHGV-1522062_36	eggNOG-mapper	665956.HMPREF1032_03062	Minor capsid protein	NA
UHGV-1522062_36	Structural annotation	PF11114	NA	NA
UHGV-1522062_37	PHROG	phrog_3266	tail completion	connector
UHGV-1522062_37	eggNOG-mapper	665956.HMPREF1032_02946	NA	NA
UHGV-1522062_37	Structural annotation	PF12691	NA	NA
UHGV-1522062_38	PHROG	phrog_3099	NA	unknown function
UHGV-1522062_38	eggNOG-mapper	411471.SUBVAR_06936	NA	NA
UHGV-1522062_38	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1522062_39	PHROG	phrog_11299	NA	unknown function
UHGV-1522062_39	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-1522062_39	Structural annotation	PF10666	NA	NA
UHGV-1522062_40	PHROG	phrog_706	NA	unknown function
UHGV-1522062_40	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-1522062_40	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-1522062_40	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1522062_40	Structural annotation	PF06854	NA	NA
UHGV-1522062_41	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1522062_41	eggNOG-mapper	411471.SUBVAR_06934	tape measure	NA
UHGV-1522062_41	COG	COG5412	Phage-related protein	NA
UHGV-1522062_42	PHROG	phrog_1194	NA	unknown function
UHGV-1522062_42	eggNOG-mapper	1120746.CCNL01000014_gene2106	NA	NA
UHGV-1522062_42	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1522062_43	PHROG	phrog_13879	NA	unknown function
UHGV-1522062_43	eggNOG-mapper	1120746.CCNL01000014_gene2107	NA	NA
UHGV-1522062_43	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-1522062_44	PHROG	phrog_18725	NA	unknown function
UHGV-1522062_44	eggNOG-mapper	1120746.CCNL01000014_gene2212	NA	NA
UHGV-1522062_49	NCBIFam	NF040910.1	CD1375 family protein	NA
UHGV-1522062_49	Structural annotation	NF040910	NA	NA
UHGV-1522062_51	PHROG	phrog_15594	NA	unknown function
UHGV-1522062_51	eggNOG-mapper	1118055.CAGU01000013_gene763	NA	NA
UHGV-1522062_51	Structural annotation	PF16640, TIGR04488	NA	NA
UHGV-1522062_52	PHROG	phrog_31538	NA	unknown function
UHGV-1522062_53	PHROG	phrog_13589	NA	unknown function
UHGV-1522062_53	eggNOG-mapper	428125.CLOLEP_01434	NA	NA
UHGV-1522062_54	eggNOG-mapper	742733.HMPREF9469_05009	NA	NA
UHGV-1522062_55	eggNOG-mapper	1334046.AYTB01000013_gene457	ATPase involved in DNA repair	NA
UHGV-1522062_55	COG	COG0419	DNA repair exonuclease SbcCD ATPase subunit	NA
UHGV-1522062_56	Structural annotation	PF20328, NF033679, COG4935	NA	NA
UHGV-1522062_57	PHROG	phrog_38190	NA	unknown function
UHGV-1522062_57	eggNOG-mapper	665956.HMPREF1032_02936	NA	NA
UHGV-1522062_58	KOfam	K19304	mepM; murein DD-endopeptidase [EC:3.4.24.-]	NA
UHGV-1522062_58	PHROG	phrog_6700	endolysin	lysis
UHGV-1522062_58	UniRef90	UniRef90_A0A6N8H6M3	M23 family metallopeptidase	NA
UHGV-1522062_58	eggNOG-mapper	314225.ELI_12330	COG0739 Membrane proteins related to metalloendopeptidases	NA
UHGV-1522062_58	Pfam	PF01551	Peptidase family M23	Peptidase_M23
UHGV-1522062_58	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-1522062_59	eggNOG-mapper	411471.SUBVAR_05146	toxin secretion phage lysis holin	NA
UHGV-1522062_59	COG	COG4824	Phage-related holin (Lysis protein)	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1522062	Yes	32,521 bps	56.87%	77.40%	0.9760
UHGV-1531844	No	32,390 bps	56.92%	77.07%	0.9795
UHGV-0089491	No	41,525 bps	56.95%	60.66%	0.9747
UHGV-1997437	No	38,190 bps	57.06%	56.78%	0.9712
UHGV-0054253	No	23,165 bps	57.12%	55.05%	0.9710
UHGV-1521736	No	21,031 bps	57.09%	50.61%	0.9683
UHGV-1757693	No	20,408 bps	56.97%	48.05%	0.9799
UHGV-1798148	No	13,526 bps	56.48%	34.25%	0.9751