vOTU-028752

Overview

vOTU representative UHGV-0201260

No. of genomes 2

Genome length 33,150 bps

Completeness 85.40% (medium-quality)

Host Gemmiger sp004555405

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-028752
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-02875 › vOTU-028752
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Ruminococcaceae › Gemmiger › Gemmiger sp004555405
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0201260
BioSample	SAMN09781749
Genome length	33,150 bps
CheckV completeness	85.40% (medium-quality)
CheckV contamination	0.00%
CDS count	41
CDS density	91.25%
tRNA count	2
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0201260_2	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0201260_2	PHROG	phrog_95	integrase	integration and excision
UHGV-0201260_2	UniRef90	UniRef90_UPI001D07FD01	recombinase family protein	NA
UHGV-0201260_2	eggNOG-mapper	665956.HMPREF1032_01888	NA	NA
UHGV-0201260_2	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0201260_2	Pfam	PF07508	Recombinase	Recombinase
UHGV-0201260_2	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0201260_2	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0201260_2	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0201260_3	KOfam	K07448	mrr; restriction system protein	NA
UHGV-0201260_3	PHROG	phrog_19856	NA	unknown function
UHGV-0201260_3	eggNOG-mapper	397287.C807_03320	Restriction endonuclease	NA
UHGV-0201260_3	PADLOC	ZorD1_00005	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-0201260_3	Pfam	PF04471	Restriction endonuclease	Mrr_cat
UHGV-0201260_3	COG	COG1787	Endonuclease, HJR/Mrr/RecB family	NA
UHGV-0201260_4	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-0201260_4	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-0201260_4	UniRef90	UniRef90_A0A3A6CTP8	XRE family transcriptional regulator	NA
UHGV-0201260_4	eggNOG-mapper	411483.FAEPRAA2165_03041	NA	NA
UHGV-0201260_4	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0201260_4	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-0201260_4	NCBIFam	TIGR00498.1	transcriptional repressor LexA	NA
UHGV-0201260_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0201260_4	Structural annotation	PF00717, PF12844, MF_00015, TIGR00498, TIGR03070, COG1974, COG1476	NA	NA
UHGV-0201260_8	PHROG	phrog_1733	NA	unknown function
UHGV-0201260_8	UniRef90	UniRef90_UPI001967A828	cell envelope integrity protein TolA	NA
UHGV-0201260_8	eggNOG-mapper	665956.HMPREF1032_03597	DNA binding	NA
UHGV-0201260_8	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0201260_8	Structural annotation	PF03677	NA	NA
UHGV-0201260_10	PHROG	phrog_21613	NA	unknown function
UHGV-0201260_10	eggNOG-mapper	1300143.CCAV010000006_gene4343	NA	NA
UHGV-0201260_11	PHROG	phrog_1227	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0201260_11	UniRef90	UniRef90_A0A7V6VUR0	NA	NA
UHGV-0201260_11	eggNOG-mapper	189425.PGRAT_19040	NA	NA
UHGV-0201260_11	Pfam	PF12684	NA	DUF3799
UHGV-0201260_11	COG	COG1074	3'-5' helicase subunit RecB of the DNA repair enzyme RecBCD (exonuclease V)	NA
UHGV-0201260_11	Structural annotation	PF12684, TIGR01896, COG4343	NA	NA
UHGV-0201260_12	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0201260_12	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0201260_12	UniRef90	UniRef90_UPI0018759918	single-stranded DNA-binding protein	NA
UHGV-0201260_12	eggNOG-mapper	748224.HMPREF9436_03359	Plays an important role in DNA replication, recombination and repair. Binds to ssDNA and to an array of partner proteins to recruit them to their sites of action during DNA metabolism	NA
UHGV-0201260_12	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0201260_12	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0201260_12	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0201260_12	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0201260_12	Structural annotation	PF00436, MF_00984, NF005579, COG0629	NA	NA
UHGV-0201260_13	KOfam	K02316	dnaG; DNA primase [EC:2.7.7.101]	NA
UHGV-0201260_13	PHROG	phrog_11992	NA	unknown function
UHGV-0201260_13	UniRef90	UniRef90_UPI001898AABD	CHC2 zinc finger domain-containing protein	NA
UHGV-0201260_13	eggNOG-mapper	1203606.HMPREF1526_01036	NA	NA
UHGV-0201260_13	PADLOC	drt-cluster192	DRT	DRT
UHGV-0201260_13	Pfam	PF01807	CHC2 zinc finger	zf-CHC2
UHGV-0201260_13	COG	COG0358	DNA primase (bacterial type)	NA
UHGV-0201260_14	PHROG	phrog_8841	DNA primase/helicase	DNA, RNA and nucleotide metabolism
UHGV-0201260_14	UniRef90	UniRef90_UPI000C77A760	NA	NA
UHGV-0201260_14	eggNOG-mapper	742738.HMPREF9460_02495	NA	NA
UHGV-0201260_14	Pfam	PF06048	NA	DUF927
UHGV-0201260_14	Pfam	PF18662	Cch helix turn helix domain	HTH_56
UHGV-0201260_14	COG	COG5519	NA	NA
UHGV-0201260_14	Structural annotation	PF06048, PF18662, MF_00016, NF011296, COG5519	NA	NA
UHGV-0201260_15	KOfam	K17677	IRC3; ATP-dependent helicase IRC3 [EC:5.6.2.-]	NA
UHGV-0201260_15	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0201260_15	UniRef90	UniRef90_UPI001C63D655	DEAD/DEAH box helicase	NA
UHGV-0201260_15	eggNOG-mapper	742738.HMPREF9460_02499	helicase superfamily c-terminal domain	NA
UHGV-0201260_15	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0201260_15	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0201260_15	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0201260_15	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0201260_15	Structural annotation	PF04851, PF16203, MF_01489, TIGR04095, COG1061	NA	NA
UHGV-0201260_16	PHROG	phrog_824	NA	unknown function
UHGV-0201260_16	UniRef90	UniRef90_R7GUQ9	VRR-NUC domain-containing protein	NA
UHGV-0201260_16	eggNOG-mapper	742738.HMPREF9460_02501	VRR_NUC	NA
UHGV-0201260_16	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0201260_16	Structural annotation	PF08774	NA	NA
UHGV-0201260_18	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0201260_18	UniRef90	UniRef90_A0A2V2FTX8	Sigma70_r4 domain-containing protein	NA
UHGV-0201260_18	eggNOG-mapper	411471.SUBVAR_05843	NA	NA
UHGV-0201260_18	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-0201260_19	PHROG	phrog_2412	NA	unknown function
UHGV-0201260_19	eggNOG-mapper	742738.HMPREF9460_02504	NA	NA
UHGV-0201260_20	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0201260_20	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-0201260_20	UniRef90	UniRef90_UPI0019684892	phage terminase large subunit	NA
UHGV-0201260_20	eggNOG-mapper	1449050.JNLE01000003_gene3895	phage terminase, large subunit, PBSX family	NA
UHGV-0201260_20	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0201260_20	COG	COG1783	Phage terminase large subunit	NA
UHGV-0201260_20	Structural annotation	PF04466, PF20441, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0201260_21	PHROG	phrog_533	portal protein	head and packaging
UHGV-0201260_21	UniRef90	UniRef90_A0A7G9WF85	Phage portal protein	NA
UHGV-0201260_21	eggNOG-mapper	718252.FP2_06700	NA	NA
UHGV-0201260_21	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-0201260_22	PHROG	phrog_581	minor head protein	head and packaging
UHGV-0201260_22	UniRef90	UniRef90_A0A1C5NZK4	Phage minor capsid protein 2	NA
UHGV-0201260_22	eggNOG-mapper	718252.FP2_06690	NA	NA
UHGV-0201260_22	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-0201260_22	COG	COG2369	NA	NA
UHGV-0201260_22	Structural annotation	PF06152	NA	NA
UHGV-0201260_24	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0201260_24	UniRef90	UniRef90_UPI0015E07D35	phage scaffolding protein	NA
UHGV-0201260_24	eggNOG-mapper	748224.HMPREF9436_03336	Phage minor structural protein GP20	NA
UHGV-0201260_24	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0201260_25	PHROG	phrog_267	major head protein	head and packaging
UHGV-0201260_25	UniRef90	UniRef90_A0A4P8IA69	Phage capsid and scaffold	NA
UHGV-0201260_25	eggNOG-mapper	748224.HMPREF9436_03335	NA	NA
UHGV-0201260_25	Structural annotation	PF11651, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0201260_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0201260_27	Pfam	PF20536	NA	DUF6751
UHGV-0201260_27	Structural annotation	PF20536, TIGR01563, COG5614	NA	NA
UHGV-0201260_28	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0201260_28	UniRef90	UniRef90_UPI001958E7C1	minor capsid protein	NA
UHGV-0201260_28	eggNOG-mapper	1292035.H476_1011	Minor capsid protein	NA
UHGV-0201260_28	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-0201260_28	Structural annotation	PF11114	NA	NA
UHGV-0201260_29	PHROG	phrog_3266	tail completion	connector
UHGV-0201260_29	eggNOG-mapper	663278.Ethha_0098	NA	NA
UHGV-0201260_29	Structural annotation	PF12691	NA	NA
UHGV-0201260_30	PHROG	phrog_3099	NA	unknown function
UHGV-0201260_30	eggNOG-mapper	665956.HMPREF1032_03060	NA	NA
UHGV-0201260_30	Structural annotation	PF10772, TIGR02126, COG3499	NA	NA
UHGV-0201260_31	PHROG	phrog_11299	NA	unknown function
UHGV-0201260_31	eggNOG-mapper	665956.HMPREF1032_03059	NA	NA
UHGV-0201260_31	Structural annotation	PF10666	NA	NA
UHGV-0201260_32	PHROG	phrog_706	NA	unknown function
UHGV-0201260_32	UniRef90	UniRef90_UPI0013141117	Gp15 family bacteriophage protein	NA
UHGV-0201260_32	eggNOG-mapper	665956.HMPREF1032_03058	Bacteriophage Gp15 protein	NA
UHGV-0201260_32	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0201260_32	Structural annotation	PF06854	NA	NA
UHGV-0201260_33	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0201260_33	UniRef90	UniRef90_A0A810PX76	Phage tail tape measure protein	NA
UHGV-0201260_33	eggNOG-mapper	665956.HMPREF1032_03057	tape measure	NA
UHGV-0201260_33	COG	COG1511	NA	NA
UHGV-0201260_34	PHROG	phrog_1194	NA	unknown function
UHGV-0201260_34	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-0201260_34	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0201260_35	PHROG	phrog_13879	NA	unknown function
UHGV-0201260_35	eggNOG-mapper	693746.OBV_18210	NA	NA
UHGV-0201260_35	Structural annotation	PF14594, PF03256, NF033848, COG4379, COG5156	NA	NA
UHGV-0201260_36	PHROG	phrog_18725	NA	unknown function
UHGV-0201260_36	eggNOG-mapper	693746.OBV_18220	NA	NA
UHGV-0201260_40	Structural annotation	PF12245	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0201260	Yes	33,150 bps	54.55%	85.40%	0.9789
UHGV-0174350	No	10,678 bps	55.85%	30.06%	0.9797