vOTU-029361

Overview

vOTU representative UHGV-0209484

No. of genomes 2

Genome length 39,149 bps

Completeness 59.02% (medium-quality)

Host Streptococcus pneumoniae

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-029361
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vOTU-029361
Host taxonomy	Bacteria › Firmicutes › Bacilli › Lactobacillales › Streptococcaceae › Streptococcus › Streptococcus pneumoniae
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0209484
BioSample	SAMN10407349
Genome length	39,149 bps
CheckV completeness	59.02% (medium-quality)
CheckV contamination	0.00%
CDS count	64
CDS density	90.95%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0209484_7	KOfam	K02342	dnaQ; DNA polymerase III subunit epsilon [EC:2.7.7.7]	NA
UHGV-0209484_7	PHROG	phrog_192	DNA polymerase exonuclease subunit	DNA, RNA and nucleotide metabolism
UHGV-0209484_7	UniRef90	UniRef90_UPI001897CA3A	exonuclease	NA
UHGV-0209484_7	eggNOG-mapper	1437608.BBIA_1844	Exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0209484_7	PADLOC	cd06127	CAS-I,CAS-II,CAS-III,CAS-IV,CAS-V,CAS-VI; associated	CRISPR-CAS
UHGV-0209484_7	Pfam	PF00929	Exonuclease	RNase_T
UHGV-0209484_7	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0209484_7	NCBIFam	TIGR00573.1	exonuclease, DNA polymerase III, epsilon subunit family	NA
UHGV-0209484_7	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0209484_7	Structural annotation	PF00929, PF00533, MF_00157, NF005289, COG0847, COG5275	NA	NA
UHGV-0209484_8	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0209484_8	PHROG	phrog_95	integrase	integration and excision
UHGV-0209484_8	UniRef90	UniRef90_UPI00068AC759	recombinase family protein	NA
UHGV-0209484_8	eggNOG-mapper	1235835.C814_00825	Resolvase, N terminal domain	NA
UHGV-0209484_8	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0209484_8	Pfam	PF07508	Recombinase	Recombinase
UHGV-0209484_8	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0209484_8	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0209484_8	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0209484_9	eggNOG-mapper	445972.ANACOL_01884	NA	NA
UHGV-0209484_11	Structural annotation	PF18573, NF033147	NA	NA
UHGV-0209484_13	Pfam	PF07374	NA	DUF1492
UHGV-0209484_14	eggNOG-mapper	1007096.BAGW01000017_gene815	NA	NA
UHGV-0209484_16	KOfam	K07273	acm; lysozyme	NA
UHGV-0209484_16	PHROG	phrog_291	endolysin	lysis
UHGV-0209484_16	UniRef90	UniRef90_A0A318XM26	GH25 family lysozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0209484_16	eggNOG-mapper	641112.ACOK01000108_gene1814	hydrolase, family 25	NA
UHGV-0209484_16	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0209484_16	COG	COG3757	Lyzozyme M1 (1,4-beta-N-acetylmuramidase), GH25 family	NA
UHGV-0209484_16	Structural annotation	PF01183, COG3757	NA	NA
UHGV-0209484_17	PHROG	phrog_4105	NA	unknown function
UHGV-0209484_17	eggNOG-mapper	397288.C806_00115	NA	NA
UHGV-0209484_18	PHROG	phrog_799	DNA methyltransferase	other
UHGV-0209484_18	UniRef90	UniRef90_A0A3S3N5G9	NAD(P)-dependent oxidoreductase	NA
UHGV-0209484_18	eggNOG-mapper	1231377.C426_1976	DNA restriction-modification system	NA
UHGV-0209484_18	COG	COG0827	Adenine-specific DNA N6-methylase	NA
UHGV-0209484_18	Structural annotation	PF19587, MF_01872, NF011489, COG0286	NA	NA
UHGV-0209484_21	PHROG	phrog_9534	head protein	head and packaging
UHGV-0209484_22	PHROG	phrog_538	minor tail protein	tail
UHGV-0209484_22	UniRef90	UniRef90_A0A1T4LS73	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0209484_22	eggNOG-mapper	1321782.HMPREF1986_02278	NA	NA
UHGV-0209484_22	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0209484_22	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0209484_23	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0209484_23	UniRef90	UniRef90_A0A3N1XTA7	Tail protein	NA
UHGV-0209484_23	eggNOG-mapper	755731.Clo1100_3575	Phage tail protein	NA
UHGV-0209484_23	COG	COG4722	Phage-related protein YomH	NA
UHGV-0209484_23	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0209484_24	PHROG	phrog_13339	tail length tape measure protein	tail
UHGV-0209484_24	eggNOG-mapper	411490.ANACAC_00710	Phage tail tape measure protein, TP901 family	NA
UHGV-0209484_24	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0209484_24	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0209484_24	COG	COG5283	Phage-related tail protein	NA
UHGV-0209484_24	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0209484_27	PHROG	phrog_88	major tail protein	tail
UHGV-0209484_27	UniRef90	UniRef90_R5IDR6	Phage major tail protein phi13 family	NA
UHGV-0209484_27	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0209484_27	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0209484_27	COG	COG5492	NA	NA
UHGV-0209484_27	Structural annotation	PF06488, TIGR01603, COG3498	NA	NA
UHGV-0209484_28	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0209484_28	eggNOG-mapper	1203606.HMPREF1526_00974	NA	NA
UHGV-0209484_28	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0209484_28	Structural annotation	TIGR01725	NA	NA
UHGV-0209484_29	eggNOG-mapper	1203606.HMPREF1526_00975	NA	NA
UHGV-0209484_29	Structural annotation	PF05657	NA	NA
UHGV-0209484_33	PHROG	phrog_10	major head protein	head and packaging
UHGV-0209484_33	UniRef90	UniRef90_UPI00067EA767	phage major capsid protein	NA
UHGV-0209484_33	eggNOG-mapper	1007096.BAGW01000033_gene1602	Phage capsid family	NA
UHGV-0209484_33	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0209484_33	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0209484_33	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0209484_33	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0209484_34	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0209484_34	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0209484_34	UniRef90	UniRef90_UPI000F64290E	Clp protease ClpP	NA
UHGV-0209484_34	eggNOG-mapper	1235792.C808_03064	Clp protease	NA
UHGV-0209484_34	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0209484_34	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0209484_34	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0209484_35	PHROG	phrog_12	portal protein	head and packaging
UHGV-0209484_35	UniRef90	UniRef90_UPI000F640FA5	phage portal protein	NA
UHGV-0209484_35	eggNOG-mapper	693746.OBV_20020	Phage portal protein	NA
UHGV-0209484_35	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0209484_35	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0209484_35	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0209484_35	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0209484_37	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0209484_37	UniRef90	UniRef90_A0A8J6MA49	Terminase large subunit	NA
UHGV-0209484_37	eggNOG-mapper	693746.OBV_20000	Phage terminase-like protein large subunit	NA
UHGV-0209484_37	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0209484_37	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0209484_37	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0209484_37	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0209484_38	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0209484_38	UniRef90	UniRef90_UPI0013EF20CD	P27 family phage terminase small subunit	NA
UHGV-0209484_38	eggNOG-mapper	1501230.ET33_21205	Phage terminase, small subunit	NA
UHGV-0209484_38	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0209484_38	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0209484_38	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0209484_41	PHROG	phrog_15863	NA	unknown function
UHGV-0209484_41	UniRef90	UniRef90_A0A1Y3R3M0	J domain-containing protein	NA
UHGV-0209484_41	eggNOG-mapper	693746.OBV_01780	DnaJ molecular chaperone homology domain	NA
UHGV-0209484_41	COG	COG2214	Curved DNA-binding protein CbpA, contains a DnaJ-like domain	NA
UHGV-0209484_45	eggNOG-mapper	1304880.JAGB01000002_gene2225	NA	NA
UHGV-0209484_46	PHROG	phrog_824	NA	unknown function
UHGV-0209484_46	UniRef90	UniRef90_A0A1C6I8N5	VRR-NUC domain	NA
UHGV-0209484_46	eggNOG-mapper	767434.Fraau_0982	VRR-NUC domain	NA
UHGV-0209484_46	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0209484_46	Structural annotation	PF08774	NA	NA
UHGV-0209484_47	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0209484_47	eggNOG-mapper	1519439.JPJG01000060_gene1883	NA	NA
UHGV-0209484_47	Structural annotation	PF21578, NF033538	NA	NA
UHGV-0209484_49	Structural annotation	PF07073, COG4568	NA	NA
UHGV-0209484_51	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-0209484_51	PHROG	phrog_116	DNA methyltransferase	other
UHGV-0209484_51	UniRef90	UniRef90_A0A3D4QY48	DNA (cytosine-5-)-methyltransferase (Fragment)	NA
UHGV-0209484_51	eggNOG-mapper	588581.Cpap_0162	Belongs to the class I-like SAM-binding methyltransferase superfamily. C5-methyltransferase family	NA
UHGV-0209484_51	PADLOC	oMTase_00004	orphan methyltransferase	RM
UHGV-0209484_51	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-0209484_51	COG	COG0270	DNA-cytosine methylase	NA
UHGV-0209484_55	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0209484_55	PHROG	phrog_6218	ParB-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0209484_55	UniRef90	UniRef90_A0A1Y4WCX6	ParB domain-containing protein	NA
UHGV-0209484_55	eggNOG-mapper	718252.FP2_00920	ParB-like nuclease domain	NA
UHGV-0209484_55	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0209484_55	NCBIFam	TIGR00180.1	ParB/RepB/Spo0J family partition protein	NA
UHGV-0209484_55	COG	COG0710	3-dehydroquinate dehydratase	NA
UHGV-0209484_55	Structural annotation	PF02195, PF18579, MF_02015, TIGR00180, COG1475	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0209484	Yes	39,149 bps	56.96%	59.02%	0.9733
UHGV-0183209	No	37,340 bps	57.01%	56.29%	0.9730