vOTU-029863

Overview

vOTU representative UHGV-0204581

No. of genomes 2

Genome length 35,819 bps

Completeness 62.77% (medium-quality)

Host Lachnospira

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-029863
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00007 › vSUBFAM-00026 › vOTU-029863
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Lachnospira
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0204581
BioSample	NA
Genome length	35,819 bps
CheckV completeness	62.77% (medium-quality)
CheckV contamination	0.00%
CDS count	42
CDS density	89.80%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0204581_1	KOfam	K07699	spo0A; two-component system, response regulator, stage 0 sporulation protein A	NA
UHGV-0204581_1	UniRef90	UniRef90_A0A8D9UIQ5	Sporulation initiation factor	NA
UHGV-0204581_1	eggNOG-mapper	1410617.JHXH01000004_gene1309	Sporulation initiation factor Spo0A C terminal	NA
UHGV-0204581_1	Pfam	PF08769	Sporulation initiation factor Spo0A C terminal	Spo0A_C
UHGV-0204581_1	COG	COG0745	DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain	NA
UHGV-0204581_1	Structural annotation	PF08769, TIGR02875	NA	NA
UHGV-0204581_2	KOfam	K01449	cwlJ, sleB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0204581_2	PHROG	phrog_14642	endolysin	lysis
UHGV-0204581_2	UniRef90	UniRef90_A0A8D9PGU7	Cell Wall Hydrolase	NA
UHGV-0204581_2	eggNOG-mapper	742733.HMPREF9469_00034	Cell Wall Hydrolase	NA
UHGV-0204581_2	Pfam	PF07486	Cell Wall Hydrolase	Hydrolase_2
UHGV-0204581_2	COG	COG3773	Cell wall hydrolase CwlJ, involved in spore germination	NA
UHGV-0204581_2	Structural annotation	PF07486, TIGR02869, COG3773	NA	NA
UHGV-0204581_3	PHROG	phrog_463	anti-repressor	transcription regulation
UHGV-0204581_3	UniRef90	UniRef90_A0A8D9PGL6	P22_AR protein	NA
UHGV-0204581_3	eggNOG-mapper	596329.HMPREF0631_1352	BRO family, N-terminal domain protein	NA
UHGV-0204581_3	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0204581_3	Pfam	PF10552	ORF6C domain	ORF6C
UHGV-0204581_3	COG	COG3617	Prophage antirepressor	NA
UHGV-0204581_3	Structural annotation	PF10552, PF02498, TIGR02681, COG3617	NA	NA
UHGV-0204581_6	KOfam	K18830	pezA; HTH-type transcriptional regulator / antitoxin PezA	NA
UHGV-0204581_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0204581_6	UniRef90	UniRef90_R7BIH5	DNA-binding helix-turn-helix protein	NA
UHGV-0204581_6	eggNOG-mapper	445972.ANACOL_03315	NA	NA
UHGV-0204581_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0204581_6	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0204581_6	Structural annotation	PF01381, MF_00535, NF007257, COG1476	NA	NA
UHGV-0204581_7	Structural annotation	PF13108	NA	NA
UHGV-0204581_8	eggNOG-mapper	1234679.BN424_1825	NA	NA
UHGV-0204581_8	Structural annotation	PF03843, MF_01959, TIGR00752, COG3065	NA	NA
UHGV-0204581_9	KOfam	K07273	acm; lysozyme	NA
UHGV-0204581_9	PHROG	phrog_291	endolysin	lysis
UHGV-0204581_9	UniRef90	UniRef90_A0A8D9UIP9	Lysozyme	NA
UHGV-0204581_9	eggNOG-mapper	411470.RUMGNA_00451	COG COG3757 Lyzozyme M1 (1,4-beta-N-acetylmuramidase)	NA
UHGV-0204581_9	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-0204581_9	COG	COG3023	N-acetyl-anhydromuramyl-L-alanine amidase AmpD	NA
UHGV-0204581_9	Structural annotation	PF01183, NF007404, COG3757	NA	NA
UHGV-0204581_10	KOfam	K03733	xerC; integrase/recombinase XerC	NA
UHGV-0204581_10	PHROG	phrog_1	integrase	integration and excision
UHGV-0204581_10	UniRef90	UniRef90_A0A0G9LAR0	Integrase	NA
UHGV-0204581_10	eggNOG-mapper	518637.EUBIFOR_01343	Belongs to the 'phage' integrase family	NA
UHGV-0204581_10	Pfam	PF13495	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_4
UHGV-0204581_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0204581_10	COG	COG4974	Site-specific recombinase XerD	NA
UHGV-0204581_10	Structural annotation	PF00589, PF02899, MF_01807, TIGR02224, COG4973	NA	NA
UHGV-0204581_12	PHROG	phrog_2566	NA	unknown function
UHGV-0204581_13	PHROG	phrog_6616	tail protein	tail
UHGV-0204581_13	UniRef90	UniRef90_A0A8D9PGP3	Minor structural protein	NA
UHGV-0204581_13	eggNOG-mapper	1280692.AUJL01000027_gene2144	Phage minor structural protein	NA
UHGV-0204581_13	COG	COG4926	Phage-related protein	NA
UHGV-0204581_13	Structural annotation	PF16466, NF033848, COG3500	NA	NA
UHGV-0204581_14	PHROG	phrog_1401	NA	unknown function
UHGV-0204581_14	Structural annotation	PF07761	NA	NA
UHGV-0204581_15	PHROG	phrog_1194	NA	unknown function
UHGV-0204581_15	eggNOG-mapper	1232453.BAIF02000058_gene1638	NA	NA
UHGV-0204581_15	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-0204581_16	PHROG	phrog_2657	transcriptional regulator	transcription regulation
UHGV-0204581_16	UniRef90	UniRef90_R7BHB1	Phage regulatory protein Rha family	NA
UHGV-0204581_16	eggNOG-mapper	33035.JPJF01000043_gene993	NA	NA
UHGV-0204581_16	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0204581_16	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0204581_16	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0204581_16	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0204581_18	UniRef90	UniRef90_UPI00174DD543	CopG family transcriptional regulator	NA
UHGV-0204581_18	Structural annotation	PF01402, NF041793, COG4710	NA	NA
UHGV-0204581_19	UniRef90	UniRef90_A0A8D9UIY0	NA	NA
UHGV-0204581_19	eggNOG-mapper	411459.RUMOBE_01319	NA	NA
UHGV-0204581_19	Pfam	PF16729	NA	DUF5067
UHGV-0204581_19	Structural annotation	PF16729, MF_00791, TIGR04087, COG2967	NA	NA
UHGV-0204581_20	PHROG	phrog_28918	NA	unknown function
UHGV-0204581_20	UniRef90	UniRef90_A0A318EME6	Phage-related protein	NA
UHGV-0204581_20	eggNOG-mapper	1298920.KI911353_gene2649	tape measure	NA
UHGV-0204581_20	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-0204581_22	PHROG	phrog_36112	NA	unknown function
UHGV-0204581_22	UniRef90	UniRef90_A0A8D9PG71	Tail assembly chaperone protein	NA
UHGV-0204581_22	eggNOG-mapper	1298920.KI911353_gene2651	NA	NA
UHGV-0204581_22	Structural annotation	PF10666	NA	NA
UHGV-0204581_23	UniRef90	UniRef90_A0A8D9PGN2	Major tail protein	NA
UHGV-0204581_23	Structural annotation	PF16463, TIGR02126, COG5437	NA	NA
UHGV-0204581_24	Structural annotation	PF05657	NA	NA
UHGV-0204581_25	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0204581_25	AcrCatalog	cluster_24841	NA	NA
UHGV-0204581_26	eggNOG-mapper	1298920.KI911353_gene2656	NA	NA
UHGV-0204581_26	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0204581_27	PHROG	phrog_1129	holin	lysis
UHGV-0204581_27	UniRef90	UniRef90_A0A8D9UII9	Holin	NA
UHGV-0204581_27	eggNOG-mapper	411461.DORFOR_00721	NA	NA
UHGV-0204581_27	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2
UHGV-0204581_27	Structural annotation	PF06946	NA	NA
UHGV-0204581_28	PHROG	phrog_4105	NA	unknown function
UHGV-0204581_28	eggNOG-mapper	411459.RUMOBE_00911	NA	NA
UHGV-0204581_29	eggNOG-mapper	397290.C810_01402	NA	NA
UHGV-0204581_30	UniRef90	UniRef90_A0A8D9UIY7	Rho termination factor	NA
UHGV-0204581_30	Structural annotation	PF21169	NA	NA
UHGV-0204581_31	PHROG	phrog_544	major head protein	head and packaging
UHGV-0204581_31	UniRef90	UniRef90_A0A8D9PGL1	Major capsid protein	NA
UHGV-0204581_31	eggNOG-mapper	608534.GCWU000341_02293	NA	NA
UHGV-0204581_31	NCBIFam	TIGR04387.1	N4-gp56 family major capsid protein	NA
UHGV-0204581_31	Structural annotation	PF05065, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-0204581_33	PHROG	phrog_64	portal protein	head and packaging
UHGV-0204581_33	UniRef90	UniRef90_A0A8D9PG58	Portal protein	NA
UHGV-0204581_33	eggNOG-mapper	397290.C810_01397	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0204581_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0204581_33	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0204581_34	UniRef90	UniRef90_A0A8D9UIR9	RimK-related lysine biosynthesis protein	NA
UHGV-0204581_35	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0204581_35	eggNOG-mapper	397290.C810_01391	NA	NA
UHGV-0204581_35	Structural annotation	PF02996	NA	NA
UHGV-0204581_36	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0204581_36	UniRef90	UniRef90_UPI001D009E65	phage terminase large subunit	NA
UHGV-0204581_36	eggNOG-mapper	1121866.AUGK01000003_gene1428	chromosome segregation	NA
UHGV-0204581_36	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0204581_36	COG	COG5410	NA	NA
UHGV-0204581_36	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0204581_37	UniRef90	UniRef90_UPI0018A09237	NA	NA
UHGV-0204581_37	eggNOG-mapper	411473.RUMCAL_00360	NA	NA
UHGV-0204581_37	Structural annotation	PF14359, COG3613	NA	NA
UHGV-0204581_38	PHROG	phrog_1233	NA	unknown function
UHGV-0204581_38	UniRef90	UniRef90_UPI001C39EFB9	Dienelactone hydrolase family protein	NA
UHGV-0204581_38	eggNOG-mapper	357809.Cphy_2967	NA	NA
UHGV-0204581_38	Structural annotation	PF13058	NA	NA
UHGV-0204581_39	UniRef90	UniRef90_A0A8D9PGN8	Acetyl-coA carboxylase zinc finger domain protein	NA
UHGV-0204581_40	KOfam	K01972	E6.5.1.2, ligA, ligB; DNA ligase (NAD+) [EC:6.5.1.2]	NA
UHGV-0204581_40	PHROG	phrog_3869	NAD-dependent DNA ligase	DNA, RNA and nucleotide metabolism
UHGV-0204581_40	UniRef90	UniRef90_A0A843FQD5	DNA ligase	NA
UHGV-0204581_40	eggNOG-mapper	411470.RUMGNA_00017	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA	NA
UHGV-0204581_40	Pfam	PF01653	NAD-dependent DNA ligase adenylation domain	DNA_ligase_aden
UHGV-0204581_40	Pfam	PF03120	NAD-dependent DNA ligase OB-fold domain	DNA_ligase_OB
UHGV-0204581_40	Pfam	PF00533	BRCA1 C Terminus (BRCT) domain	BRCT
UHGV-0204581_40	NCBIFam	NF005932.1	NAD-dependent DNA ligase LigA	NA
UHGV-0204581_40	COG	COG0272	NAD-dependent DNA ligase	NA
UHGV-0204581_40	HAMAP	MF_01588	DNA ligase [ligA]	NA
UHGV-0204581_40	Structural annotation	PF01653, PF03120, PF00533, MF_01588, NF005932, COG0272	NA	NA
UHGV-0204581_41	KOfam	K02469	gyrA; DNA gyrase subunit A [EC:5.6.2.2]	NA
UHGV-0204581_41	PHROG	phrog_551	DNA topoisomerase II	DNA, RNA and nucleotide metabolism
UHGV-0204581_41	UniRef90	UniRef90_A0A832SNJ2	DNA topoisomerase (ATP-hydrolyzing)	NA
UHGV-0204581_41	eggNOG-mapper	1541960.KQ78_01979	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	NA
UHGV-0204581_41	Pfam	PF00521	DNA gyrase/topoisomerase IV, subunit A	DNA_topoisoIV
UHGV-0204581_41	Pfam	PF03989	DNA gyrase C-terminal domain, beta-propeller	DNA_gyraseA_C
UHGV-0204581_41	COG	COG0188	DNA gyrase/topoisomerase IV, subunit A	NA
UHGV-0204581_41	Structural annotation	PF00521, PF03989, MF_01897, NF004043, COG0188	NA	NA
UHGV-0204581_42	KOfam	K02470	gyrB; DNA gyrase subunit B [EC:5.6.2.2]	NA
UHGV-0204581_42	PHROG	phrog_543	DNA topoisomerase II large subunit	DNA, RNA and nucleotide metabolism
UHGV-0204581_42	UniRef90	UniRef90_A0A3B9Z7X0	DNA topoisomerase (ATP-hydrolyzing)	NA
UHGV-0204581_42	eggNOG-mapper	500633.CLOHIR_02101	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner	NA
UHGV-0204581_42	Pfam	PF00204	DNA gyrase B	DNA_gyraseB
UHGV-0204581_42	Pfam	PF01751	Toprim domain	Toprim
UHGV-0204581_42	Pfam	PF00986	DNA gyrase B subunit, carboxyl terminus	DNA_gyraseB_C
UHGV-0204581_42	COG	COG0187	DNA gyrase/topoisomerase IV, subunit B	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0204581	Yes	35,819 bps	35.85%	62.77%	0.9795
UHGV-0189848	No	33,668 bps	36.79%	59.00%	0.9815