vOTU-030067

Overview

No. of genomes 2

Genome length 24,082 bps

Completeness 59.88% (medium-quality)

Host Unclassified

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-030067
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vOTU-030067
Host taxonomy
Host range breadth
Host prediction method
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0039388
BioSample	NA
Genome length	24,082 bps
CheckV completeness	59.88% (medium-quality)
CheckV contamination	0.00%
CDS count	44
CDS density	93.07%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0039388_2	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0039388_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0039388_2	UniRef90	UniRef90_A0A828T008	HTH cro/C1-type domain-containing protein	NA
UHGV-0039388_2	eggNOG-mapper	1256908.HMPREF0373_00219	sequence-specific DNA binding	NA
UHGV-0039388_2	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0039388_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0039388_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0039388_2	Structural annotation	PF12844, MF_00535, NF041951, COG1476	NA	NA
UHGV-0039388_3	UniRef90	UniRef90_A0A391P5U9	HTH cro/C1-type domain-containing protein	NA
UHGV-0039388_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0039388_10	PHROG	phrog_14970	NA	unknown function
UHGV-0039388_10	UniRef90	UniRef90_A0A3P6JH63	Essential recombination function protein	NA
UHGV-0039388_10	eggNOG-mapper	411468.CLOSCI_00315	double-strand break repair protein	NA
UHGV-0039388_10	Pfam	PF04098	Rad52/22 family double-strand break repair protein	Rad52_Rad22
UHGV-0039388_10	COG	COG4712	Predicted ssDNA annealing protein, contains HHH motif, Rad42/Rad22/RecT/erf family	NA
UHGV-0039388_11	PHROG	phrog_5070	NA	unknown function
UHGV-0039388_11	UniRef90	UniRef90_A0A285PUH1	Trimeric LpxA-like	NA
UHGV-0039388_11	eggNOG-mapper	411470.RUMGNA_02189	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell	NA
UHGV-0039388_11	Pfam	PF18836	YdcK Beta solenoid repeat	B_solenoid_ydck
UHGV-0039388_11	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0039388_12	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-0039388_12	eggNOG-mapper	411468.CLOSCI_00314	NA	NA
UHGV-0039388_12	Structural annotation	PF05772, NF007281	NA	NA
UHGV-0039388_13	PHROG	phrog_7566	NA	unknown function
UHGV-0039388_13	eggNOG-mapper	742740.HMPREF9474_04319	NA	NA
UHGV-0039388_14	PHROG	phrog_997	replication terminator	DNA, RNA and nucleotide metabolism
UHGV-0039388_14	eggNOG-mapper	1232453.BAIF02000057_gene1139	NA	NA
UHGV-0039388_15	PHROG	phrog_1029	NA	unknown function
UHGV-0039388_15	UniRef90	UniRef90_A0A3D5WKT6	Peptidase S59 domain-containing protein	NA
UHGV-0039388_15	eggNOG-mapper	1232453.BAIF02000057_gene1140	NA	NA
UHGV-0039388_15	Structural annotation	PF10065, COG5532	NA	NA
UHGV-0039388_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0039388_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0039388_16	UniRef90	UniRef90_A0A3D4XAY4	Single-stranded DNA-binding protein	NA
UHGV-0039388_16	eggNOG-mapper	411461.DORFOR_00370	Single-strand binding protein family	NA
UHGV-0039388_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0039388_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0039388_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0039388_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0039388_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0039388_18	PHROG	phrog_190	Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0039388_18	UniRef90	UniRef90_UPI00164AE2A5	NA	NA
UHGV-0039388_18	eggNOG-mapper	563031.HMPREF0666_01122	NA	NA
UHGV-0039388_18	Pfam	PF06356	NA	DUF1064
UHGV-0039388_18	Structural annotation	PF06356	NA	NA
UHGV-0039388_19	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0039388_19	UniRef90	UniRef90_A0A1C6KA77	Siphovirus Gp157	NA
UHGV-0039388_19	eggNOG-mapper	97138.C820_00779	Siphovirus Gp157	NA
UHGV-0039388_19	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0039388_19	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0039388_20	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0039388_20	UniRef90	UniRef90_A0A3A9CZ06	NA	NA
UHGV-0039388_20	eggNOG-mapper	445972.ANACOL_03338	DnaD domain protein	NA
UHGV-0039388_20	Pfam	PF19808	NA	DUF6291
UHGV-0039388_20	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0039388_20	Structural annotation	PF19808	NA	NA
UHGV-0039388_27	eggNOG-mapper	742738.HMPREF9460_02503	NA	NA
UHGV-0039388_27	Structural annotation	PF06530, MF_00674, TIGR01636, COG1342	NA	NA
UHGV-0039388_28	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0039388_28	UniRef90	UniRef90_UPI000D3E51DA	transposase	NA
UHGV-0039388_28	eggNOG-mapper	1121091.AUMP01000003_gene2580	transposase activity	NA
UHGV-0039388_28	Pfam	PF01527	Transposase	HTH_Tnp_1
UHGV-0039388_28	COG	COG2963	Transposase InsE and inactivated derivatives	NA
UHGV-0039388_28	Structural annotation	PF07141	NA	NA
UHGV-0039388_29	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0039388_29	PHROG	phrog_10250	NA	unknown function
UHGV-0039388_29	UniRef90	UniRef90_A0A415UCP7	PBSX family phage terminase large subunit	NA
UHGV-0039388_29	eggNOG-mapper	411490.ANACAC_00783	Phage terminase, large subunit, PBSX family	NA
UHGV-0039388_29	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0039388_29	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0039388_29	COG	COG1783	Phage terminase large subunit	NA
UHGV-0039388_29	Structural annotation	PF03237, PF17289, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0039388_30	PHROG	phrog_64	portal protein	head and packaging
UHGV-0039388_30	UniRef90	UniRef90_A0A856HZB4	Phage portal protein	NA
UHGV-0039388_30	eggNOG-mapper	1256908.HMPREF0373_00485	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0039388_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0039388_30	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0039388_31	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0039388_31	UniRef90	UniRef90_A0A285PUG1	Phage head morphogenesis domain	NA
UHGV-0039388_31	eggNOG-mapper	1111121.HMPREF1247_0797	cell adhesion	NA
UHGV-0039388_31	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0039388_31	COG	COG2369	NA	NA
UHGV-0039388_31	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0039388_32	eggNOG-mapper	478749.BRYFOR_07608	NA	NA
UHGV-0039388_32	Structural annotation	PF10827	NA	NA
UHGV-0039388_33	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0039388_33	UniRef90	UniRef90_A0A3A9EIF3	HK97 gp10 family phage protein	NA
UHGV-0039388_33	eggNOG-mapper	1504822.CCNO01000013_gene284	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-0039388_33	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0039388_33	Structural annotation	PF20039, TIGR01725, COG5005	NA	NA
UHGV-0039388_34	UniRef90	UniRef90_A0A174AAF6	Clp R domain-containing protein	NA
UHGV-0039388_34	Structural annotation	PF06810	NA	NA
UHGV-0039388_35	PHROG	phrog_544	major head protein	head and packaging
UHGV-0039388_35	UniRef90	UniRef90_A0A810PZM2	S-l_SbsC_C domain-containing protein	NA
UHGV-0039388_35	eggNOG-mapper	1347392.CCEZ01000005_gene1236	NA	NA
UHGV-0039388_35	Structural annotation	PF03864, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0039388_37	PHROG	phrog_17977	NA	unknown function
UHGV-0039388_37	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0039388_37	Structural annotation	PF07405, TIGR01563, COG5614	NA	NA
UHGV-0039388_38	Structural annotation	PF11367	NA	NA
UHGV-0039388_39	PHROG	phrog_885	major tail protein	tail
UHGV-0039388_39	UniRef90	UniRef90_A0A843J9F0	Ig-like domain-containing protein	NA
UHGV-0039388_39	eggNOG-mapper	1504822.CCNO01000012_gene492	NA	NA
UHGV-0039388_39	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0039388_40	UniRef90	UniRef90_A0A285PXU7	Consensus disorder prediction	NA
UHGV-0039388_42	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0039388_42	UniRef90	UniRef90_A0A285PTB9	Phage tail tape measure protein	NA
UHGV-0039388_42	eggNOG-mapper	397288.C806_00771	Phage-related minor tail protein	NA
UHGV-0039388_42	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0039388_42	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0039388_42	COG	COG5283	Phage-related tail protein	NA
UHGV-0039388_42	Structural annotation	PF10145, TIGR01760, COG5280	NA	NA
UHGV-0039388_43	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0039388_43	UniRef90	UniRef90_A0A1C5W6B6	Phage-related protein	NA
UHGV-0039388_43	eggNOG-mapper	1123263.AUKY01000068_gene490	tail component	NA
UHGV-0039388_43	COG	COG4722	Phage-related protein YomH	NA
UHGV-0039388_43	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0039388_44	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0039388_44	UniRef90	UniRef90_A0A2V2F1H4	Prophage_tail domain-containing protein	NA
UHGV-0039388_44	eggNOG-mapper	1123263.AUKY01000068_gene489	Phage minor structural protein	NA
UHGV-0039388_44	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0039388_44	COG	COG4926	Phage-related protein	NA
UHGV-0039388_44	Structural annotation	PF14594, TIGR01665, COG3500	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0039388	Yes	24,082 bps	47.47%	59.88%	0.9803
UHGV-0017545	No	20,961 bps	47.60%	52.20%	0.9811