vOTU-030145

Overview

vOTU representative UHGV-0193943

No. of genomes 2

Genome length 29,440 bps

Completeness 70.87% (medium-quality)

Host Ruminococcus B gnavus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-030145
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-00492 › vGENUS-00531 › vOTU-030145
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Ruminococcus B › Ruminococcus B gnavus
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0193943
BioSample	SAMN00993242
Genome length	29,440 bps
CheckV completeness	70.87% (medium-quality)
CheckV contamination	0.00%
CDS count	43
CDS density	93.67%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0193943_1	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-0193943_1	PHROG	phrog_95	integrase	integration and excision
UHGV-0193943_1	UniRef90	UniRef90_R5TPY9	Resolvase N-terminal domain protein	NA
UHGV-0193943_1	eggNOG-mapper	1235792.C808_03104	NA	NA
UHGV-0193943_1	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0193943_1	Pfam	PF07508	Recombinase	Recombinase
UHGV-0193943_1	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-0193943_1	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0193943_1	Structural annotation	PF07508, PF00239, NF041201, COG1961	NA	NA
UHGV-0193943_2	KOfam	K14623	dinD; DNA-damage-inducible protein D	NA
UHGV-0193943_2	PHROG	phrog_8036	NA	unknown function
UHGV-0193943_2	UniRef90	UniRef90_A0A414UZM1	DNA damage-inducible protein D	NA
UHGV-0193943_2	eggNOG-mapper	665950.HMPREF1025_02565	NA	NA
UHGV-0193943_2	AcrCatalog	cluster_17589	NA	NA
UHGV-0193943_2	PADLOC	Specificity_I_00032	Type I specificity subunit	RM
UHGV-0193943_2	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0193943_2	NCBIFam	NF008573.0	DNA damage-inducible protein D	NA
UHGV-0193943_2	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0193943_2	Structural annotation	PF09669, NF008573, COG3646	NA	NA
UHGV-0193943_3	PHROG	phrog_10680	NA	unknown function
UHGV-0193943_3	UniRef90	UniRef90_A0A412NC49	TM2 domain-containing protein	NA
UHGV-0193943_3	eggNOG-mapper	314315.LCA_0725	TM2 domain	NA
UHGV-0193943_3	Pfam	PF05154	TM2 domain	TM2
UHGV-0193943_3	COG	COG2314	NA	NA
UHGV-0193943_4	PHROG	phrog_7974	NA	unknown function
UHGV-0193943_4	UniRef90	UniRef90_UPI001C2CB056	tetratricopeptide repeat protein	NA
UHGV-0193943_4	eggNOG-mapper	1232430.CAVG010000061_gene603	NA	NA
UHGV-0193943_5	PHROG	phrog_87	metallo-protease	other
UHGV-0193943_5	UniRef90	UniRef90_A0A414UZ15	ImmA/IrrE family metallo-endopeptidase	NA
UHGV-0193943_5	eggNOG-mapper	476272.RUMHYD_01733	IrrE N-terminal-like domain	NA
UHGV-0193943_5	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0193943_5	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0193943_5	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0193943_6	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0193943_6	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0193943_6	UniRef90	UniRef90_R5TY56	Toxin-antitoxin system antitoxin component Xre family	NA
UHGV-0193943_6	eggNOG-mapper	411459.RUMOBE_00961	Bacteriophage CI repressor helix-turn-helix domain	NA
UHGV-0193943_6	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0193943_6	COG	COG3093	Plasmid maintenance system antidote protein VapI, contains XRE-type HTH domain	NA
UHGV-0193943_6	Structural annotation	PF12844, NF041951, COG1396	NA	NA
UHGV-0193943_7	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0193943_7	UniRef90	UniRef90_R5TR53	DNA-binding helix-turn-helix protein	NA
UHGV-0193943_7	eggNOG-mapper	476272.RUMHYD_02827	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0193943_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0193943_7	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0193943_7	Structural annotation	PF01381, NF041951, COG3655	NA	NA
UHGV-0193943_8	UniRef90	UniRef90_A0A412NBT7	XRE family transcriptional regulator	NA
UHGV-0193943_8	eggNOG-mapper	411461.DORFOR_00030	Helix-turn-helix XRE-family like proteins	NA
UHGV-0193943_8	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-0193943_10	PHROG	phrog_9188	NA	unknown function
UHGV-0193943_10	UniRef90	UniRef90_A0A316PYR3	Adenylate kinase	NA
UHGV-0193943_10	Structural annotation	PF11023, MF_01502, NF002796	NA	NA
UHGV-0193943_11	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0193943_11	UniRef90	UniRef90_UPI000E4A5456	Rha family transcriptional regulator	NA
UHGV-0193943_11	eggNOG-mapper	1304866.K413DRAFT_3063	TIGRFAM phage regulatory protein, Rha family	NA
UHGV-0193943_11	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0193943_11	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0193943_11	COG	COG3617	Prophage antirepressor	NA
UHGV-0193943_11	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0193943_14	COG	COG3561	Phage anti-repressor protein Ant	NA
UHGV-0193943_15	eggNOG-mapper	1235792.C808_03089	NA	NA
UHGV-0193943_19	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0193943_19	eggNOG-mapper	1232453.BAIF02000027_gene4199	NA	NA
UHGV-0193943_19	Structural annotation	PF01446	NA	NA
UHGV-0193943_20	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-0193943_20	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-0193943_20	UniRef90	UniRef90_R5TR44	RNase H type-1 domain-containing protein	NA
UHGV-0193943_20	eggNOG-mapper	1232453.BAIF02000027_gene4200	RNA-DNA hybrid ribonuclease activity	NA
UHGV-0193943_20	Pfam	PF00075	RNase H	RNase_H
UHGV-0193943_20	COG	COG0328	Ribonuclease HI	NA
UHGV-0193943_20	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-0193943_21	UniRef90	UniRef90_UPI001C0EE701	Cas9 inhibitor AcrIIA9 family protein	NA
UHGV-0193943_21	eggNOG-mapper	1235793.C809_01906	NA	NA
UHGV-0193943_21	Pfam	PF14058	PcfK-like protein	PcfK
UHGV-0193943_22	PHROG	phrog_8470	NA	unknown function
UHGV-0193943_22	UniRef90	UniRef90_UPI00042669A6	PcfJ domain-containing protein	NA
UHGV-0193943_22	eggNOG-mapper	1235793.C809_02197	PcfJ-like protein	NA
UHGV-0193943_22	Pfam	PF14284	PcfJ-like protein	PcfJ
UHGV-0193943_22	Structural annotation	PF14284	NA	NA
UHGV-0193943_23	PHROG	phrog_15077	NA	unknown function
UHGV-0193943_23	eggNOG-mapper	742740.HMPREF9474_03494	NA	NA
UHGV-0193943_23	Structural annotation	PF11300, NF033725	NA	NA
UHGV-0193943_24	PHROG	phrog_7566	NA	unknown function
UHGV-0193943_24	eggNOG-mapper	665950.HMPREF1025_02547	NA	NA
UHGV-0193943_25	eggNOG-mapper	1232453.BAIF02000010_gene3336	NA	NA
UHGV-0193943_26	PHROG	phrog_24386	NA	unknown function
UHGV-0193943_26	eggNOG-mapper	742733.HMPREF9469_05055	phosphatase activity	NA
UHGV-0193943_26	COG	COG0561	Hydroxymethylpyrimidine pyrophosphatase and other HAD family phosphatases	NA
UHGV-0193943_26	Structural annotation	TIGR01689	NA	NA
UHGV-0193943_27	UniRef90	UniRef90_A0A1C5X384	Single-stranded DNA-binding protein	NA
UHGV-0193943_27	eggNOG-mapper	935948.KE386494_gene418	PFAM single-strand binding protein Primosomal replication protein n	NA
UHGV-0193943_27	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0193943_28	UniRef90	UniRef90_A0A1C6BJU6	Transposase DDE domain	NA
UHGV-0193943_28	eggNOG-mapper	877421.AUJT01000009_gene2536	Transposase	NA
UHGV-0193943_28	COG	COG3039	Transposase and inactivated derivatives, IS5 family	NA
UHGV-0193943_28	Structural annotation	PF13701, NF033551, COG5421	NA	NA
UHGV-0193943_29	PHROG	phrog_88	major tail protein	tail
UHGV-0193943_29	UniRef90	UniRef90_A0A2N5NUL1	Phage tail protein	NA
UHGV-0193943_29	eggNOG-mapper	610130.Closa_0749	phage major tail protein, phi13 family	NA
UHGV-0193943_29	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0193943_30	PHROG	phrog_709	NA	unknown function
UHGV-0193943_30	eggNOG-mapper	879305.HMPREF9290_0132	NA	NA
UHGV-0193943_30	Structural annotation	PF11836	NA	NA
UHGV-0193943_31	PHROG	phrog_3033	NA	unknown function
UHGV-0193943_31	UniRef90	UniRef90_A0A2X2UJ60	Phage-like protein	NA
UHGV-0193943_31	eggNOG-mapper	1341157.RF007C_02605	NA	NA
UHGV-0193943_32	PHROG	phrog_1533	tail length tape measure protein	tail
UHGV-0193943_32	UniRef90	UniRef90_R5TQ69	PhageMin_Tail domain-containing protein	NA
UHGV-0193943_32	eggNOG-mapper	903814.ELI_1307	Phage-related minor tail protein	NA
UHGV-0193943_32	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0193943_32	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0193943_32	COG	COG0739	Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contains LysM domain	NA
UHGV-0193943_32	Structural annotation	TIGR01760, COG5280	NA	NA
UHGV-0193943_33	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0193943_33	UniRef90	UniRef90_UPI000E2F9A85	phage tail family protein	NA
UHGV-0193943_33	eggNOG-mapper	1235798.C817_04593	phage tail	NA
UHGV-0193943_33	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0193943_33	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0193943_33	COG	COG4722	Phage-related protein YomH	NA
UHGV-0193943_33	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0193943_34	PHROG	phrog_13289	tail protein	tail
UHGV-0193943_34	UniRef90	UniRef90_A0A412C574	Prophage_tail domain-containing protein	NA
UHGV-0193943_34	eggNOG-mapper	1235798.C817_02568	Prophage endopeptidase tail	NA
UHGV-0193943_34	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0193943_34	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0193943_34	COG	COG2885	Outer membrane protein OmpA and related peptidoglycan-associated (lipo)proteins	NA
UHGV-0193943_34	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0193943_35	PHROG	phrog_14030	NA	unknown function
UHGV-0193943_35	UniRef90	UniRef90_A0A6N3GLP8	Phage_lysozyme2 domain-containing protein	NA
UHGV-0193943_35	eggNOG-mapper	33035.JPJF01000093_gene2240	NlpC/P60 family	NA
UHGV-0193943_35	Pfam	PF18013	Phage tail lysozyme	Phage_lysozyme2
UHGV-0193943_35	COG	COG0791	Cell wall-associated hydrolase, NlpC_P60 family	NA
UHGV-0193943_35	Structural annotation	PF18013, PF05382, NF033742, COG0791	NA	NA
UHGV-0193943_36	PHROG	phrog_21765	NA	unknown function
UHGV-0193943_36	UniRef90	UniRef90_UPI000E4B80F2	collagen-like protein	NA
UHGV-0193943_36	eggNOG-mapper	97139.C824_05954	NA	NA
UHGV-0193943_37	PHROG	phrog_16164	NA	unknown function
UHGV-0193943_37	eggNOG-mapper	33035.JPJF01000093_gene2236	NA	NA
UHGV-0193943_37	Structural annotation	PF10651, TIGR02657	NA	NA
UHGV-0193943_38	eggNOG-mapper	762211.BSTEL_0612	NA	NA
UHGV-0193943_38	Structural annotation	PF09136	NA	NA
UHGV-0193943_40	KOfam	K16628	COL7A; collagen type VII alpha	NA
UHGV-0193943_40	PHROG	phrog_819	tail protein	tail
UHGV-0193943_40	UniRef90	UniRef90_R5UG71	Collagen triple helix repeat protein	NA
UHGV-0193943_40	eggNOG-mapper	428127.EUBDOL_01210	self proteolysis	NA
UHGV-0193943_40	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0193943_40	COG	COG3209	NA	NA
UHGV-0193943_41	eggNOG-mapper	1280698.AUJS01000007_gene1050	NA	NA
UHGV-0193943_41	Structural annotation	PF08931	NA	NA
UHGV-0193943_42	PHROG	phrog_1863	NA	unknown function
UHGV-0193943_42	eggNOG-mapper	1232453.BAIF02000059_gene1610	NA	NA
UHGV-0193943_43	PHROG	phrog_1129	holin	lysis
UHGV-0193943_43	UniRef90	UniRef90_UPI00051B7422	phage holin family protein	NA
UHGV-0193943_43	eggNOG-mapper	1232453.BAIF02000013_gene3227	NA	NA
UHGV-0193943_43	Pfam	PF16079	Phage holin family Hol44, in holin superfamily V	Phage_holin_5_2

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0193943	Yes	29,440 bps	40.91%	70.87%	0.9774
UHGV-0127876	No	26,143 bps	40.68%	62.93%	0.9736