vOTU-030305

Overview

vOTU representative UHGV-0196928

No. of genomes 2

Genome length 33,950 bps

Completeness 85.58% (medium-quality)

Host Lachnospiraceae

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-030305
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-02136 › vGENUS-05808 › vOTU-030305
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae
Host range breadth	Family
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0196928
BioSample	SAMN05414963
Genome length	33,950 bps
CheckV completeness	85.58% (medium-quality)
CheckV contamination	0.00%
CDS count	41
CDS density	92.21%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0196928_4	PHROG	phrog_34107	NA	unknown function
UHGV-0196928_4	eggNOG-mapper	411459.RUMOBE_01761	NA	NA
UHGV-0196928_5	eggNOG-mapper	411470.RUMGNA_00195	NA	NA
UHGV-0196928_6	UniRef90	UniRef90_R5G2D7	Putative long-chain-fatty-acid-CoA ligase	NA
UHGV-0196928_6	eggNOG-mapper	411459.RUMOBE_01759	NA	NA
UHGV-0196928_7	PHROG	phrog_2044	RNA polymerase beta subunit	DNA, RNA and nucleotide metabolism
UHGV-0196928_7	eggNOG-mapper	999413.HMPREF1094_00228	NA	NA
UHGV-0196928_7	Structural annotation	MF_00337, NF010671, COG1722	NA	NA
UHGV-0196928_8	PHROG	phrog_1891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0196928_8	UniRef90	UniRef90_C4ZC58	HNHc domain-containing protein	NA
UHGV-0196928_8	eggNOG-mapper	999413.HMPREF1094_00227	HNH endonuclease	NA
UHGV-0196928_8	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-0196928_8	Structural annotation	PF13392	NA	NA
UHGV-0196928_10	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0196928_10	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-0196928_10	eggNOG-mapper	411459.RUMOBE_01756	COG NOG14934 non supervised orthologous group	NA
UHGV-0196928_10	Structural annotation	PF21578	NA	NA
UHGV-0196928_11	PHROG	phrog_824	NA	unknown function
UHGV-0196928_11	UniRef90	UniRef90_A0A412ELZ0	VRR-NUC domain-containing protein	NA
UHGV-0196928_11	eggNOG-mapper	411459.RUMOBE_01753	VRR-NUC domain	NA
UHGV-0196928_11	Pfam	PF08774	VRR-NUC domain	VRR_NUC
UHGV-0196928_12	Structural annotation	PF12286, MF_00839, NF007780	NA	NA
UHGV-0196928_13	KOfam	K03496	parA, soj; chromosome partitioning protein	NA
UHGV-0196928_13	PHROG	phrog_164	ParA-like partition protein	DNA, RNA and nucleotide metabolism
UHGV-0196928_13	UniRef90	UniRef90_A0A412EMG9	ParA family protein	NA
UHGV-0196928_13	eggNOG-mapper	411459.RUMOBE_01750	CobQ CobB MinD ParA nucleotide binding domain protein	NA
UHGV-0196928_13	Pfam	PF13614	AAA domain	AAA_31
UHGV-0196928_13	COG	COG1192	ParA-like ATPase involved in chromosome/plasmid partitioning or cellulose biosynthesis protein BcsQ	NA
UHGV-0196928_13	Structural annotation	PF13614, MF_00533, NF010443, COG1192	NA	NA
UHGV-0196928_14	KOfam	K03497	parB, spo0J; ParB family transcriptional regulator, chromosome partitioning protein	NA
UHGV-0196928_14	PHROG	phrog_15982	NA	unknown function
UHGV-0196928_14	UniRef90	UniRef90_A0A412ELY3	ParB domain-containing protein	NA
UHGV-0196928_14	eggNOG-mapper	411470.RUMGNA_00213	ParB-like nuclease domain	NA
UHGV-0196928_14	Pfam	PF02195	ParB/Sulfiredoxin domain	ParBc
UHGV-0196928_14	Pfam	PF12961	NA	DUF3850
UHGV-0196928_14	COG	COG1475	Chromosome segregation protein Spo0J, contains ParB-like nuclease domain	NA
UHGV-0196928_14	Structural annotation	PF12961, PF02195, MF_02015, MF_00684, TIGR04285, NF003443, COG1475, COG3097	NA	NA
UHGV-0196928_15	PHROG	phrog_23707	NA	unknown function
UHGV-0196928_15	UniRef90	UniRef90_A0A1Q6KU34	NA	NA
UHGV-0196928_15	eggNOG-mapper	411470.RUMGNA_00214	NA	NA
UHGV-0196928_15	Pfam	PF04448	NA	DUF551
UHGV-0196928_16	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0196928_16	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0196928_16	UniRef90	UniRef90_A0A1C6E0P5	Single-stranded DNA-binding protein	NA
UHGV-0196928_16	eggNOG-mapper	411459.RUMOBE_01742	NA	NA
UHGV-0196928_16	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0196928_16	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0196928_16	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0196928_16	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0196928_16	Structural annotation	PF00436, MF_00984, NF005580, COG0629	NA	NA
UHGV-0196928_18	PHROG	phrog_8684	NA	unknown function
UHGV-0196928_18	UniRef90	UniRef90_A0A1C6E0T1	YopX protein	NA
UHGV-0196928_18	eggNOG-mapper	1423816.BACQ01000027_gene952	YopX protein	NA
UHGV-0196928_18	Pfam	PF09643	YopX protein	YopX
UHGV-0196928_18	Pfam	PF04448	NA	DUF551
UHGV-0196928_18	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-0196928_21	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0196928_21	UniRef90	UniRef90_UPI001D089637	NA	NA
UHGV-0196928_21	eggNOG-mapper	1304866.K413DRAFT_3028	NA	NA
UHGV-0196928_21	Structural annotation	PF04545	NA	NA
UHGV-0196928_22	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0196928_22	UniRef90	UniRef90_A0A1C6DZR4	HNH endonuclease	NA
UHGV-0196928_22	eggNOG-mapper	86416.Clopa_0335	HNH nucleases	NA
UHGV-0196928_22	Pfam	PF01844	HNH endonuclease	HNH
UHGV-0196928_22	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-0196928_22	Structural annotation	PF05766, NF008448	NA	NA
UHGV-0196928_24	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0196928_24	UniRef90	UniRef90_A0A1C6DZH3	Phage terminase-like protein, large subunit	NA
UHGV-0196928_24	eggNOG-mapper	1235798.C817_02581	Phage terminase-like protein large subunit	NA
UHGV-0196928_24	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0196928_24	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0196928_24	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0196928_24	Structural annotation	PF20441, PF03354, MF_04146, TIGR01547, COG4626	NA	NA
UHGV-0196928_25	PHROG	phrog_12	portal protein	head and packaging
UHGV-0196928_25	UniRef90	UniRef90_A0A1C6E0D8	Phage portal protein, HK97 family	NA
UHGV-0196928_25	eggNOG-mapper	86416.Clopa_0339	Phage portal protein	NA
UHGV-0196928_25	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0196928_25	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0196928_25	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0196928_25	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0196928_26	KOfam	K01358	clpP, CLPP; ATP-dependent Clp protease, protease subunit [EC:3.4.21.92]	NA
UHGV-0196928_26	PHROG	phrog_94	head maturation protease	head and packaging
UHGV-0196928_26	UniRef90	UniRef90_A0A1C6DZF0	ATP-dependent Clp protease proteolytic subunit	NA
UHGV-0196928_26	eggNOG-mapper	1235792.C808_00085	Clp protease	NA
UHGV-0196928_26	Pfam	PF00574	Clp protease	CLP_protease
UHGV-0196928_26	COG	COG0740	ATP-dependent protease ClpP, protease subunit	NA
UHGV-0196928_26	Structural annotation	PF00574, MF_00444, NF011090, COG0740	NA	NA
UHGV-0196928_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-0196928_27	UniRef90	UniRef90_A0A1C6DZ71	Phage major capsid protein, HK97 family	NA
UHGV-0196928_27	eggNOG-mapper	610130.Closa_0744	Phage capsid family	NA
UHGV-0196928_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0196928_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0196928_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0196928_27	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0196928_28	PHROG	phrog_749	NA	unknown function
UHGV-0196928_28	UniRef90	UniRef90_UPI001C0F1EE0	head-tail connector protein	NA
UHGV-0196928_28	eggNOG-mapper	1347392.CCEZ01000045_gene14	NA	NA
UHGV-0196928_29	PHROG	phrog_19734	NA	unknown function
UHGV-0196928_29	UniRef90	UniRef90_A0A0D8I708	Phage head-tail joining protein	NA
UHGV-0196928_29	eggNOG-mapper	1211817.CCAT010000053_gene2134	NA	NA
UHGV-0196928_29	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0196928_29	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0196928_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0196928_30	UniRef90	UniRef90_A0A1C6DYP9	Phage protein, HK97 gp10 family	NA
UHGV-0196928_30	eggNOG-mapper	411459.RUMOBE_00932	Phage protein, HK97 gp10 family	NA
UHGV-0196928_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0196928_30	NCBIFam	TIGR01725.1	HK97-gp10 family putative phage morphogenesis protein	NA
UHGV-0196928_30	Structural annotation	TIGR01725	NA	NA
UHGV-0196928_31	eggNOG-mapper	1235792.C808_03059	phage major tail protein, phi13 family	NA
UHGV-0196928_31	COG	COG5492	NA	NA
UHGV-0196928_31	Structural annotation	PF05657, NF040576, COG3167	NA	NA
UHGV-0196928_32	PHROG	phrog_88	major tail protein	tail
UHGV-0196928_32	UniRef90	UniRef90_A0A1C6DYZ6	Phage major tail protein, phi13 family	NA
UHGV-0196928_32	eggNOG-mapper	1195236.CTER_5106	phage major tail protein, phi13 family	NA
UHGV-0196928_32	NCBIFam	TIGR01603.1	major tail protein	NA
UHGV-0196928_32	COG	COG5492	NA	NA
UHGV-0196928_32	Structural annotation	PF04630, TIGR01603, COG3498	NA	NA
UHGV-0196928_33	PHROG	phrog_2115	tail protein	tail
UHGV-0196928_33	Structural annotation	PF11836	NA	NA
UHGV-0196928_35	KOfam	K20478	GOLGB1; golgin subfamily B member 1	NA
UHGV-0196928_35	PHROG	phrog_5218	NA	unknown function
UHGV-0196928_35	UniRef90	UniRef90_A0A1C6DY47	Phage-related minor tail protein	NA
UHGV-0196928_35	eggNOG-mapper	908340.HMPREF9406_2570	Phage tail tape measure protein TP901	NA
UHGV-0196928_35	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0196928_35	COG	COG5280	Phage-related minor tail protein	NA
UHGV-0196928_36	Structural annotation	PF20753, PF19266, TIGR01633, COG4722	NA	NA
UHGV-0196928_37	PHROG	phrog_18110	NA	unknown function
UHGV-0196928_37	UniRef90	UniRef90_A0A1C6DYP3	Phage minor structural protein, N-terminal region	NA
UHGV-0196928_37	eggNOG-mapper	411459.RUMOBE_01723	Phage minor structural protein	NA
UHGV-0196928_37	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0196928_37	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0196928_37	COG	COG4926	Phage-related protein	NA
UHGV-0196928_38	PHROG	phrog_16164	NA	unknown function
UHGV-0196928_38	eggNOG-mapper	476272.RUMHYD_00002	NA	NA
UHGV-0196928_38	Structural annotation	PF16640, NF032891	NA	NA
UHGV-0196928_39	PHROG	phrog_199	holin	lysis
UHGV-0196928_39	UniRef90	UniRef90_A0A3D4RB03	Holin	NA
UHGV-0196928_39	eggNOG-mapper	411459.RUMOBE_01714	Bacteriophage holin family	NA
UHGV-0196928_39	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-0196928_39	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-0196928_39	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-0196928_39	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-0196928_40	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0196928_40	PHROG	phrog_1794	amidase	lysis
UHGV-0196928_40	UniRef90	UniRef90_A0A1C6J4E5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0196928_40	eggNOG-mapper	397290.C810_00440	Ami_2	NA
UHGV-0196928_40	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0196928_40	COG	COG0860	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0196928_40	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-0196928_41	KOfam	K06168	miaB; tRNA-2-methylthio-N6-dimethylallyladenosine synthase [EC:2.8.4.3]	NA
UHGV-0196928_41	UniRef90	UniRef90_A0A1C6DWW6	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase	NA
UHGV-0196928_41	eggNOG-mapper	180332.JTGN01000007_gene3805	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine	NA
UHGV-0196928_41	Pfam	PF00919	NA	UPF0004
UHGV-0196928_41	Pfam	PF04055	Radical SAM superfamily	Radical_SAM
UHGV-0196928_41	NCBIFam	TIGR01574.1	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA
UHGV-0196928_41	COG	COG0621	tRNA A37 methylthiotransferase MiaB	NA
UHGV-0196928_41	HAMAP	MF_01864	tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase [miaB]	NA
UHGV-0196928_41	Structural annotation	PF00919, PF20903, MF_01864, TIGR01574, COG0621	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0196928	Yes	33,950 bps	46.05%	85.58%	0.9791
UHGV-1441106	No	20,002 bps	46.79%	50.29%	0.9817