vOTU-030388

Overview

vOTU representative UHGV-0019638

No. of genomes 2

Genome length 35,362 bps

Completeness 78.66% (medium-quality)

Host CAG-83 sp000435975

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-030388
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00006 › vSUBFAM-00227 › vGENUS-00348 › vOTU-030388
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Oscillospiraceae › CAG-83 › CAG-83 sp000435975
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0019638
BioSample	SAMEA4766055
Genome length	35,362 bps
CheckV completeness	78.66% (medium-quality)
CheckV contamination	0.00%
CDS count	56
CDS density	93.03%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019638_2	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0019638_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0019638_2	UniRef90	UniRef90_UPI001ABF7468	helix-turn-helix domain-containing protein	NA
UHGV-0019638_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019638_2	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0019638_2	Structural annotation	PF01381, MF_00535, NF041951, COG1476	NA	NA
UHGV-0019638_3	Structural annotation	PF15188, NF010673	NA	NA
UHGV-0019638_5	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-0019638_5	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0019638_5	UniRef90	UniRef90_A0A096BAN9	HTH cro/C1-type domain-containing protein	NA
UHGV-0019638_5	eggNOG-mapper	1121344.JHZO01000003_gene989	PFAM helix-turn-helix domain protein	NA
UHGV-0019638_5	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0019638_5	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0019638_5	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0019638_7	UniRef90	UniRef90_A0A8D9PDM8	Pyocin activator protein	NA
UHGV-0019638_13	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0019638_13	UniRef90	UniRef90_A0A1C5N4H2	Siphovirus Gp157	NA
UHGV-0019638_13	eggNOG-mapper	411470.RUMGNA_02192	Siphovirus Gp157	NA
UHGV-0019638_13	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0019638_13	Structural annotation	PF05565	NA	NA
UHGV-0019638_14	PHROG	phrog_7838	exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019638_14	UniRef90	UniRef90_A0A8D9UGW3	DNA repair protein RAD52-like protein	NA
UHGV-0019638_14	eggNOG-mapper	742767.HMPREF9456_02397	NA	NA
UHGV-0019638_14	Structural annotation	PF04098, TIGR00607, COG4380	NA	NA
UHGV-0019638_15	PHROG	phrog_1389	NA	unknown function
UHGV-0019638_15	eggNOG-mapper	1347392.CCEZ01000060_gene3269	NA	NA
UHGV-0019638_15	Structural annotation	PF11056, TIGR04376, COG1842	NA	NA
UHGV-0019638_16	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019638_16	UniRef90	UniRef90_UPI0004B3FA8C	AP2 domain-containing protein	NA
UHGV-0019638_16	eggNOG-mapper	1423807.BACO01000036_gene1075	NA	NA
UHGV-0019638_16	Structural annotation	PF17375	NA	NA
UHGV-0019638_17	PHROG	phrog_7566	NA	unknown function
UHGV-0019638_17	UniRef90	UniRef90_A0A8D9UHC0	Recombination enhancement function protein nuclease	NA
UHGV-0019638_17	eggNOG-mapper	693746.OBV_25470	NA	NA
UHGV-0019638_18	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-0019638_19	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-0019638_19	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-0019638_19	UniRef90	UniRef90_A0A1Q6R0X3	Single-stranded DNA-binding protein	NA
UHGV-0019638_19	eggNOG-mapper	1007096.BAGW01000023_gene151	Single-strand binding protein family	NA
UHGV-0019638_19	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-0019638_19	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-0019638_19	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-0019638_19	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-0019638_19	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-0019638_20	PHROG	phrog_15768	NA	unknown function
UHGV-0019638_20	UniRef90	UniRef90_A0A7X7IQB1	Helix-turn-helix domain-containing protein	NA
UHGV-0019638_20	eggNOG-mapper	203119.Cthe_2466	NA	NA
UHGV-0019638_20	Structural annotation	PF01475, NF006999, COG0735	NA	NA
UHGV-0019638_21	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-0019638_21	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-0019638_21	UniRef90	UniRef90_A0A3D1XEC3	DNA helicase	NA
UHGV-0019638_21	eggNOG-mapper	1408437.JNJN01000010_gene1232	Participates in initiation and elongation during chromosome replication	NA
UHGV-0019638_21	Pfam	PF00772	DnaB-like helicase N terminal domain	DnaB
UHGV-0019638_21	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-0019638_21	COG	COG0305	Replicative DNA helicase	NA
UHGV-0019638_21	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-0019638_22	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0019638_22	PHROG	phrog_34	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0019638_22	UniRef90	UniRef90_A0A2T0APF7	Endodeoxyribonuclease RusA	NA
UHGV-0019638_22	eggNOG-mapper	561177.ANHYDRO_01396	Endodeoxyribonuclease RusA	NA
UHGV-0019638_22	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0019638_22	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0019638_22	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0019638_24	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-0019638_24	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0019638_24	UniRef90	UniRef90_A0A1Q6JHY3	DNA methylase N-4	NA
UHGV-0019638_24	eggNOG-mapper	1007096.BAGW01000031_gene119	DEAD-like helicases superfamily	NA
UHGV-0019638_24	PADLOC	MTase_II_00157	Type II methyltransferase	RM
UHGV-0019638_24	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-0019638_24	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-0019638_24	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-0019638_24	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-0019638_25	PHROG	phrog_9298	radical SAM domain protein	other
UHGV-0019638_25	UniRef90	UniRef90_UPI001C3BADA7	Radical SAM protein	NA
UHGV-0019638_25	eggNOG-mapper	1235797.C816_00412	NA	NA
UHGV-0019638_25	COG	COG1032	Radical SAM superfamily enzyme YgiQ, UPF0313 family	NA
UHGV-0019638_25	Structural annotation	MF_01865, NF010916, COG0621	NA	NA
UHGV-0019638_29	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-0019638_29	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-0019638_29	dbAPIS	APIS033	Lar is functionally similar to RaI, is able to alleviate restriction and enhance modification by EcoKI. And the nucleotide sequences of their genes share 47% identity, indicating a common origin.	NA
UHGV-0019638_29	Structural annotation	PF14354, TIGR03655, COG4888	NA	NA
UHGV-0019638_30	UniRef90	UniRef90_A0A8D9PDT5	Hydrogenase/urease nickel incorporation protein	NA
UHGV-0019638_33	eggNOG-mapper	693746.OBV_18010	NA	NA
UHGV-0019638_33	Structural annotation	TIGR01636	NA	NA
UHGV-0019638_35	PHROG	phrog_606	terminase small subunit	head and packaging
UHGV-0019638_35	UniRef90	UniRef90_UPI001D07B715	DNA-packaging protein	NA
UHGV-0019638_36	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019638_36	eggNOG-mapper	1408437.JNJN01000010_gene1241	NA	NA
UHGV-0019638_38	KOfam	K14060	pinR; putative DNA-invertase from lambdoid prophage Rac	NA
UHGV-0019638_38	PHROG	phrog_125	DNA invertase	DNA, RNA and nucleotide metabolism
UHGV-0019638_38	UniRef90	UniRef90_R7EUM7	Putative site-specific recombinase	NA
UHGV-0019638_38	eggNOG-mapper	693746.OBV_34630	Resolvase, N terminal domain	NA
UHGV-0019638_38	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-0019638_38	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA
UHGV-0019638_38	Structural annotation	PF00239, PF02796, NF009949, COG1961	NA	NA
UHGV-0019638_39	Structural annotation	PF19190, MF_00791, NF003967, COG2967	NA	NA
UHGV-0019638_40	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0019638_40	UniRef90	UniRef90_A0A6I2QXZ5	Phage terminase large subunit	NA
UHGV-0019638_40	eggNOG-mapper	1298920.KI911353_gene2682	TIGRFAM Phage	NA
UHGV-0019638_40	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0019638_40	COG	COG5410	NA	NA
UHGV-0019638_40	Structural annotation	PF17289, PF02562, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0019638_41	PHROG	phrog_64	portal protein	head and packaging
UHGV-0019638_41	UniRef90	UniRef90_A0A6I2QXE1	Phage portal protein	NA
UHGV-0019638_41	eggNOG-mapper	1123263.AUKY01000015_gene1609	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0019638_41	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0019638_41	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0019638_43	PHROG	phrog_1328	major head protein	head and packaging
UHGV-0019638_43	UniRef90	UniRef90_UPI00164DD2D5	NA	NA
UHGV-0019638_43	eggNOG-mapper	665956.HMPREF1032_03619	NA	NA
UHGV-0019638_43	Pfam	PF17236	NA	DUF5309
UHGV-0019638_43	Structural annotation	PF17236, MF_04119, NF041162, COG4653	NA	NA
UHGV-0019638_44	UniRef90	UniRef90_UPI001898B4B4	phage head-tail connector protein	NA
UHGV-0019638_44	eggNOG-mapper	1298920.KI911353_gene2658	NA	NA
UHGV-0019638_44	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0019638_44	Structural annotation	TIGR01560	NA	NA
UHGV-0019638_45	eggNOG-mapper	1121866.AUGK01000003_gene1432	NA	NA
UHGV-0019638_46	eggNOG-mapper	1298920.KI911353_gene2654	NA	NA
UHGV-0019638_47	Structural annotation	PF06141, TIGR02367, COG3167	NA	NA
UHGV-0019638_48	PHROG	phrog_158	major tail protein	tail
UHGV-0019638_48	UniRef90	UniRef90_A0A1C6L0H9	Phage tail protein	NA
UHGV-0019638_48	eggNOG-mapper	1232453.BAIF02000058_gene1634	NA	NA
UHGV-0019638_48	Structural annotation	PF16463, TIGR02241, COG5437	NA	NA
UHGV-0019638_49	UniRef90	UniRef90_UPI0018999178	NA	NA
UHGV-0019638_49	eggNOG-mapper	469596.HMPREF9488_01311	NA	NA
UHGV-0019638_49	Pfam	PF16478	NA	DUF5055
UHGV-0019638_49	Structural annotation	PF16478	NA	NA
UHGV-0019638_50	eggNOG-mapper	1211844.CBLM010000023_gene987	NA	NA
UHGV-0019638_51	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-0019638_51	UniRef90	UniRef90_A0A1C6L0H4	Phage-related protein	NA
UHGV-0019638_51	eggNOG-mapper	1121866.AUGK01000003_gene1437	phage tail tape measure protein	NA
UHGV-0019638_51	COG	COG1280	Threonine/homoserine/homoserine lactone efflux protein	NA
UHGV-0019638_51	Structural annotation	PF20155, TIGR01760, COG3941	NA	NA
UHGV-0019638_52	PHROG	phrog_1194	NA	unknown function
UHGV-0019638_52	UniRef90	UniRef90_A0A0B3VTI7	NA	NA
UHGV-0019638_52	eggNOG-mapper	1414720.CBYM010000002_gene561	NA	NA
UHGV-0019638_52	Pfam	PF20458	NA	DUF6711
UHGV-0019638_52	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-0019638_53	PHROG	phrog_6616	tail protein	tail
UHGV-0019638_53	UniRef90	UniRef90_R5GWP5	KID repeat family protein	NA
UHGV-0019638_53	eggNOG-mapper	469596.HMPREF9488_01318	NA	NA
UHGV-0019638_53	Structural annotation	PF05113, NF033848, COG3500	NA	NA
UHGV-0019638_54	PHROG	phrog_372	tail protein	tail
UHGV-0019638_54	UniRef90	UniRef90_UPI001373A0FD	NA	NA
UHGV-0019638_54	eggNOG-mapper	1235802.C823_05263	NA	NA
UHGV-0019638_54	Pfam	PF05895	NA	DUF859
UHGV-0019638_54	COG	COG4675	Phage tail collar domain	NA
UHGV-0019638_54	Structural annotation	PF05895, MF_04116, NF010681, COG3401, COG4675	NA	NA
UHGV-0019638_56	KOfam	K01104	E3.1.3.48; protein-tyrosine phosphatase [EC:3.1.3.48]	NA
UHGV-0019638_56	UniRef90	UniRef90_UPI001BF10870	Tyrosine-protein phosphatase	NA
UHGV-0019638_56	eggNOG-mapper	610130.Closa_0587	Tyrosine phosphatase family	NA
UHGV-0019638_56	Pfam	PF13350	Tyrosine phosphatase family	Y_phosphatase3
UHGV-0019638_56	COG	COG2365	Protein tyrosine/serine phosphatase Oca4	NA
UHGV-0019638_56	Structural annotation	PF13350, TIGR01244, COG2365	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0019638	Yes	35,362 bps	54.77%	78.66%	0.9817
UHGV-0002060	No	35,195 bps	54.40%	78.27%	0.9808