vOTU-030503

Overview

vOTU representative UHGV-2041976

No. of genomes 2

Genome length 17,624 bps

Completeness 51.29% (medium-quality)

Host Unclassified

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-030503
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00005 › vOTU-030503
Host taxonomy
Host range breadth
Host prediction method
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-2041976
BioSample	SAMN03418253
Genome length	17,624 bps
CheckV completeness	51.29% (medium-quality)
CheckV contamination	0.00%
CDS count	28
CDS density	88.23%
tRNA count	1
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2041976_2	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-2041976_2	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-2041976_2	UniRef90	UniRef90_I0GQX5	HTH cro/C1-type domain-containing protein	NA
UHGV-2041976_2	eggNOG-mapper	927704.SELR_14540	DNA-binding helix-turn-helix protein	NA
UHGV-2041976_2	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2041976_2	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-2041976_6	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2041976_6	eggNOG-mapper	1392502.JNIO01000002_gene51	NA	NA
UHGV-2041976_6	Structural annotation	PF21578, TIGR00166, COG5655	NA	NA
UHGV-2041976_8	eggNOG-mapper	1123250.KB908417_gene651	NA	NA
UHGV-2041976_8	Structural annotation	TIGR01636	NA	NA
UHGV-2041976_10	PHROG	phrog_119	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2041976_10	UniRef90	UniRef90_UPI000DA62951	HNH endonuclease	NA
UHGV-2041976_10	eggNOG-mapper	927704.SELR_11230	HNH endonuclease	NA
UHGV-2041976_10	Pfam	PF01844	HNH endonuclease	HNH
UHGV-2041976_10	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-2041976_11	PHROG	phrog_1066	NA	unknown function
UHGV-2041976_11	eggNOG-mapper	1094508.Tsac_2428	NA	NA
UHGV-2041976_11	Structural annotation	PF05119, TIGR01558	NA	NA
UHGV-2041976_12	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-2041976_12	UniRef90	UniRef90_UPI000F8DAF8B	terminase large subunit	NA
UHGV-2041976_12	eggNOG-mapper	1232428.CAVO010000003_gene1012	Phage Terminase	NA
UHGV-2041976_12	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-2041976_12	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-2041976_12	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-2041976_12	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-2041976_13	PHROG	phrog_12	portal protein	head and packaging
UHGV-2041976_13	UniRef90	UniRef90_UPI0018C64799	phage portal protein	NA
UHGV-2041976_13	eggNOG-mapper	1232428.CAVO010000003_gene1011	Phage portal protein	NA
UHGV-2041976_13	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-2041976_13	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-2041976_13	COG	COG4695	Phage portal protein BeeE	NA
UHGV-2041976_13	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-2041976_14	KOfam	K06904	NA	NA
UHGV-2041976_14	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-2041976_14	UniRef90	UniRef90_UPI0018C73A25	HK97 family phage prohead protease	NA
UHGV-2041976_14	eggNOG-mapper	1235755.ANAM01000006_gene2374	Caudovirus prohead serine protease	NA
UHGV-2041976_14	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-2041976_14	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-2041976_14	COG	COG3740	Phage head maturation protease	NA
UHGV-2041976_14	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-2041976_15	PHROG	phrog_10	major head protein	head and packaging
UHGV-2041976_15	UniRef90	UniRef90_A0A6N9PTD8	Phage major capsid protein	NA
UHGV-2041976_15	eggNOG-mapper	1341151.ASZU01000004_gene260	Phage capsid family	NA
UHGV-2041976_15	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-2041976_15	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-2041976_15	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-2041976_15	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-2041976_16	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-2041976_16	UniRef90	UniRef90_UPI000AEA599F	head-tail connector protein	NA
UHGV-2041976_16	eggNOG-mapper	66692.ABC1335	Phage gp6-like head-tail connector protein	NA
UHGV-2041976_16	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-2041976_16	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-2041976_16	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-2041976_17	PHROG	phrog_25	head closure Hc1	connector
UHGV-2041976_17	UniRef90	UniRef90_UPI0018FEB5C1	phage head closure protein	NA
UHGV-2041976_17	eggNOG-mapper	568816.Acin_1972	Phage head-tail joining protein	NA
UHGV-2041976_17	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-2041976_17	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-2041976_17	COG	COG5614	Phage head-tail adaptor	NA
UHGV-2041976_17	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-2041976_18	UniRef90	UniRef90_UPI0018C69479	HK97 gp10 family phage protein	NA
UHGV-2041976_18	eggNOG-mapper	1211817.CCAT010000008_gene945	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-2041976_18	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-2041976_18	Structural annotation	PF17395, TIGR01725, COG5005	NA	NA
UHGV-2041976_19	PHROG	phrog_525	NA	unknown function
UHGV-2041976_19	Pfam	PF20765	NA	DUF6838
UHGV-2041976_19	Structural annotation	PF20765, TIGR01633, COG5003	NA	NA
UHGV-2041976_20	KOfam	K07450	K07450; putative resolvase	NA
UHGV-2041976_20	PHROG	phrog_6620	transposase	integration and excision
UHGV-2041976_20	UniRef90	UniRef90_UPI001F1FAD85	IS607 family transposase	NA
UHGV-2041976_20	eggNOG-mapper	500635.MITSMUL_04161	Resolvase, N terminal domain	NA
UHGV-2041976_20	Pfam	PF13411	MerR HTH family regulatory protein	MerR_1
UHGV-2041976_20	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2041976_20	NCBIFam	NF033518.0	IS607 family transposase	NA
UHGV-2041976_20	COG	COG2452	Predicted site-specific integrase-resolvase	NA
UHGV-2041976_20	Structural annotation	PF00239, PF12728, NF033518, COG2452	NA	NA
UHGV-2041976_21	KOfam	K07496	K07496; putative transposase	NA
UHGV-2041976_21	PHROG	phrog_506	transposase	integration and excision
UHGV-2041976_21	UniRef90	UniRef90_UPI001F1DFD98	transposase	NA
UHGV-2041976_21	eggNOG-mapper	1410618.JNKI01000016_gene1804	NA	NA
UHGV-2041976_21	PADLOC	Type_V_V_U4	Cas12	CRISPR-CAS
UHGV-2041976_21	Pfam	PF12323	Helix-turn-helix domain	HTH_OrfB_IS605
UHGV-2041976_21	Pfam	PF01385	Probable transposase	OrfB_IS605
UHGV-2041976_21	Pfam	PF07282	Putative transposase DNA-binding domain	OrfB_Zn_ribbon
UHGV-2041976_21	NCBIFam	NF040570.1	RNA-guided endonuclease TnpB family protein	NA
UHGV-2041976_21	COG	COG0675	Transposase	NA
UHGV-2041976_21	Structural annotation	PF07282, PF01385, NF038281, COG0675	NA	NA
UHGV-2041976_22	PHROG	phrog_10797	NA	unknown function
UHGV-2041976_22	UniRef90	UniRef90_UPI001C0637AC	glycoprotease	NA
UHGV-2041976_22	eggNOG-mapper	1123511.KB905857_gene1685	NA	NA
UHGV-2041976_25	UniRef90	UniRef90_A0A641X3F1	Helix-turn-helix transcriptional regulator	NA
UHGV-2041976_25	eggNOG-mapper	546271.Selsp_0815	sequence-specific DNA binding	NA
UHGV-2041976_25	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2041976_25	COG	COG1598	Antitoxin component HicB of the HicAB toxin-antitoxin system	NA
UHGV-2041976_25	Structural annotation	PF01381, NF040522, COG2944	NA	NA
UHGV-2041976_26	PHROG	phrog_10390	NA	unknown function
UHGV-2041976_26	UniRef90	UniRef90_A0A415Z633	NA	NA
UHGV-2041976_26	eggNOG-mapper	679192.HMPREF9013_1310	NA	NA
UHGV-2041976_26	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-2041976_26	COG	COG3600	NA	NA
UHGV-2041976_26	Structural annotation	PF13274, COG3600	NA	NA
UHGV-2041976_27	eggNOG-mapper	1321774.HMPREF9108_00995	NA	NA
UHGV-2041976_28	KOfam	K06400	spoIVCA; site-specific DNA recombinase	NA
UHGV-2041976_28	PHROG	phrog_95	integrase	integration and excision
UHGV-2041976_28	UniRef90	UniRef90_UPI001D0263A3	recombinase family protein	NA
UHGV-2041976_28	eggNOG-mapper	1123511.KB905857_gene1691	overlaps another CDS with the same product name	NA
UHGV-2041976_28	Pfam	PF00239	Resolvase, N terminal domain	Resolvase
UHGV-2041976_28	Pfam	PF07508	Recombinase	Recombinase
UHGV-2041976_28	Pfam	PF13408	Recombinase zinc beta ribbon domain	Zn_ribbon_recom
UHGV-2041976_28	COG	COG1961	Site-specific DNA recombinase SpoIVCA/DNA invertase PinE	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2041976	Yes	17,624 bps	43.54%	51.29%	0.9711
UHGV-0200794	No	12,161 bps	44.66%	35.48%	0.9758