vOTU-030624

Overview

vOTU representative UHGV-0202915

No. of genomes 2

Genome length 33,463 bps

Completeness 73.60% (medium-quality)

Host Enterobacter roggenkampii

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-030624
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00016 › vSUBFAM-00066 › vOTU-030624
Host taxonomy	Bacteria › Proteobacteria › Gammaproteobacteria › Enterobacterales › Enterobacteriaceae › Enterobacter › Enterobacter roggenkampii
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0202915
BioSample	NA
Genome length	33,463 bps
CheckV completeness	73.60% (medium-quality)
CheckV contamination	0.00%
CDS count	44
CDS density	88.40%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0202915_1	KOfam	K12149	dinI; DNA-damage-inducible protein I	NA
UHGV-0202915_1	PHROG	phrog_189	RecA filament binding protein DinI	DNA, RNA and nucleotide metabolism
UHGV-0202915_1	UniRef90	UniRef90_A0A6B0TF90	DinI family protein	NA
UHGV-0202915_1	eggNOG-mapper	1399774.JDWH01000044_gene1728	DinI-like family	NA
UHGV-0202915_1	Pfam	PF06183	DinI-like family	DinI
UHGV-0202915_2	KOfam	K20534	gtrB; polyisoprenyl-phosphate glycosyltransferase [EC:2.4.-.-]	NA
UHGV-0202915_2	PHROG	phrog_34335	NA	unknown function
UHGV-0202915_2	UniRef90	UniRef90_UPI00044DFD95	glycosyltransferase family 2 protein	NA
UHGV-0202915_2	eggNOG-mapper	754331.AEME01000001_gene18	Involved in O antigen modification. Catalyzes the transfer of the glucose residue from UDP-glucose to a lipid carrier (By similarity)	NA
UHGV-0202915_2	Pfam	PF00535	Glycosyl transferase family 2	Glycos_transf_2
UHGV-0202915_2	COG	COG0463	Glycosyltransferase involved in cell wall bisynthesis	NA
UHGV-0202915_2	Structural annotation	PF00535, MF_01164, NF007986, COG1215	NA	NA
UHGV-0202915_3	PHROG	phrog_4829	GtrC-like O-antigen conversion translocase	moron, auxiliary metabolic gene and host takeover
UHGV-0202915_3	UniRef90	UniRef90_UPI00196B3491	glucosyltransferase domain-containing protein	NA
UHGV-0202915_3	eggNOG-mapper	716541.ECL_03180	membrane	NA
UHGV-0202915_3	Pfam	PF14264	Glucosyl transferase GtrII	Glucos_trans_II
UHGV-0202915_3	Structural annotation	PF14264, TIGR03663, COG5305	NA	NA
UHGV-0202915_4	PHROG	phrog_10470	UmuD-like protein	DNA, RNA and nucleotide metabolism
UHGV-0202915_4	UniRef90	UniRef90_UPI001A93D581	humD	NA
UHGV-0202915_4	eggNOG-mapper	90371.CY43_11975	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-0202915_4	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-0202915_5	PHROG	phrog_188	tail fiber assembly protein	tail
UHGV-0202915_5	UniRef90	UniRef90_UPI000451AE20	tail fiber assembly protein	NA
UHGV-0202915_5	eggNOG-mapper	1407493.U5P083_9CAUD	Caudovirales tail fibre assembly protein	NA
UHGV-0202915_5	Pfam	PF02413	Caudovirales tail fibre assembly protein, lambda gpK	Caudo_TAP
UHGV-0202915_5	Structural annotation	PF02413	NA	NA
UHGV-0202915_6	PHROG	phrog_18834	NA	unknown function
UHGV-0202915_6	eggNOG-mapper	399742.Ent638_2582	NA	NA
UHGV-0202915_6	Structural annotation	PF09458, NF012201	NA	NA
UHGV-0202915_7	PHROG	phrog_203	tail protein	tail
UHGV-0202915_7	UniRef90	UniRef90_A0A5B7XH40	NA	NA
UHGV-0202915_7	eggNOG-mapper	399742.Ent638_2583	NA	NA
UHGV-0202915_7	Pfam	PF10076	Bacteriophage Mu-like, Gp48	Phage_Mu_Gp48
UHGV-0202915_7	COG	COG3778	NA	NA
UHGV-0202915_7	Structural annotation	PF10076, COG3778	NA	NA
UHGV-0202915_8	PHROG	phrog_2103	baseplate protein	tail
UHGV-0202915_8	UniRef90	UniRef90_A0A5B7XJJ8	Baseplate J/gp47 family protein	NA
UHGV-0202915_8	eggNOG-mapper	1225789.M1FQW3_9CAUD	Baseplate J-like protein	NA
UHGV-0202915_8	Pfam	PF04865	Baseplate J-like protein	Baseplate_J
UHGV-0202915_8	Structural annotation	PF04865, PF21379, MF_04102, TIGR02243, COG3299	NA	NA
UHGV-0202915_9	PHROG	phrog_180	tail protein	tail
UHGV-0202915_9	UniRef90	UniRef90_A0A5B7XIB2	Phage tail protein	NA
UHGV-0202915_9	eggNOG-mapper	1225789.M1FPE5_9CAUD	Phage protein GP46	NA
UHGV-0202915_9	Pfam	PF07409	NA	GP46
UHGV-0202915_9	Structural annotation	PF07409, COG4381	NA	NA
UHGV-0202915_10	PHROG	phrog_28548	NA	unknown function
UHGV-0202915_10	UniRef90	UniRef90_UPI00194E9A5E	phage baseplate assembly protein V	NA
UHGV-0202915_10	eggNOG-mapper	399742.Ent638_2586	assembly, protein	NA
UHGV-0202915_10	Pfam	PF06890	Bacteriophage Mu Gp45 spike protein	Phage_Mu_Gp45
UHGV-0202915_10	NCBIFam	TIGR01644.1	phage baseplate assembly protein V	NA
UHGV-0202915_10	COG	COG4384	NA	NA
UHGV-0202915_10	Structural annotation	PF06890, MF_00216, TIGR01644, COG4384	NA	NA
UHGV-0202915_11	PHROG	phrog_177	tail protein	tail
UHGV-0202915_11	UniRef90	UniRef90_A0A5B7XGF5	Baseplate protein	NA
UHGV-0202915_11	eggNOG-mapper	399742.Ent638_2587	tail protein	NA
UHGV-0202915_11	Pfam	PF21683	Mu phage baseplate assembly protein GpP-like, N-terminal	GpP-like_1st
UHGV-0202915_11	COG	COG4379	Mu-like prophage tail protein gpP	NA
UHGV-0202915_11	Structural annotation	PF14594, NF033848, COG4379	NA	NA
UHGV-0202915_12	PHROG	phrog_18574	NA	unknown function
UHGV-0202915_12	eggNOG-mapper	754331.AEME01000001_gene3957	NA	NA
UHGV-0202915_13	PHROG	phrog_1419	tail protein	tail
UHGV-0202915_13	UniRef90	UniRef90_UPI0013FE2182	LamG domain-containing protein	NA
UHGV-0202915_13	eggNOG-mapper	911008.GLAD_00008	transmembrane signaling receptor activity	NA
UHGV-0202915_13	COG	COG0840	Methyl-accepting chemotaxis protein (MCP)	NA
UHGV-0202915_14	PHROG	phrog_184	DNA circularization	DNA, RNA and nucleotide metabolism
UHGV-0202915_14	UniRef90	UniRef90_A0A5B7XGS4	DNA circularization protein	NA
UHGV-0202915_14	eggNOG-mapper	399742.Ent638_2588	DNA circulation protein	NA
UHGV-0202915_14	Pfam	PF07157	DNA circularisation protein N-terminus	DNA_circ_N
UHGV-0202915_14	COG	COG4228	Mu-like prophage DNA circulation protein	NA
UHGV-0202915_14	Structural annotation	PF07157, TIGR01633, COG4228	NA	NA
UHGV-0202915_15	PHROG	phrog_3707	membrane-flanked domain	moron, auxiliary metabolic gene and host takeover
UHGV-0202915_15	UniRef90	UniRef90_A0A5B7XI74	PH domain-containing protein	NA
UHGV-0202915_15	eggNOG-mapper	1502770.JQMG01000001_gene792	Evidence 3 Function proposed based on presence of conserved amino acid motif, structural feature or limited homology	NA
UHGV-0202915_15	Pfam	PF03703	Bacterial PH domain	bPH_2
UHGV-0202915_15	COG	COG3428	NA	NA
UHGV-0202915_16	PHROG	phrog_28	tail length tape measure protein	tail
UHGV-0202915_16	UniRef90	UniRef90_A0A5B7XGK6	Phage tail tape measure protein	NA
UHGV-0202915_16	eggNOG-mapper	667121.ET1_08_01170	phage tail tape measure protein	NA
UHGV-0202915_16	Pfam	PF10145	Phage-related minor tail protein	PhageMin_Tail
UHGV-0202915_16	NCBIFam	TIGR01760.1	phage tail tape measure protein	NA
UHGV-0202915_16	COG	COG5283	Phage-related tail protein	NA
UHGV-0202915_16	Structural annotation	TIGR01760	NA	NA
UHGV-0202915_17	PHROG	phrog_166	tail protein	tail
UHGV-0202915_17	UniRef90	UniRef90_A0A5B7XH48	Phage tail assembly protein	NA
UHGV-0202915_17	eggNOG-mapper	667121.ET1_08_01160	Phage tail assembly chaperone proteins, E, or 41 or 14	NA
UHGV-0202915_17	Pfam	PF10109	Phage tail assembly chaperone proteins, E, or 41 or 14	Phage_TAC_7
UHGV-0202915_17	Structural annotation	PF10109, COG4518	NA	NA
UHGV-0202915_18	PHROG	phrog_185	tail tube protein	tail
UHGV-0202915_18	UniRef90	UniRef90_A0A5B7XJK8	Phage tail protein	NA
UHGV-0202915_18	eggNOG-mapper	90371.CY43_10585	phage tail	NA
UHGV-0202915_18	Pfam	PF10618	Phage tail tube protein	Tail_tube
UHGV-0202915_18	Structural annotation	PF10618, TIGR02241, COG3498	NA	NA
UHGV-0202915_19	PHROG	phrog_165	tail sheath	tail
UHGV-0202915_19	UniRef90	UniRef90_A0A5B7XIB9	Phage tail protein	NA
UHGV-0202915_19	eggNOG-mapper	399742.Ent638_2592	Tail sheath protein	NA
UHGV-0202915_19	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-0202915_19	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-0202915_19	COG	COG4386	Mu-like prophage tail sheath protein gpL	NA
UHGV-0202915_19	Structural annotation	PF10758, COG4386	NA	NA
UHGV-0202915_20	PHROG	phrog_208	NA	unknown function
UHGV-0202915_20	UniRef90	UniRef90_A0A5B7XIP8	NA	NA
UHGV-0202915_20	eggNOG-mapper	399742.Ent638_2593	NA	NA
UHGV-0202915_20	Pfam	PF10948	NA	DUF2635
UHGV-0202915_20	Structural annotation	PF10948	NA	NA
UHGV-0202915_21	PHROG	phrog_209	portal protein	head and packaging
UHGV-0202915_21	UniRef90	UniRef90_A0A156GFE4	Bacteriophage protein	NA
UHGV-0202915_21	eggNOG-mapper	399742.Ent638_2594	NA	NA
UHGV-0202915_21	Structural annotation	PF09646	NA	NA
UHGV-0202915_22	PHROG	phrog_879	tail completion or Neck1 protein	connector
UHGV-0202915_22	UniRef90	UniRef90_A0A0H3NMS1	Predicted bacteriophage protein	NA
UHGV-0202915_22	eggNOG-mapper	754331.AEME01000001_gene209	NA	NA
UHGV-0202915_22	Structural annotation	TIGR01725	NA	NA
UHGV-0202915_23	PHROG	phrog_25	head closure Hc1	connector
UHGV-0202915_23	UniRef90	UniRef90_A0A5B7XH64	Head-tail adaptor protein	NA
UHGV-0202915_23	eggNOG-mapper	399742.Ent638_2596	Phage head-tail joining protein	NA
UHGV-0202915_23	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0202915_23	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0202915_23	COG	COG5614	Phage head-tail adaptor	NA
UHGV-0202915_23	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0202915_24	PHROG	phrog_40	head-tail adaptor Ad1	connector
UHGV-0202915_24	UniRef90	UniRef90_UPI000451C1D3	head-tail connector protein	NA
UHGV-0202915_24	eggNOG-mapper	399742.Ent638_2597	Phage gp6-like head-tail connector protein	NA
UHGV-0202915_24	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0202915_24	NCBIFam	TIGR01560.2	head-tail connector protein	NA
UHGV-0202915_24	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0202915_25	PHROG	phrog_10	major head protein	head and packaging
UHGV-0202915_25	UniRef90	UniRef90_A0A345C9L3	Phage major capsid protein	NA
UHGV-0202915_25	eggNOG-mapper	399742.Ent638_2598	TIGRFAM Phage major capsid protein, HK97	NA
UHGV-0202915_25	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-0202915_25	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-0202915_25	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-0202915_25	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-0202915_26	KOfam	K06904	NA	NA
UHGV-0202915_26	PHROG	phrog_80	head maturation protease	head and packaging
UHGV-0202915_26	UniRef90	UniRef90_A0A156GG68	HK97 family phage prohead protease	NA
UHGV-0202915_26	eggNOG-mapper	399742.Ent638_2599	PFAM Peptidase U35, phage prohead HK97	NA
UHGV-0202915_26	Pfam	PF04586	Caudovirus prohead serine protease	Peptidase_S78
UHGV-0202915_26	NCBIFam	TIGR01543.1	HK97 family phage prohead protease	NA
UHGV-0202915_26	COG	COG3740	Phage head maturation protease	NA
UHGV-0202915_26	Structural annotation	PF04586, TIGR01543, COG3740	NA	NA
UHGV-0202915_27	PHROG	phrog_12	portal protein	head and packaging
UHGV-0202915_27	UniRef90	UniRef90_A4WC38	Phage portal protein, HK97 family	NA
UHGV-0202915_27	eggNOG-mapper	399742.Ent638_2600	TIGRFAM Phage portal protein, HK97	NA
UHGV-0202915_27	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0202915_27	NCBIFam	TIGR01537.1	phage portal protein	NA
UHGV-0202915_27	COG	COG4695	Phage portal protein BeeE	NA
UHGV-0202915_27	Structural annotation	PF04860, MF_04135, TIGR01537, COG4695	NA	NA
UHGV-0202915_28	PHROG	phrog_7105	NA	unknown function
UHGV-0202915_28	UniRef90	UniRef90_A0A163XUY0	Membrane protein	NA
UHGV-0202915_28	eggNOG-mapper	1332071.L581_3145	NA	NA
UHGV-0202915_29	PHROG	phrog_9	terminase large subunit	head and packaging
UHGV-0202915_29	UniRef90	UniRef90_A0A076LNR4	Putative phage terminase, large subunit	NA
UHGV-0202915_29	eggNOG-mapper	667121.ET1_08_01050	terminase	NA
UHGV-0202915_29	Pfam	PF03354	Terminase large subunit, ATPase domain	TerL_ATPase
UHGV-0202915_29	Pfam	PF20441	Terminase large subunit, endonuclease domain	TerL_nuclease
UHGV-0202915_29	COG	COG4626	Phage terminase-like protein, large subunit, contains N-terminal HTH domain	NA
UHGV-0202915_29	Structural annotation	PF20441, PF03354, MF_04145, TIGR01547, COG4626	NA	NA
UHGV-0202915_30	PHROG	phrog_83	terminase small subunit	head and packaging
UHGV-0202915_30	UniRef90	UniRef90_A0A0P8HY14	Terminase	NA
UHGV-0202915_30	eggNOG-mapper	640513.Entas_3083	TIGRFAM phage terminase, small subunit	NA
UHGV-0202915_30	Pfam	PF05119	Phage terminase, small subunit	Terminase_4
UHGV-0202915_30	NCBIFam	TIGR01558.1	phage terminase small subunit P27 family	NA
UHGV-0202915_30	COG	COG3747	Phage terminase, small subunit	NA
UHGV-0202915_30	Structural annotation	PF05119, TIGR01558, COG3747	NA	NA
UHGV-0202915_33	PHROG	phrog_518	Rha-like transcriptional regulator	transcription regulation
UHGV-0202915_33	UniRef90	UniRef90_I4SWS2	Rha protein	NA
UHGV-0202915_33	eggNOG-mapper	10713.Q38450_BPPH8	DNA binding	NA
UHGV-0202915_33	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0202915_33	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0202915_33	Structural annotation	PF09669, TIGR02681, COG3646	NA	NA
UHGV-0202915_34	PHROG	phrog_1026	Rz-like spanin	lysis
UHGV-0202915_34	eggNOG-mapper	1218086.BBNB01000014_gene2070	NA	NA
UHGV-0202915_35	KOfam	K22918	ttsA; typhoid toxin secretion A	NA
UHGV-0202915_35	PHROG	phrog_12853	NA	unknown function
UHGV-0202915_35	UniRef90	UniRef90_A0A0V9JGI2	PG_binding_3 domain-containing protein	NA
UHGV-0202915_35	eggNOG-mapper	911008.GLAD_00552	secretion activating protein	NA
UHGV-0202915_35	Pfam	PF05838	Glycosyl hydrolase 108	Glyco_hydro_108
UHGV-0202915_35	Pfam	PF09374	Predicted Peptidoglycan domain	PG_binding_3
UHGV-0202915_35	COG	COG3926	Lysozyme family protein	NA
UHGV-0202915_35	Structural annotation	PF05838, PF09374, NF040573, COG3926	NA	NA
UHGV-0202915_36	PHROG	phrog_217	holin	lysis
UHGV-0202915_36	UniRef90	UniRef90_A0A822WL45	Putative prophage membrane protein	NA
UHGV-0202915_36	eggNOG-mapper	1147158.K7PKN9_9CAUD	Pfam:Phage_holin_3_7	NA
UHGV-0202915_36	Pfam	PF05449	Putative 3TM holin, Phage_holin_3	Phage_holin_3_7
UHGV-0202915_37	PHROG	phrog_198	holin	lysis
UHGV-0202915_37	UniRef90	UniRef90_A0A0F6TUZ0	Membrane protein	NA
UHGV-0202915_37	eggNOG-mapper	1399774.JDWH01000016_gene3442	Putative phage holin	NA
UHGV-0202915_37	Pfam	PF16931	Putative phage holin	Phage_holin_8
UHGV-0202915_37	Structural annotation	PF16931	NA	NA
UHGV-0202915_41	PHROG	phrog_127	anti-termination protein Q-like	transcription regulation
UHGV-0202915_41	UniRef90	UniRef90_A0A7V7M992	Antitermination protein	NA
UHGV-0202915_41	eggNOG-mapper	1197719.A464_2031	Antitermination protein	NA
UHGV-0202915_41	Pfam	PF03589	Antitermination protein	Antiterm
UHGV-0202915_41	COG	COG0484	DnaJ-class molecular chaperone with C-terminal Zn finger domain	NA
UHGV-0202915_41	HAMAP	MF_04158	Antitermination protein Q [Q]	NA
UHGV-0202915_41	Structural annotation	PF03589, PF00684, MF_04158, TIGR02642	NA	NA
UHGV-0202915_42	PHROG	phrog_6204	NA	unknown function
UHGV-0202915_42	UniRef90	UniRef90_UPI0013F42BD3	helix-turn-helix domain-containing protein	NA
UHGV-0202915_42	eggNOG-mapper	1005994.GTGU_01787	NA	NA
UHGV-0202915_42	AcrCatalog	cluster_723	NA	NA
UHGV-0202915_43	PHROG	phrog_510	DNA primase	DNA, RNA and nucleotide metabolism
UHGV-0202915_43	UniRef90	UniRef90_A0A8E6MHC4	Toprim domain-containing protein	NA
UHGV-0202915_43	eggNOG-mapper	1197719.A464_2033	Zinc-binding domain of primase-helicase	NA
UHGV-0202915_43	Pfam	PF08273	Zinc-binding domain of primase-helicase	Prim_Zn_Ribbon
UHGV-0202915_43	Pfam	PF13362	Toprim domain	Toprim_3
UHGV-0202915_43	COG	COG4643	NA	NA
UHGV-0202915_43	Structural annotation	PF13362, PF01807, MF_00974, TIGR01391, COG4643	NA	NA
UHGV-0202915_44	KOfam	K19789	radD; DNA repair protein RadD	NA
UHGV-0202915_44	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-0202915_44	UniRef90	UniRef90_A0A2W0FZR9	ATP-dependent helicase	NA
UHGV-0202915_44	eggNOG-mapper	1197719.A464_2034	helicase	NA
UHGV-0202915_44	PADLOC	mREase_IV_00005	Type IV methyl-directed restriction enzyme	RM
UHGV-0202915_44	Pfam	PF04851	Type III restriction enzyme, res subunit	ResIII
UHGV-0202915_44	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-0202915_44	COG	COG1061	Superfamily II DNA or RNA helicase	NA
UHGV-0202915_44	Structural annotation	PF07652, PF00271, MF_01489, TIGR04095, COG1061	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0202915	Yes	33,463 bps	52.19%	73.60%	0.9699
UHGV-0381229	No	25,379 bps	52.26%	56.23%	0.9777