vOTU-030705

Overview

vOTU representative UHGV-0019260

No. of genomes 7

Genome length 34,030 bps

Completeness 51.43% (medium-quality)

Host Clostridium P ventriculi

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-030705
Number of genomes	7
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00248 › vOTU-030705
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Clostridiales › Clostridiaceae › Clostridium P › Clostridium P ventriculi
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0019260
BioSample	NA
Genome length	34,030 bps
CheckV completeness	51.43% (medium-quality)
CheckV contamination	0.00%
CDS count	55
CDS density	94.17%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0019260_1	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0019260_3	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0019260_3	PHROG	phrog_1595	terminase small subunit	head and packaging
UHGV-0019260_3	UniRef90	UniRef90_G5K2B4	Terminase small subunit	NA
UHGV-0019260_3	eggNOG-mapper	764299.STRIC_2523	DNA packaging	NA
UHGV-0019260_3	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0019260_3	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0019260_3	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0019260_4	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0019260_4	PHROG	phrog_5653	terminase large subunit	head and packaging
UHGV-0019260_4	UniRef90	UniRef90_UPI0018A9D90A	PBSX family phage terminase large subunit	NA
UHGV-0019260_4	eggNOG-mapper	999411.HMPREF1092_00914	phage terminase, large subunit, PBSX family	NA
UHGV-0019260_4	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0019260_4	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0019260_4	COG	COG1783	Phage terminase large subunit	NA
UHGV-0019260_4	Structural annotation	PF04466, PF20454, MF_04148, TIGR01547, COG1783	NA	NA
UHGV-0019260_5	PHROG	phrog_64	portal protein	head and packaging
UHGV-0019260_5	UniRef90	UniRef90_UPI0018AB2F79	phage portal protein	NA
UHGV-0019260_5	eggNOG-mapper	999411.HMPREF1092_00915	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0019260_5	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0019260_5	Structural annotation	PF05133, MF_04120, TIGR01538, COG5511	NA	NA
UHGV-0019260_6	PHROG	phrog_115	minor head protein	head and packaging
UHGV-0019260_6	UniRef90	UniRef90_UPI0018AB3A44	minor capsid protein	NA
UHGV-0019260_6	eggNOG-mapper	999411.HMPREF1092_00916	cell adhesion	NA
UHGV-0019260_6	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0019260_6	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0019260_6	COG	COG2369	NA	NA
UHGV-0019260_7	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0019260_7	UniRef90	UniRef90_UPI0018A9B2D8	phage scaffolding protein	NA
UHGV-0019260_7	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0019260_8	PHROG	phrog_267	major head protein	head and packaging
UHGV-0019260_8	UniRef90	UniRef90_UPI0003665147	phage capsid protein	NA
UHGV-0019260_8	eggNOG-mapper	1445809.A0A0A7AQF5_9CAUD	viral capsid	NA
UHGV-0019260_9	PHROG	phrog_132	head-tail adaptor	connector
UHGV-0019260_9	UniRef90	UniRef90_UPI0018AC52BD	phage head-tail connector protein	NA
UHGV-0019260_9	eggNOG-mapper	1540257.JQMW01000009_gene3373	Phage gp6-like head-tail connector protein	NA
UHGV-0019260_9	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0019260_9	Structural annotation	PF05135, TIGR01560	NA	NA
UHGV-0019260_11	UniRef90	UniRef90_UPI0006D8584C	HK97 gp10 family phage protein	NA
UHGV-0019260_11	eggNOG-mapper	999411.HMPREF1092_00921	NA	NA
UHGV-0019260_11	Structural annotation	PF05069, TIGR01725, COG5005	NA	NA
UHGV-0019260_13	eggNOG-mapper	683837.lse_1603	NA	NA
UHGV-0019260_14	UniRef90	UniRef90_UPI001922BDE8	NA	NA
UHGV-0019260_14	Structural annotation	PF11195	NA	NA
UHGV-0019260_15	KOfam	K20697	GNBP1; gram-negative bacteria-binding protein 1	NA
UHGV-0019260_15	UniRef90	UniRef90_UPI0018AA67D1	family 16 glycosylhydrolase	NA
UHGV-0019260_15	eggNOG-mapper	573061.Clocel_2716	family 16	NA
UHGV-0019260_15	Pfam	PF00722	Glycosyl hydrolases family 16	Glyco_hydro_16
UHGV-0019260_15	Pfam	PF02018	Carbohydrate binding domain	CBM_4_9
UHGV-0019260_15	COG	COG2273	Beta-glucanase, GH16 family	NA
UHGV-0019260_18	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-0019260_19	UniRef90	UniRef90_UPI0018A9DFD8	phage tail family protein	NA
UHGV-0019260_19	eggNOG-mapper	999411.HMPREF1092_00927	Phage tail protein	NA
UHGV-0019260_19	COG	COG4722	Phage-related protein YomH	NA
UHGV-0019260_19	Structural annotation	PF20753, PF16774, TIGR01633, COG4722	NA	NA
UHGV-0019260_20	PHROG	phrog_538	minor tail protein	tail
UHGV-0019260_20	UniRef90	UniRef90_UPI0018AB4B07	siphovirus ReqiPepy6 Gp37-like family protein	NA
UHGV-0019260_20	eggNOG-mapper	999411.HMPREF1092_00928	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0019260_20	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0019260_20	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-0019260_21	PHROG	phrog_1220	head protein	head and packaging
UHGV-0019260_21	eggNOG-mapper	1499680.CCFE01000031_gene3747	NA	NA
UHGV-0019260_23	KOfam	K21471	cwlO; peptidoglycan DL-endopeptidase CwlO [EC:3.4.-.-]	NA
UHGV-0019260_23	PHROG	phrog_329	minor tail protein	tail
UHGV-0019260_23	UniRef90	UniRef90_UPI0018AAA542	NlpC/P60 family protein	NA
UHGV-0019260_23	eggNOG-mapper	999411.HMPREF1092_00933	lysozyme	NA
UHGV-0019260_23	Pfam	PF00877	NlpC/P60 family	NLPC_P60
UHGV-0019260_23	Pfam	PF01476	LysM domain	LysM
UHGV-0019260_23	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0019260_24	Pfam	PF09693	Phage uncharacterised protein (Phage_XkdX)	Phage_XkdX
UHGV-0019260_24	NCBIFam	TIGR01669.1	XkdX family protein	NA
UHGV-0019260_25	UniRef90	UniRef90_UPI000D94990B	hemolysin XhlA family protein	NA
UHGV-0019260_25	eggNOG-mapper	536232.CLM_2633	NA	NA
UHGV-0019260_25	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0019260_26	KOfam	K01185	E3.2.1.17; lysozyme [EC:3.2.1.17]	NA
UHGV-0019260_26	PHROG	phrog_7	endolysin	lysis
UHGV-0019260_26	UniRef90	UniRef90_UPI0018AB6145	SH3 domain-containing protein	NA
UHGV-0019260_26	eggNOG-mapper	999411.HMPREF1092_00933	lysozyme	NA
UHGV-0019260_26	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0019260_26	Pfam	PF00959	Phage lysozyme	Phage_lysozyme
UHGV-0019260_26	COG	COG3772	Phage-related lysozyme (muramidase), GH24 family	NA
UHGV-0019260_29	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0019260_29	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0019260_29	UniRef90	UniRef90_UPI000D82116E	helix-turn-helix domain-containing protein	NA
UHGV-0019260_29	eggNOG-mapper	717605.Theco_3196	transcriptional regulator	NA
UHGV-0019260_29	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0019260_29	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019260_29	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0019260_33	KOfam	K16881	K16881; mannose-1-phosphate guanylyltransferase / phosphomannomutase [EC:2.7.7.13 5.4.2.8]	NA
UHGV-0019260_33	PHROG	phrog_7964	NA	unknown function
UHGV-0019260_33	eggNOG-mapper	1094553.MCS_00034	Homologous to orf229 gp Streptococcus thermophilus bacteriophage Sfi19 gi 9632919 ref NP_049948.1	NA
UHGV-0019260_33	Pfam	PF00132	Bacterial transferase hexapeptide (six repeats)	Hexapep
UHGV-0019260_33	COG	COG1044	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA
UHGV-0019260_33	Structural annotation	MF_01691, NF040481	NA	NA
UHGV-0019260_36	PHROG	phrog_10701	NA	unknown function
UHGV-0019260_37	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0019260_37	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0019260_37	UniRef90	UniRef90_UPI0018AAEAA0	ATP-binding protein	NA
UHGV-0019260_37	eggNOG-mapper	1391647.AVSV01000022_gene2532	PFAM IstB-like ATP binding protein	NA
UHGV-0019260_37	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0019260_37	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0019260_37	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0019260_38	PHROG	phrog_10469	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0019260_38	UniRef90	UniRef90_UPI0018A8EDC6	phage replisome organizer N-terminal domain-containing protein	NA
UHGV-0019260_38	eggNOG-mapper	632245.CLP_1613	N-terminal phage replisome organiser (Phage_rep_org_N)	NA
UHGV-0019260_38	Pfam	PF09681	N-terminal phage replisome organiser (Phage_rep_org_N)	Phage_rep_org_N
UHGV-0019260_38	NCBIFam	TIGR01714.1	phage replisome organizer, putative, N-terminal region	NA
UHGV-0019260_38	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0019260_39	PHROG	phrog_2324	Erf-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0019260_39	UniRef90	UniRef90_A0A336Q681	Essential recombination function protein	NA
UHGV-0019260_39	eggNOG-mapper	1415774.U728_771	ERF superfamily	NA
UHGV-0019260_39	Pfam	PF04404	ERF superfamily	ERF
UHGV-0019260_39	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-0019260_40	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-0019260_40	UniRef90	UniRef90_A0A2I4N716	Siphovirus Gp157 family protein	NA
UHGV-0019260_40	eggNOG-mapper	536232.CLM_2568	Siphovirus Gp157	NA
UHGV-0019260_40	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-0019260_40	Structural annotation	PF05565, NF002139	NA	NA
UHGV-0019260_41	PHROG	phrog_10625	NA	unknown function
UHGV-0019260_41	Structural annotation	PF14634	NA	NA
UHGV-0019260_45	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0019260_45	PHROG	phrog_130	anti-repressor Ant	transcription regulation
UHGV-0019260_45	UniRef90	UniRef90_UPI000D9151AB	phage antirepressor KilAC domain-containing protein	NA
UHGV-0019260_45	eggNOG-mapper	1582149.A0A0A8WIE3_9CAUD	DNA binding	NA
UHGV-0019260_45	Pfam	PF02498	BRO family, N-terminal domain	Bro-N
UHGV-0019260_45	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0019260_45	Structural annotation	PF03374, PF02498, TIGR02681, COG3617, COG3645	NA	NA
UHGV-0019260_46	KOfam	K07729	K07729; putative transcriptional regulator	NA
UHGV-0019260_46	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-0019260_46	UniRef90	UniRef90_A0A7T0D4S4	Helix-turn-helix transcriptional regulator	NA
UHGV-0019260_46	eggNOG-mapper	999411.HMPREF1092_00564	Helix-turn-helix domain	NA
UHGV-0019260_46	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0019260_46	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0019260_46	COG	COG1476	DNA-binding transcriptional regulator, XRE-family HTH domain	NA
UHGV-0019260_46	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-0019260_48	PHROG	phrog_373	anti-repressor	transcription regulation
UHGV-0019260_48	UniRef90	UniRef90_UPI000D9B3F85	Rha family transcriptional regulator	NA
UHGV-0019260_48	eggNOG-mapper	536227.CcarbDRAFT_1704	Phage regulatory protein	NA
UHGV-0019260_48	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0019260_48	COG	COG3646	Phage regulatory protein Rha	NA
UHGV-0019260_48	Structural annotation	PF09669, PF10552, TIGR02681, COG3646	NA	NA
UHGV-0019260_49	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-0019260_49	Structural annotation	PF12441, NF041793, COG4877	NA	NA
UHGV-0019260_50	PHROG	phrog_582	Arc-like repressor	transcription regulation
UHGV-0019260_50	UniRef90	UniRef90_A0A2T0B1I5	Arc-like DNA binding domain protein	NA
UHGV-0019260_50	eggNOG-mapper	1151292.QEW_4373	Arc-like DNA binding domain	NA
UHGV-0019260_50	Pfam	PF03869	Arc-like DNA binding domain	Arc
UHGV-0019260_50	Structural annotation	PF03869, NF008671, COG4877	NA	NA
UHGV-0019260_51	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-0019260_51	PHROG	phrog_8048	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0019260_51	UniRef90	UniRef90_UPI000D9F3488	HNH endonuclease	NA
UHGV-0019260_51	eggNOG-mapper	1476973.JMMB01000006_gene3329	NA	NA
UHGV-0019260_52	UniRef90	UniRef90_UPI000D9C143F	SH3 domain-containing protein	NA
UHGV-0019260_52	Pfam	PF08239	Bacterial SH3 domain	SH3_3
UHGV-0019260_53	PHROG	phrog_5763	NA	unknown function
UHGV-0019260_53	eggNOG-mapper	1235800.C819_02269	NA	NA
UHGV-0019260_53	Structural annotation	NF011158	NA	NA
UHGV-0019260_54	PHROG	phrog_1281	NA	unknown function
UHGV-0019260_54	UniRef90	UniRef90_UPI00073E3303	NA	NA
UHGV-0019260_54	eggNOG-mapper	1123263.AUKY01000111_gene1090	NA	NA
UHGV-0019260_54	Pfam	PF13274	Antitoxin SocA-like, Panacea domain	SocA_Panacea
UHGV-0019260_54	COG	COG3600	NA	NA
UHGV-0019260_54	Structural annotation	PF13274, COG3600	NA	NA
UHGV-0019260_55	PHROG	phrog_2172	NA	unknown function
UHGV-0019260_55	UniRef90	UniRef90_UPI0018AA1518	replication initiation protein	NA
UHGV-0019260_55	eggNOG-mapper	1292035.H476_3622	Initiator Replication protein	NA
UHGV-0019260_55	Pfam	PF01051	Initiator Replication protein, WH1	Rep3_N
UHGV-0019260_55	Pfam	PF21205	Initiator Rep protein, WH2	Rep3_C
UHGV-0019260_55	COG	COG5527	Protein involved in initiation of plasmid replication	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0019260	Yes	34,030 bps	31.00%	51.43%	0.9753
UHGV-0018814	No	34,030 bps	31.00%	51.41%	0.9756
UHGV-0019003	No	34,030 bps	31.00%	51.41%	0.9756
UHGV-0021268	No	34,030 bps	31.00%	51.41%	0.9757
UHGV-0024227	No	34,030 bps	31.00%	51.41%	0.9757
UHGV-0023812	No	33,347 bps	31.12%	50.28%	0.9767
UHGV-0217101	No	29,354 bps	31.08%	43.45%	0.9772