vOTU-031494

Overview

No. of genomes 2

Genome length 21,991 bps

Completeness 63.51% (medium-quality)

Host Lactococcus lactis

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-031494
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00011 › vOTU-031494
Host taxonomy	Bacteria › Firmicutes › Bacilli › Lactobacillales › Streptococcaceae › Lactococcus › Lactococcus lactis
Host range breadth	Species
Host prediction method	PHIST
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-0002997
BioSample	NA
Genome length	21,991 bps
CheckV completeness	63.51% (medium-quality)
CheckV contamination	0.00%
CDS count	32
CDS density	94.73%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0002997_1	KOfam	K02245	comGC; competence protein ComGC	NA
UHGV-0002997_1	UniRef90	UniRef90_A0A0V8EHS0	Late competence protein ComGC access of DNA to ComEA	NA
UHGV-0002997_1	eggNOG-mapper	272623.L0315	Prokaryotic N-terminal methylation motif	NA
UHGV-0002997_1	NCBIFam	NF040999.1	competence type IV pilus major pilin ComGC	NA
UHGV-0002997_1	COG	COG4537	Competence protein ComGC	NA
UHGV-0002997_1	Structural annotation	NF040999, COG4537	NA	NA
UHGV-0002997_2	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-0002997_2	PHROG	phrog_670	endolysin	lysis
UHGV-0002997_2	UniRef90	UniRef90_UPI0018AB2573	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-0002997_2	eggNOG-mapper	641487.C3U2S5_9CAUD	peptidoglycan catabolic process	NA
UHGV-0002997_2	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-0002997_2	Structural annotation	PF01510, COG5632	NA	NA
UHGV-0002997_3	PHROG	phrog_13973	NA	unknown function
UHGV-0002997_3	UniRef90	UniRef90_A0A0V8CZD2	NA	NA
UHGV-0002997_4	PHROG	phrog_443	holin	lysis
UHGV-0002997_4	UniRef90	UniRef90_A0A2C1C081	Holin	NA
UHGV-0002997_4	eggNOG-mapper	43685.HOLI_BPR1T	Pfam:Phage_r1t_holin	NA
UHGV-0002997_4	Pfam	PF16945	Putative lactococcus lactis phage r1t holin	Phage_r1t_holin
UHGV-0002997_5	PHROG	phrog_689	holin	lysis
UHGV-0002997_5	UniRef90	UniRef90_Q9AZR4	Orf58	NA
UHGV-0002997_5	eggNOG-mapper	272623.L18473	EVIDENCE BY HOMOLOGY BIO14.03 Phage related functions and prophages	NA
UHGV-0002997_5	Pfam	PF10779	Haemolysin XhlA	XhlA
UHGV-0002997_6	PHROG	phrog_10512	virion structural protein	head and packaging
UHGV-0002997_6	UniRef90	UniRef90_UPI001914039F	BppU family phage baseplate upper protein	NA
UHGV-0002997_6	eggNOG-mapper	1231377.C426_0890	NA	NA
UHGV-0002997_6	Pfam	PF10651	BppU N-terminal domain	BppU_N
UHGV-0002997_6	Structural annotation	PF10651	NA	NA
UHGV-0002997_7	PHROG	phrog_1067	minor head protein	head and packaging
UHGV-0002997_7	UniRef90	UniRef90_A0A0V8D6H1	Peptidase S74 domain-containing protein	NA
UHGV-0002997_7	eggNOG-mapper	1231377.C426_0891	Phage minor structural protein	NA
UHGV-0002997_7	Pfam	PF18994	Prophage endopeptidase tail N-terminal domain	Prophage_tailD1
UHGV-0002997_7	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-0002997_7	NCBIFam	TIGR01665.1	phage tail spike protein	NA
UHGV-0002997_7	COG	COG4926	Phage-related protein	NA
UHGV-0002997_8	PHROG	phrog_33	distal tail protein Dit	tail
UHGV-0002997_8	UniRef90	UniRef90_A0A0V8CYX8	Phage-related protein	NA
UHGV-0002997_8	eggNOG-mapper	1231377.C426_0892	phage tail	NA
UHGV-0002997_8	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-0002997_8	COG	COG4722	Phage-related protein YomH	NA
UHGV-0002997_8	Structural annotation	PF20195, TIGR01633, COG4722	NA	NA
UHGV-0002997_9	PHROG	phrog_24198	NA	unknown function
UHGV-0002997_9	UniRef90	UniRef90_A0A8I2HC46	Phage tail tape measure protein	NA
UHGV-0002997_9	eggNOG-mapper	374526.A5GYM8_9CAUD	NA	NA
UHGV-0002997_10	PHROG	phrog_706	NA	unknown function
UHGV-0002997_10	UniRef90	UniRef90_A0A0V8EKB6	NA	NA
UHGV-0002997_10	eggNOG-mapper	374526.A5GYM7_9CAUD	Bacteriophage Gp15 protein	NA
UHGV-0002997_10	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-0002997_10	Structural annotation	PF06854	NA	NA
UHGV-0002997_11	PHROG	phrog_1061	NA	unknown function
UHGV-0002997_11	UniRef90	UniRef90_A0A0V8CZ27	NA	NA
UHGV-0002997_12	PHROG	phrog_820	major tail protein	tail
UHGV-0002997_12	UniRef90	UniRef90_A0A0V8EJW7	Phage major tail shaft protein	NA
UHGV-0002997_12	eggNOG-mapper	374526.A5GYM5_9CAUD	NA	NA
UHGV-0002997_12	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-0002997_13	PHROG	phrog_913	minor head protein	head and packaging
UHGV-0002997_13	UniRef90	UniRef90_A0A0V8CZP2	NA	NA
UHGV-0002997_13	Pfam	PF12691	Bacteriophage minor capsid protein	Minor_capsid_3
UHGV-0002997_14	PHROG	phrog_556	minor head protein	head and packaging
UHGV-0002997_14	UniRef90	UniRef90_A0A0V8CYW8	NA	NA
UHGV-0002997_14	eggNOG-mapper	1134413.ANNK01000120_gene2022	Minor capsid protein	NA
UHGV-0002997_14	Structural annotation	PF11114	NA	NA
UHGV-0002997_15	PHROG	phrog_793	head-tail adaptor	connector
UHGV-0002997_15	UniRef90	UniRef90_A0A0V8EJR5	NA	NA
UHGV-0002997_15	eggNOG-mapper	374526.A5GYM2_9CAUD	Minor capsid protein	NA
UHGV-0002997_15	Pfam	PF10665	Minor capsid protein	Minor_capsid_1
UHGV-0002997_15	Structural annotation	PF10665, TIGR01563, COG5614	NA	NA
UHGV-0002997_16	PHROG	phrog_541	head-tail adaptor	connector
UHGV-0002997_16	UniRef90	UniRef90_A0A0V8EJU1	Protein gp8	NA
UHGV-0002997_16	eggNOG-mapper	374526.A5GYM1_9CAUD	NA	NA
UHGV-0002997_17	KOfam	K20846	cgkA; kappa-carrageenase [EC:3.2.1.83]	NA
UHGV-0002997_17	PHROG	phrog_215	structural protein with Ig domain	head and packaging
UHGV-0002997_17	UniRef90	UniRef90_G6FD69	BIG2 domain-containing protein	NA
UHGV-0002997_17	eggNOG-mapper	1231377.C426_2212	domain, Protein	NA
UHGV-0002997_17	Pfam	PF02368	Bacterial Ig-like domain (group 2)	Big_2
UHGV-0002997_17	COG	COG5492	NA	NA
UHGV-0002997_17	Structural annotation	PF02368	NA	NA
UHGV-0002997_18	PHROG	phrog_1623	virion structural protein	head and packaging
UHGV-0002997_18	UniRef90	UniRef90_A0A0V8EJR0	Phage capsid and scaffold	NA
UHGV-0002997_18	eggNOG-mapper	1231377.C426_2211	domain, Protein	NA
UHGV-0002997_18	COG	COG5492	NA	NA
UHGV-0002997_18	Structural annotation	PF05125, MF_04119, TIGR01551, COG4653	NA	NA
UHGV-0002997_19	PHROG	phrog_3017	head maturation protease	head and packaging
UHGV-0002997_19	UniRef90	UniRef90_A5GYR6	Peptidase_S78_2 domain-containing protein	NA
UHGV-0002997_19	eggNOG-mapper	374526.A5GYL8_9CAUD	Pfam:Peptidase_S78_2	NA
UHGV-0002997_19	Pfam	PF14550	Putative phage serine protease XkdF	Peptidase_S78_2
UHGV-0002997_19	Structural annotation	PF14550	NA	NA
UHGV-0002997_20	PHROG	phrog_2468	head morphogenesis	head and packaging
UHGV-0002997_20	UniRef90	UniRef90_A5GYR5	Phage_Mu_F domain-containing protein	NA
UHGV-0002997_20	eggNOG-mapper	1231377.C426_2209	Phage Mu protein F like protein	NA
UHGV-0002997_20	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0002997_20	COG	COG2369	NA	NA
UHGV-0002997_20	Structural annotation	PF06152, TIGR01641	NA	NA
UHGV-0002997_21	PHROG	phrog_12	portal protein	head and packaging
UHGV-0002997_21	UniRef90	UniRef90_A0A1B1IM25	Putative portal protein	NA
UHGV-0002997_21	eggNOG-mapper	374526.A5GYL6_9CAUD	Phage portal protein	NA
UHGV-0002997_21	Pfam	PF04860	Phage portal protein	Phage_portal
UHGV-0002997_21	NCBIFam	TIGR01540.1	phage portal protein	NA
UHGV-0002997_21	Structural annotation	PF04860, MF_04120, TIGR01540, COG5518	NA	NA
UHGV-0002997_22	PHROG	phrog_38	terminase large subunit	head and packaging
UHGV-0002997_22	UniRef90	UniRef90_G6FD64	Terminase_6C domain-containing protein	NA
UHGV-0002997_22	eggNOG-mapper	374526.A5GYP8_9CAUD	intein-mediated protein splicing	NA
UHGV-0002997_22	Pfam	PF03237	Terminase large subunit, T4likevirus-type, N-terminal	Terminase_6N
UHGV-0002997_22	Pfam	PF17289	Terminase RNaseH-like domain	Terminase_6C
UHGV-0002997_22	NCBIFam	TIGR01630.1	phage terminase large subunit	NA
UHGV-0002997_22	Structural annotation	PF17289, PF05876, MF_04147, NF033889, COG5362, COG5410	NA	NA
UHGV-0002997_23	PHROG	phrog_309	terminase small subunit	head and packaging
UHGV-0002997_23	UniRef90	UniRef90_Q02ZF6	Phage terminase, small subunit	NA
UHGV-0002997_23	eggNOG-mapper	374526.A5GYP7_9CAUD	endonuclease activity	NA
UHGV-0002997_23	Structural annotation	PF07141	NA	NA
UHGV-0002997_24	PHROG	phrog_2198	Alt-like transcription activator	transcription regulation
UHGV-0002997_24	UniRef90	UniRef90_A0A7T3F5U5	NA	NA
UHGV-0002997_24	eggNOG-mapper	1229517.AMFD01000023_gene1326	EVIDENCE BY HOMOLOGY BIO14.03 Phage related functions and prophages	NA
UHGV-0002997_24	Pfam	PF05263	NA	DUF722
UHGV-0002997_24	Structural annotation	PF05263, MF_00674, TIGR01636, COG1595	NA	NA
UHGV-0002997_25	PHROG	phrog_4298	NA	unknown function
UHGV-0002997_26	PHROG	phrog_2670	NA	unknown function
UHGV-0002997_26	UniRef90	UniRef90_Q9AZT9	Orf33	NA
UHGV-0002997_26	Pfam	PF07874	NA	DUF1660
UHGV-0002997_26	Structural annotation	NF041603	NA	NA
UHGV-0002997_27	PHROG	phrog_21183	NA	unknown function
UHGV-0002997_27	UniRef90	UniRef90_A0A0B8QIA3	Transcriptional regulator/sugar kinase	NA
UHGV-0002997_28	PHROG	phrog_20711	NA	unknown function
UHGV-0002997_28	UniRef90	UniRef90_A0A084AA90	Putative phage related protein	NA
UHGV-0002997_28	eggNOG-mapper	272623.L42207	NA	NA
UHGV-0002997_28	Pfam	PF06600	NA	DUF1140
UHGV-0002997_28	Structural annotation	PF06600	NA	NA
UHGV-0002997_29	PHROG	phrog_3808	NA	unknown function
UHGV-0002997_29	UniRef90	UniRef90_D2BQD6	NA	NA
UHGV-0002997_31	PHROG	phrog_22202	transcription factor	transcription regulation
UHGV-0002997_31	UniRef90	UniRef90_A0A0V8ECN6	Prophage pi3 protein 34	NA
UHGV-0002997_32	PHROG	phrog_10825	NA	unknown function
UHGV-0002997_32	UniRef90	UniRef90_A0A649V1B0	Mismatch repair ATPase	NA
UHGV-0002997_32	eggNOG-mapper	201846.B5SP09_9CAUD	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0002997	Yes	21,991 bps	36.74%	63.51%	0.9792
UHGV-0002281	No	20,534 bps	36.84%	59.30%	0.9785