vOTU-034365

Overview

vOTU representative UHGV-1401996

No. of genomes 3

Genome length 37,301 bps

Completeness 83.06% (medium-quality)

Host Agathobaculum butyriciproducens

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-034365
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00004 › vSUBFAM-00118 › vGENUS-00713 › vOTU-034365
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Oscillospirales › Butyricicoccaceae › Agathobaculum › Agathobaculum butyriciproducens
Host range breadth	Species
Host prediction method	CRISPR
Lifestyle	Lytic (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1401996
BioSample	NA
Genome length	37,301 bps
CheckV completeness	83.06% (medium-quality)
CheckV contamination	0.00%
CDS count	64
CDS density	92.10%
tRNA count	1
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1401996_1	eggNOG-mapper	1378168.N510_03079	NA	NA
UHGV-1401996_2	eggNOG-mapper	1408437.JNJN01000043_gene802	NA	NA
UHGV-1401996_3	PHROG	phrog_16490	NA	unknown function
UHGV-1401996_3	eggNOG-mapper	1408437.JNJN01000043_gene803	NA	NA
UHGV-1401996_4	eggNOG-mapper	476272.RUMHYD_01953	NA	NA
UHGV-1401996_5	eggNOG-mapper	1408437.JNJN01000043_gene805	NA	NA
UHGV-1401996_7	UniRef90	UniRef90_UPI0004E194C7	LuxR C-terminal-related transcriptional regulator	NA
UHGV-1401996_8	KOfam	K01447	xlyAB; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-1401996_8	PHROG	phrog_670	endolysin	lysis
UHGV-1401996_8	UniRef90	UniRef90_A0A2V2FIF5	N-acetylmuramoyl-L-alanine amidase	NA
UHGV-1401996_8	eggNOG-mapper	1408437.JNJN01000008_gene890	Ami_2	NA
UHGV-1401996_8	Pfam	PF01510	N-acetylmuramoyl-L-alanine amidase	Amidase_2
UHGV-1401996_8	COG	COG5632	N-acetylmuramoyl-L-alanine amidase CwlA	NA
UHGV-1401996_8	Structural annotation	PF01510, MF_04111, NF008758, COG5632	NA	NA
UHGV-1401996_9	PHROG	phrog_199	holin	lysis
UHGV-1401996_9	UniRef90	UniRef90_A0A3E2XXQ8	Holin	NA
UHGV-1401996_9	eggNOG-mapper	1121344.JHZO01000003_gene684	toxin secretion phage lysis holin	NA
UHGV-1401996_9	Pfam	PF05105	Bacteriophage holin family	Phage_holin_4_1
UHGV-1401996_9	NCBIFam	TIGR01593.1	toxin secretion/phage lysis holin	NA
UHGV-1401996_9	COG	COG4824	Phage-related holin (Lysis protein)	NA
UHGV-1401996_9	Structural annotation	PF05105, TIGR01593, COG4824	NA	NA
UHGV-1401996_13	Structural annotation	PF16408, NF033510	NA	NA
UHGV-1401996_14	PHROG	phrog_10898	NA	unknown function
UHGV-1401996_14	UniRef90	UniRef90_A0A7U3NJT3	Putative Ig-like domain-containing protein	NA
UHGV-1401996_14	eggNOG-mapper	717606.PaecuDRAFT_2136	S-layer homology domain	NA
UHGV-1401996_14	COG	COG1520	Outer membrane protein assembly factor BamB, contains PQQ-like beta-propeller repeat	NA
UHGV-1401996_14	Structural annotation	PF19081, PF15418, MF_01905, NF032891, COG3291	NA	NA
UHGV-1401996_15	Structural annotation	PF10651, COG5456	NA	NA
UHGV-1401996_17	PHROG	phrog_32744	NA	unknown function
UHGV-1401996_17	eggNOG-mapper	1120998.AUFC01000030_gene2247	NA	NA
UHGV-1401996_17	Structural annotation	PF14594, PF21722, NF033848, COG4379	NA	NA
UHGV-1401996_18	PHROG	phrog_1194	NA	unknown function
UHGV-1401996_18	eggNOG-mapper	1120998.AUFC01000030_gene2246	NA	NA
UHGV-1401996_18	Structural annotation	PF20458, TIGR01633, COG3499	NA	NA
UHGV-1401996_19	KOfam	K10398	KIF11, EG5; kinesin family member 11	NA
UHGV-1401996_19	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1401996_19	UniRef90	UniRef90_A0A1C5N801	ATPase involved in DNA repair	NA
UHGV-1401996_19	eggNOG-mapper	1158612.I580_01921	SLT domain	NA
UHGV-1401996_19	COG	COG1511	NA	NA
UHGV-1401996_20	PHROG	phrog_706	NA	unknown function
UHGV-1401996_20	UniRef90	UniRef90_UPI00164ABC94	Gp15 family bacteriophage protein	NA
UHGV-1401996_20	eggNOG-mapper	1540257.JQMW01000013_gene734	Bacteriophage Gp15 protein	NA
UHGV-1401996_20	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1401996_20	Structural annotation	PF06854	NA	NA
UHGV-1401996_21	PHROG	phrog_11299	NA	unknown function
UHGV-1401996_21	eggNOG-mapper	1235790.C805_00083	NA	NA
UHGV-1401996_21	Structural annotation	PF10666	NA	NA
UHGV-1401996_22	PHROG	phrog_3099	NA	unknown function
UHGV-1401996_22	eggNOG-mapper	645991.Sgly_0346	NA	NA
UHGV-1401996_22	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1401996_23	PHROG	phrog_3266	tail completion	connector
UHGV-1401996_23	eggNOG-mapper	1232443.BAIA02000078_gene24	NA	NA
UHGV-1401996_23	Structural annotation	PF12691	NA	NA
UHGV-1401996_24	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1401996_24	UniRef90	UniRef90_UPI0006C7F62A	minor capsid protein	NA
UHGV-1401996_24	eggNOG-mapper	1226322.HMPREF1545_00054	Minor capsid protein	NA
UHGV-1401996_24	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1401996_24	Structural annotation	PF11114	NA	NA
UHGV-1401996_25	PHROG	phrog_3366	NA	unknown function
UHGV-1401996_25	eggNOG-mapper	1120746.CCNL01000014_gene2099	NA	NA
UHGV-1401996_25	Pfam	PF20536	NA	DUF6751
UHGV-1401996_25	Structural annotation	PF20536, COG5437	NA	NA
UHGV-1401996_26	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1401996_27	PHROG	phrog_10	major head protein	head and packaging
UHGV-1401996_27	UniRef90	UniRef90_A0A2U1BEF2	HK97 family phage major capsid protein	NA
UHGV-1401996_27	eggNOG-mapper	1226322.HMPREF1545_00050	Phage capsid family	NA
UHGV-1401996_27	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1401996_27	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1401996_27	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1401996_27	Structural annotation	PF05065, PF13620, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1401996_28	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1401996_28	eggNOG-mapper	1226322.HMPREF1545_00049	NA	NA
UHGV-1401996_29	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1401996_29	UniRef90	UniRef90_UPI0006C77A91	phage minor capsid protein	NA
UHGV-1401996_29	eggNOG-mapper	1226322.HMPREF1545_00046	Phage minor capsid protein 2	NA
UHGV-1401996_29	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1401996_29	COG	COG2369	NA	NA
UHGV-1401996_29	Structural annotation	PF06152	NA	NA
UHGV-1401996_30	PHROG	phrog_533	portal protein	head and packaging
UHGV-1401996_30	UniRef90	UniRef90_A0A1C5N775	Phage portal protein, putative, A118 family	NA
UHGV-1401996_30	eggNOG-mapper	1226322.HMPREF1545_00044	NA	NA
UHGV-1401996_30	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1401996_30	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1401996_31	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1401996_31	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-1401996_31	UniRef90	UniRef90_A0A2U1BEH4	PBSX family phage terminase large subunit	NA
UHGV-1401996_31	eggNOG-mapper	33035.JPJF01000106_gene3136	Terminase small subunit	NA
UHGV-1401996_31	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1401996_31	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-1401996_31	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1401996_31	COG	COG1783	Phage terminase large subunit	NA
UHGV-1401996_31	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1401996_34	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1401996_34	eggNOG-mapper	1027292.HMPREF9372_1273	NA	NA
UHGV-1401996_34	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1401996_34	Structural annotation	PF07374, TIGR01636	NA	NA
UHGV-1401996_36	PHROG	phrog_3886	NA	unknown function
UHGV-1401996_36	eggNOG-mapper	742740.HMPREF9474_02292	NA	NA
UHGV-1401996_37	KOfam	K03744	lemA; LemA protein	NA
UHGV-1401996_37	PHROG	phrog_1383	virion structural protein	head and packaging
UHGV-1401996_37	UniRef90	UniRef90_A0A417TP98	LemA family protein	NA
UHGV-1401996_37	eggNOG-mapper	742735.HMPREF9467_00879	LemA family	NA
UHGV-1401996_37	Pfam	PF04011	LemA family	LemA
UHGV-1401996_37	COG	COG1704	Magnetosome formation protein MamQ, lipoprotein antigen LemA family	NA
UHGV-1401996_37	Structural annotation	PF04011, NF040966, COG1704	NA	NA
UHGV-1401996_38	PHROG	phrog_25385	NA	unknown function
UHGV-1401996_38	eggNOG-mapper	748224.HMPREF9436_03077	NA	NA
UHGV-1401996_39	PHROG	phrog_7839	NA	unknown function
UHGV-1401996_39	eggNOG-mapper	665956.HMPREF1032_03091	NA	NA
UHGV-1401996_39	Structural annotation	PF08860	NA	NA
UHGV-1401996_40	PHROG	phrog_774	NA	unknown function
UHGV-1401996_40	UniRef90	UniRef90_U4KJB1	NA	NA
UHGV-1401996_40	eggNOG-mapper	1435051.BMOU_0242	Helix-turn-helix domain	NA
UHGV-1401996_40	COG	COG3311	DNA-binding transcriptional regulator AlpA	NA
UHGV-1401996_41	PHROG	phrog_419	NA	unknown function
UHGV-1401996_41	UniRef90	UniRef90_A0A3F3A3T2	Gp9	NA
UHGV-1401996_41	eggNOG-mapper	1282664.H354_06646	NA	NA
UHGV-1401996_41	Structural annotation	PF14083	NA	NA
UHGV-1401996_45	PHROG	phrog_599	Lar-like restriction alleviation protein	moron, auxiliary metabolic gene and host takeover
UHGV-1401996_45	Pfam	PF14354	Restriction alleviation protein Lar	Lar_restr_allev
UHGV-1401996_45	Structural annotation	PF14354, TIGR03655	NA	NA
UHGV-1401996_50	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1401996_50	UniRef90	UniRef90_UPI001A9B5584	DNA cytosine methyltransferase	NA
UHGV-1401996_50	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1401996_50	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1401996_51	PHROG	phrog_757	DNA methyltransferase	other
UHGV-1401996_51	UniRef90	UniRef90_A0A7J2R6L5	DNA cytosine methyltransferase (Fragment)	NA
UHGV-1401996_51	eggNOG-mapper	748224.HMPREF9436_03069	DNA (cytosine-5-)-methyltransferase activity	NA
UHGV-1401996_51	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1401996_52	KOfam	K24451	zim; modification methylase	NA
UHGV-1401996_52	PHROG	phrog_67	DNA methyltransferase	other
UHGV-1401996_52	UniRef90	UniRef90_A0A1M4M4T9	Methyltransferase	NA
UHGV-1401996_52	eggNOG-mapper	1120971.AUCA01000053_gene371	DNA methylase	NA
UHGV-1401996_52	PADLOC	MTase_II_00139	Type II methyltransferase	RM
UHGV-1401996_52	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1401996_52	COG	COG0863	DNA modification methylase	NA
UHGV-1401996_52	Structural annotation	PF01555, MF_01872, NF010253, COG0863	NA	NA
UHGV-1401996_53	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1401996_53	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1401996_53	UniRef90	UniRef90_A0A1M4M4U0	DNA methylase N-4/N-6 domain protein	NA
UHGV-1401996_53	eggNOG-mapper	592028.GCWU000321_01359	DEAD-like helicases superfamily	NA
UHGV-1401996_53	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1401996_53	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1401996_53	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1401996_53	Structural annotation	PF06862, MF_01821, NF003426, COG0553	NA	NA
UHGV-1401996_54	PHROG	phrog_1682	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-1401996_54	UniRef90	UniRef90_A0A417H6W1	RusA family crossover junction endodeoxyribonuclease	NA
UHGV-1401996_54	eggNOG-mapper	697281.Mahau_0558	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC	NA
UHGV-1401996_54	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-1401996_54	Structural annotation	PF19595, NF007305, COG4570	NA	NA
UHGV-1401996_55	PHROG	phrog_2514	DnaD-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-1401996_55	UniRef90	UniRef90_A0A6L5TYD7	DnaD domain protein	NA
UHGV-1401996_55	eggNOG-mapper	397291.C804_01603	DnaD domain protein	NA
UHGV-1401996_55	COG	COG3935	DNA replication protein DnaD	NA
UHGV-1401996_55	Structural annotation	PF10771, MF_01177, TIGR01610, COG0640	NA	NA
UHGV-1401996_56	KOfam	K03111	ssb; single-strand DNA-binding protein	NA
UHGV-1401996_56	PHROG	phrog_44	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-1401996_56	UniRef90	UniRef90_A0A417H728	Single-stranded DNA-binding protein	NA
UHGV-1401996_56	eggNOG-mapper	1408437.JNJN01000012_gene314	Single-stranded DNA-binding protein	NA
UHGV-1401996_56	Pfam	PF00436	Single-strand binding protein family	SSB
UHGV-1401996_56	NCBIFam	TIGR00621.2	single-stranded DNA-binding protein	NA
UHGV-1401996_56	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1401996_56	HAMAP	MF_00984	Single-stranded DNA-binding protein	NA
UHGV-1401996_56	Structural annotation	PF00436, MF_00984, NF005241, COG0629	NA	NA
UHGV-1401996_57	PHROG	phrog_20891	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1401996_57	UniRef90	UniRef90_A0A417H726	HNH endonuclease	NA
UHGV-1401996_57	eggNOG-mapper	521000.PROVRETT_05968	HNH endonuclease	NA
UHGV-1401996_57	Pfam	PF07460	NUMOD3 motif	NUMOD3
UHGV-1401996_57	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-1401996_57	Structural annotation	PF13392, PF13384, TIGR04381, COG2771	NA	NA
UHGV-1401996_58	KOfam	K07451	mcrA; 5-methylcytosine-specific restriction enzyme A [EC:3.1.21.-]	NA
UHGV-1401996_58	PHROG	phrog_7370	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1401996_58	UniRef90	UniRef90_A0A845MWL0	HNHc domain-containing protein	NA
UHGV-1401996_58	eggNOG-mapper	1232449.BAHV02000016_gene1841	HNH nucleases	NA
UHGV-1401996_58	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1401996_59	PHROG	phrog_72	NinB/ Orf homologous recombination mediator	DNA, RNA and nucleotide metabolism
UHGV-1401996_59	UniRef90	UniRef90_A0A8D9PDS2	NinB protein	NA
UHGV-1401996_59	eggNOG-mapper	445972.ANACOL_01825	NA	NA
UHGV-1401996_59	Structural annotation	PF05772, NF007281	NA	NA
UHGV-1401996_60	PHROG	phrog_21649	NA	unknown function
UHGV-1401996_60	UniRef90	UniRef90_A0A1C6CBK6	ERF superfamily	NA
UHGV-1401996_60	eggNOG-mapper	357809.Cphy_2988	ERF superfamily	NA
UHGV-1401996_60	Pfam	PF04404	ERF superfamily	ERF
UHGV-1401996_60	COG	COG0629	Single-stranded DNA-binding protein	NA
UHGV-1401996_60	Structural annotation	PF04404, TIGR00607, COG4712	NA	NA
UHGV-1401996_61	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-1401996_61	UniRef90	UniRef90_UPI00164A4E04	siphovirus Gp157 family protein	NA
UHGV-1401996_61	eggNOG-mapper	1226322.HMPREF1545_04074	Siphovirus Gp157	NA
UHGV-1401996_61	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-1401996_61	Structural annotation	PF05565, NF002139	NA	NA
UHGV-1401996_64	PHROG	phrog_27197	NA	unknown function
UHGV-1401996_64	eggNOG-mapper	394503.Ccel_3068	regulation of DNA-templated transcription, elongation	NA
UHGV-1401996_64	COG	COG5164	Transcription elongation factor SPT5	NA
UHGV-1401996_64	Structural annotation	NF007410	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1401996	Yes	37,301 bps	51.54%	83.06%	0.9825
UHGV-1540803	No	37,247 bps	51.45%	82.94%	0.9822
UHGV-1557108	No	22,032 bps	51.75%	49.85%	0.9821