vOTU-034366

Overview

vOTU representative UHGV-1402067

No. of genomes 2

Genome length 25,994 bps

Completeness 57.60% (medium-quality)

Host Unclassified

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-034366
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vSUBFAM-02295 › vOTU-034366
Host taxonomy
Host range breadth
Host prediction method
Lifestyle	Temperate (evidence: integrase)

Representative genome
Genome ID	UHGV-1402067
BioSample	SAMEA2466981
Genome length	25,994 bps
CheckV completeness	57.60% (medium-quality)
CheckV contamination	0.00%
CDS count	37
CDS density	86.38%
tRNA count	0
Integrase	Yes
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1402067_1	eggNOG-mapper	511680.BUTYVIB_00661	NA	NA
UHGV-1402067_1	COG	COG0756	dUTP pyrophosphatase (dUTPase)	NA
UHGV-1402067_3	KOfam	K01493	comEB; dCMP deaminase [EC:3.5.4.12]	NA
UHGV-1402067_3	PHROG	phrog_174	dCMP deaminase	DNA, RNA and nucleotide metabolism
UHGV-1402067_3	UniRef90	UniRef90_A0A1Q6KPY2	CMP/dCMP-type deaminase domain-containing protein	NA
UHGV-1402067_3	eggNOG-mapper	634498.mru_1286	deaminase	NA
UHGV-1402067_3	PADLOC	dCTPase	NA	NA
UHGV-1402067_3	Pfam	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region	dCMP_cyt_deam_1
UHGV-1402067_3	COG	COG2131	Deoxycytidylate deaminase	NA
UHGV-1402067_3	Structural annotation	PF00383, TIGR02571, COG2131	NA	NA
UHGV-1402067_4	PHROG	phrog_256	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1402067_4	UniRef90	UniRef90_UPI0009EE24FB	virulence-associated E family protein	NA
UHGV-1402067_4	eggNOG-mapper	1567012.A0A0A7RTG3_9VIRU	Virulence-associated protein E	NA
UHGV-1402067_4	Pfam	PF05272	Virulence-associated protein E-like domain	VapE-like_dom
UHGV-1402067_4	Structural annotation	PF05272, NF011296, NF040562, COG5545	NA	NA
UHGV-1402067_5	PHROG	phrog_93	endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1402067_5	UniRef90	UniRef90_A0A1Q6KPG7	VRR-NUC domain-containing protein	NA
UHGV-1402067_5	eggNOG-mapper	1120746.CCNL01000014_gene2090	VRR-NUC domain protein	NA
UHGV-1402067_5	Structural annotation	PF01974, MF_01490, NF011269	NA	NA
UHGV-1402067_6	KOfam	K14440	SMARCAL1, HARP; SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 [EC:5.6.2.-]	NA
UHGV-1402067_6	PHROG	phrog_62	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1402067_6	UniRef90	UniRef90_A0A1Q6KPK3	DEAD/DEAH box helicase	NA
UHGV-1402067_6	eggNOG-mapper	1209989.TepiRe1_2619	SNF2 family N-terminal domain	NA
UHGV-1402067_6	PADLOC	ZorD1_00007	SWI2/SNF2 helicase, Mrr-like nuclease	Zorya
UHGV-1402067_6	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1402067_6	Pfam	PF00271	Helicase conserved C-terminal domain	Helicase_C
UHGV-1402067_6	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1402067_6	Structural annotation	PF13872, PF16203, MF_01821, NF041790, COG0553	NA	NA
UHGV-1402067_7	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1402067_7	UniRef90	UniRef90_R6PSY9	Putative RNA polymerase sigma 28 subunit FliA/WhiG subfamily	NA
UHGV-1402067_7	eggNOG-mapper	1286171.EAL2_808p01600	sigma factor activity	NA
UHGV-1402067_7	Pfam	PF07374	NA	DUF1492
UHGV-1402067_7	COG	COG1191	DNA-directed RNA polymerase specialized sigma subunit	NA
UHGV-1402067_7	Structural annotation	PF04545, MF_00674, NF009180, COG1342	NA	NA
UHGV-1402067_8	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1402067_8	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-1402067_8	UniRef90	UniRef90_A0A174UJK7	Terminase small subunit	NA
UHGV-1402067_8	eggNOG-mapper	509191.AEDB02000023_gene3615	Terminase small subunit	NA
UHGV-1402067_8	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1402067_8	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1402067_8	Structural annotation	PF03592, COG3728	NA	NA
UHGV-1402067_9	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1402067_9	UniRef90	UniRef90_A0A349PW62	PBSX family phage terminase large subunit (Fragment)	NA
UHGV-1402067_9	eggNOG-mapper	877414.ATWA01000001_gene906	Terminase-like family	NA
UHGV-1402067_9	COG	COG1783	Phage terminase large subunit	NA
UHGV-1402067_9	Structural annotation	PF03237	NA	NA
UHGV-1402067_10	KOfam	K14059	int; integrase	NA
UHGV-1402067_10	PHROG	phrog_1	integrase	integration and excision
UHGV-1402067_10	UniRef90	UniRef90_UPI00082FCE48	site-specific integrase	NA
UHGV-1402067_10	eggNOG-mapper	1410653.JHVC01000004_gene3223	Belongs to the 'phage' integrase family	NA
UHGV-1402067_10	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1402067_10	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1402067_10	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1402067_10	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1402067_10	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1402067_11	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-1402067_11	UniRef90	UniRef90_A0A658JYT8	XRE family transcriptional regulator	NA
UHGV-1402067_11	Pfam	PF13443	Cro/C1-type HTH DNA-binding domain	HTH_26
UHGV-1402067_11	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1402067_11	Structural annotation	PF01381, NF041951, COG1396	NA	NA
UHGV-1402067_14	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-1402067_14	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-1402067_14	UniRef90	UniRef90_UPI0006CF9D07	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1402067_14	eggNOG-mapper	1291050.JAGE01000002_gene3391	Sigma-70, region 4	NA
UHGV-1402067_14	Pfam	PF04542	Sigma-70 region 2	Sigma70_r2
UHGV-1402067_14	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1402067_14	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-1402067_14	Structural annotation	PF07638, MF_00959, TIGR02859, COG1191	NA	NA
UHGV-1402067_15	KOfam	K03091	sigH; RNA polymerase sporulation-specific sigma factor	NA
UHGV-1402067_15	PHROG	phrog_351	RNA polymerase sigma factor	transcription regulation
UHGV-1402067_15	UniRef90	UniRef90_UPI0004B555A5	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1402067_15	eggNOG-mapper	1105031.HMPREF1141_0544	Sigma-70, region 4	NA
UHGV-1402067_15	Pfam	PF04545	Sigma-70, region 4	Sigma70_r4
UHGV-1402067_15	NCBIFam	TIGR02937.1	sigma-70 family RNA polymerase sigma factor	NA
UHGV-1402067_15	COG	COG0568	DNA-directed RNA polymerase, sigma subunit (sigma70/sigma32)	NA
UHGV-1402067_15	Structural annotation	PF04545, PF04542, MF_00961, TIGR02393, COG1191	NA	NA
UHGV-1402067_17	PHROG	phrog_989	NA	unknown function
UHGV-1402067_17	UniRef90	UniRef90_UPI00093A0734	transcriptional regulator	NA
UHGV-1402067_17	eggNOG-mapper	411467.BACCAP_00949	NA	NA
UHGV-1402067_18	PHROG	phrog_13890	NA	unknown function
UHGV-1402067_18	UniRef90	UniRef90_UPI00189F4C1E	antitoxin	NA
UHGV-1402067_18	eggNOG-mapper	1507.HMPREF0262_00298	NA	NA
UHGV-1402067_18	Structural annotation	PF10723, NF010256, COG4710	NA	NA
UHGV-1402067_20	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-1402067_20	eggNOG-mapper	391009.Tmel_1473	YqaJ-like viral recombinase domain	NA
UHGV-1402067_20	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-1402067_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1402067_23	PHROG	phrog_10250	NA	unknown function
UHGV-1402067_23	UniRef90	UniRef90_A0A174UMJ3	Bacteriophage terminase large (ATPase) subunit and inactivated derivatives	NA
UHGV-1402067_23	eggNOG-mapper	411473.RUMCAL_01923	Phage terminase, large subunit, PBSX family	NA
UHGV-1402067_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-1402067_23	Structural annotation	PF20441, MF_04148, TIGR01547, COG5323	NA	NA
UHGV-1402067_24	PHROG	phrog_64	portal protein	head and packaging
UHGV-1402067_24	UniRef90	UniRef90_A0A1Y4MEG5	Phage portal protein	NA
UHGV-1402067_24	eggNOG-mapper	742740.HMPREF9474_02357	Phage portal protein, SPP1 family	NA
UHGV-1402067_24	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1402067_24	Structural annotation	PF05133, MF_04120, TIGR01538, COG5518	NA	NA
UHGV-1402067_25	PHROG	phrog_115	minor head protein	head and packaging
UHGV-1402067_25	UniRef90	UniRef90_A0A1Q6KT98	Phage_Mu_F domain-containing protein	NA
UHGV-1402067_25	eggNOG-mapper	1121289.JHVL01000082_gene1211	Phage Mu protein F like protein	NA
UHGV-1402067_25	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-1402067_25	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-1402067_25	COG	COG2369	NA	NA
UHGV-1402067_25	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-1402067_26	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-1402067_26	UniRef90	UniRef90_UPI0011DDD0C5	phage scaffolding protein	NA
UHGV-1402067_26	eggNOG-mapper	742740.HMPREF9474_02354	Phage minor structural protein GP20	NA
UHGV-1402067_26	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-1402067_26	Structural annotation	PF06810	NA	NA
UHGV-1402067_27	PHROG	phrog_544	major head protein	head and packaging
UHGV-1402067_27	UniRef90	UniRef90_A0A6N3FT63	Phage capsid family protein	NA
UHGV-1402067_27	eggNOG-mapper	428127.EUBDOL_01555	NA	NA
UHGV-1402067_27	Structural annotation	PF06673, MF_04119, TIGR04387, COG4653	NA	NA
UHGV-1402067_28	PHROG	phrog_132	head-tail adaptor	connector
UHGV-1402067_28	eggNOG-mapper	1321779.HMPREF1984_01304	NA	NA
UHGV-1402067_28	Structural annotation	PF05135	NA	NA
UHGV-1402067_29	PHROG	phrog_615	head-tail adaptor	connector
UHGV-1402067_29	UniRef90	UniRef90_A0A8E7UHT8	ABC transporter ATP-binding protein	NA
UHGV-1402067_29	eggNOG-mapper	742740.HMPREF9474_02351	NA	NA
UHGV-1402067_29	Structural annotation	PF12206, TIGR01563, COG5614	NA	NA
UHGV-1402067_30	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-1402067_30	UniRef90	UniRef90_UPI0018A06063	HK97 gp10 family phage protein	NA
UHGV-1402067_30	eggNOG-mapper	1095750.HMPREF9970_0283	Bacteriophage HK97-gp10, putative tail-component	NA
UHGV-1402067_30	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-1402067_30	Structural annotation	PF04883, COG5005	NA	NA
UHGV-1402067_31	PHROG	phrog_525	NA	unknown function
UHGV-1402067_31	UniRef90	UniRef90_A0A0A8JL34	Flagellar hook capping protein	NA
UHGV-1402067_31	eggNOG-mapper	1151292.QEW_1340	NA	NA
UHGV-1402067_31	Pfam	PF20765	NA	DUF6838
UHGV-1402067_31	Structural annotation	PF20765, COG5003	NA	NA
UHGV-1402067_32	PHROG	phrog_966	NA	unknown function
UHGV-1402067_32	eggNOG-mapper	1408437.JNJN01000045_gene586	NA	NA
UHGV-1402067_33	PHROG	phrog_279	tail sheath	tail
UHGV-1402067_33	UniRef90	UniRef90_A0A174UH70	Phage tail sheath protein	NA
UHGV-1402067_33	eggNOG-mapper	742740.HMPREF9474_02347	Phage tail sheath C-terminal domain	NA
UHGV-1402067_33	Pfam	PF17481	Phage tail sheath protein beta-sandwich domain	Phage_sheath_1N
UHGV-1402067_33	Pfam	PF04984	Phage tail sheath protein subtilisin-like domain	Phage_sheath_1
UHGV-1402067_33	Pfam	PF17482	Phage tail sheath C-terminal domain	Phage_sheath_1C
UHGV-1402067_33	Structural annotation	PF17482, PF04984, PF17481, COG4386	NA	NA
UHGV-1402067_34	PHROG	phrog_365	tail protein	tail
UHGV-1402067_34	UniRef90	UniRef90_A0A174ULP3	Phage-like element PBSX protein xkdM	NA
UHGV-1402067_34	eggNOG-mapper	1095750.HMPREF9970_0279	Phage tail tube protein	NA
UHGV-1402067_34	Pfam	PF09393	Phage tail tube protein	DUF2001
UHGV-1402067_34	Structural annotation	PF09393, TIGR02241, COG5437	NA	NA
UHGV-1402067_35	PHROG	phrog_389	tail protein XkdN-like	tail
UHGV-1402067_35	UniRef90	UniRef90_A0A1Q6KSR3	Phage portal protein	NA
UHGV-1402067_35	eggNOG-mapper	1095750.HMPREF9970_0278	XkdN-like protein	NA
UHGV-1402067_35	Pfam	PF08890	Phage XkdN-like tail assembly chaperone protein, TAC	Phage_TAC_5
UHGV-1402067_35	Structural annotation	PF08890, COG4518	NA	NA
UHGV-1402067_36	PHROG	phrog_1068	tail length tape measure protein	tail
UHGV-1402067_36	UniRef90	UniRef90_A0A1Y4MQ23	TMP_3 domain-containing protein	NA
UHGV-1402067_36	eggNOG-mapper	861454.HMPREF9099_00619	tape measure	NA
UHGV-1402067_36	Pfam	PF20155	Tape measure protein	TMP_3
UHGV-1402067_36	NCBIFam	TIGR02675.1	tape measure protein	NA
UHGV-1402067_36	COG	COG5281	Phage-related minor tail protein	NA
UHGV-1402067_36	Structural annotation	PF20155, TIGR02675, COG3941	NA	NA
UHGV-1402067_37	PHROG	phrog_380	endolysin	lysis
UHGV-1402067_37	eggNOG-mapper	642492.Clole_2745	PFAM LysM domain	NA
UHGV-1402067_37	COG	COG1652	Cytoplasmic potassium-binding protein Kbp/XkdP/YgaU, contains LysM domain	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1402067	Yes	25,994 bps	53.58%	57.60%	0.9738
UHGV-1716418	No	13,148 bps	56.07%	29.36%	0.9800