vOTU-034709

Overview

vOTU representative UHGV-1419116

No. of genomes 2

Genome length 35,900 bps

Completeness 89.13% (medium-quality)

Host Lachnospira

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-034709
Number of genomes	2
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00003 › vSUBFAM-01130 › vGENUS-20989 › vOTU-034709
Host taxonomy	Bacteria › Firmicutes A › Clostridia › Lachnospirales › Lachnospiraceae › Lachnospira
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-1419116
BioSample	NA
Genome length	35,900 bps
CheckV completeness	89.13% (medium-quality)
CheckV contamination	0.00%
CDS count	50
CDS density	93.12%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-1419116_2	KOfam	K14059	int; integrase	NA
UHGV-1419116_2	PHROG	phrog_1	integrase	integration and excision
UHGV-1419116_2	UniRef90	UniRef90_R6AKI6	Site-specific recombinase phage integrase family	NA
UHGV-1419116_2	eggNOG-mapper	536233.CLO_0855	Arm DNA-binding domain	NA
UHGV-1419116_2	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-1419116_2	Pfam	PF14659	Phage integrase, N-terminal SAM-like domain	Phage_int_SAM_3
UHGV-1419116_2	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-1419116_2	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-1419116_2	Structural annotation	PF00589, PF14659, PF14657, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-1419116_3	PHROG	phrog_2695	NA	unknown function
UHGV-1419116_3	UniRef90	UniRef90_A0A174PBX4	SIR2_2 domain-containing protein	NA
UHGV-1419116_3	eggNOG-mapper	1504823.CCMM01000008_gene1082	NAD+ binding	NA
UHGV-1419116_3	PADLOC	Sirtuin_Blast2	NA	NA
UHGV-1419116_3	Pfam	PF13289	SIR2-like domain	SIR2_2
UHGV-1419116_3	COG	COG0846	NAD-dependent protein deacetylase, SIR2 family	NA
UHGV-1419116_3	Structural annotation	PF13289	NA	NA
UHGV-1419116_4	eggNOG-mapper	658655.HMPREF0988_00902	NA	NA
UHGV-1419116_6	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-1419116_6	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-1419116_6	UniRef90	UniRef90_A0A373LXV0	LexA family transcriptional regulator	NA
UHGV-1419116_6	eggNOG-mapper	411490.ANACAC_00815	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair	NA
UHGV-1419116_6	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-1419116_6	COG	COG1974	SOS-response transcriptional repressor LexA (RecA-mediated autopeptidase)	NA
UHGV-1419116_6	Structural annotation	PF01381, PF00717, MF_00015, NF041951, COG1396	NA	NA
UHGV-1419116_7	KOfam	K22300	dicA; HTH-type transcriptional regulator, cell division transcriptional repressor	NA
UHGV-1419116_7	PHROG	phrog_2104	NA	unknown function
UHGV-1419116_7	UniRef90	UniRef90_A0A396QFT7	XRE family transcriptional regulator	NA
UHGV-1419116_7	eggNOG-mapper	1321784.HMPREF1987_01097	Helix-turn-helix XRE-family like proteins	NA
UHGV-1419116_7	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-1419116_7	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-1419116_7	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-1419116_7	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-1419116_10	PHROG	phrog_585	NA	unknown function
UHGV-1419116_10	UniRef90	UniRef90_UPI00177B87D0	NA	NA
UHGV-1419116_10	eggNOG-mapper	1035189.HMPREF9954_1966	NA	NA
UHGV-1419116_10	Pfam	PF10711	NA	DUF2513
UHGV-1419116_10	Structural annotation	PF10711, MF_01819, TIGR03433, COG3432	NA	NA
UHGV-1419116_12	UniRef90	UniRef90_A0A356C6A4	HTH_17 domain-containing protein	NA
UHGV-1419116_12	eggNOG-mapper	318464.IO99_13850	Helix-turn-helix domain	NA
UHGV-1419116_12	Pfam	PF12728	Helix-turn-helix domain	HTH_17
UHGV-1419116_12	NCBIFam	TIGR01764.1	excisionase family DNA-binding protein	NA
UHGV-1419116_12	Structural annotation	PF12728, TIGR01764, COG3311	NA	NA
UHGV-1419116_14	PHROG	phrog_3584	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-1419116_14	UniRef90	UniRef90_A0A4P8IFK4	NA	NA
UHGV-1419116_14	eggNOG-mapper	742741.HMPREF9475_00404	NA	NA
UHGV-1419116_14	Structural annotation	PF21578	NA	NA
UHGV-1419116_15	KOfam	K03469	rnhA, RNASEH1; ribonuclease HI [EC:3.1.26.4]	NA
UHGV-1419116_15	PHROG	phrog_531	Rnase H	DNA, RNA and nucleotide metabolism
UHGV-1419116_15	UniRef90	UniRef90_A0A413YU26	RNase H type-1 domain-containing protein	NA
UHGV-1419116_15	eggNOG-mapper	941824.TCEL_01720	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids	NA
UHGV-1419116_15	Pfam	PF00075	RNase H	RNase_H
UHGV-1419116_15	COG	COG0328	Ribonuclease HI	NA
UHGV-1419116_15	Structural annotation	PF00075, MF_00042, NF001236, COG0328	NA	NA
UHGV-1419116_16	Structural annotation	PF02179, NF011863	NA	NA
UHGV-1419116_17	PHROG	phrog_7566	NA	unknown function
UHGV-1419116_17	eggNOG-mapper	1235800.C819_00511	NA	NA
UHGV-1419116_19	KOfam	K07319	yhdJ; adenine-specific DNA-methyltransferase [EC:2.1.1.72]	NA
UHGV-1419116_19	PHROG	phrog_16	DNA helicase	DNA, RNA and nucleotide metabolism
UHGV-1419116_19	UniRef90	UniRef90_A0A356C6C6	DNA methylase N-4	NA
UHGV-1419116_19	eggNOG-mapper	1298920.KI911353_gene2709	DEAD-like helicases superfamily	NA
UHGV-1419116_19	Pfam	PF00176	SNF2-related domain	SNF2-rel_dom
UHGV-1419116_19	Pfam	PF01555	DNA methylase	N6_N4_Mtase
UHGV-1419116_19	COG	COG0553	Superfamily II DNA or RNA helicase, SNF2 family	NA
UHGV-1419116_19	Structural annotation	PF01555, PF16203, PF04851, MF_01821, MF_00472, NF041790, NF008572, COG0553, COG0863	NA	NA
UHGV-1419116_20	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1419116_20	PHROG	phrog_29443	NA	unknown function
UHGV-1419116_20	UniRef90	UniRef90_A0A318EQP9	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1419116_20	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-1419116_20	PADLOC	MTase_II_00020	Type II methyltransferase	RM
UHGV-1419116_20	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1419116_20	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1419116_21	KOfam	K00558	DNMT1, dcm; DNA (cytosine-5)-methyltransferase 1 [EC:2.1.1.37]	NA
UHGV-1419116_21	PHROG	phrog_23072	DNA methyltransferase	other
UHGV-1419116_21	UniRef90	UniRef90_A0A3R6RTV6	DNA (cytosine-5-)-methyltransferase	NA
UHGV-1419116_21	eggNOG-mapper	1235800.C819_02255	C-5 cytosine-specific DNA methylase	NA
UHGV-1419116_21	PADLOC	DrmMII_00008	DrmMII	DISARM
UHGV-1419116_21	Pfam	PF00145	C-5 cytosine-specific DNA methylase	DNA_methylase
UHGV-1419116_21	COG	COG0270	DNA-cytosine methylase	NA
UHGV-1419116_25	PHROG	phrog_2118	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-1419116_25	UniRef90	UniRef90_A0A2U2EKN9	HNHc domain-containing protein	NA
UHGV-1419116_25	eggNOG-mapper	1235799.C818_02668	endonuclease activity	NA
UHGV-1419116_25	Pfam	PF01844	HNH endonuclease	HNH
UHGV-1419116_25	COG	COG1403	5-methylcytosine-specific restriction endonuclease McrA	NA
UHGV-1419116_28	PHROG	phrog_5051	NA	unknown function
UHGV-1419116_30	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-1419116_30	eggNOG-mapper	411490.ANACAC_00789	NA	NA
UHGV-1419116_30	Structural annotation	PF02996	NA	NA
UHGV-1419116_31	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-1419116_31	PHROG	phrog_2606	terminase small subunit	head and packaging
UHGV-1419116_31	UniRef90	UniRef90_A0A6B4XMY8	Phage portal protein	NA
UHGV-1419116_31	eggNOG-mapper	1415774.U728_838	terminase, small subunit	NA
UHGV-1419116_31	Pfam	PF06056	Putative ATPase subunit of terminase (gpP-like)	Terminase_5
UHGV-1419116_31	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-1419116_31	COG	COG3728	Phage terminase, small subunit	NA
UHGV-1419116_31	Structural annotation	PF03592, PF10668, NF040601, COG3728	NA	NA
UHGV-1419116_32	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-1419116_32	PHROG	phrog_2	terminase large subunit	head and packaging
UHGV-1419116_32	UniRef90	UniRef90_UPI001F24FC3E	PBSX family phage terminase large subunit	NA
UHGV-1419116_32	eggNOG-mapper	1235799.C818_04217	Phage terminase large subunit	NA
UHGV-1419116_32	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-1419116_32	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-1419116_32	COG	COG1783	Phage terminase large subunit	NA
UHGV-1419116_32	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-1419116_33	PHROG	phrog_533	portal protein	head and packaging
UHGV-1419116_33	UniRef90	UniRef90_UPI00156E473F	phage portal protein	NA
UHGV-1419116_33	eggNOG-mapper	411461.DORFOR_00749	COG NOG25118 non supervised orthologous group	NA
UHGV-1419116_33	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-1419116_33	Structural annotation	PF05133, MF_04120, TIGR01542, COG5511	NA	NA
UHGV-1419116_34	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1419116_34	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-1419116_34	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1419116_34	COG	COG2369	NA	NA
UHGV-1419116_35	PHROG	phrog_581	minor head protein	head and packaging
UHGV-1419116_35	eggNOG-mapper	1449050.JNLE01000003_gene3892	Phage minor capsid protein 2	NA
UHGV-1419116_35	Pfam	PF06152	Phage minor capsid protein 2	Phage_min_cap2
UHGV-1419116_35	COG	COG2369	NA	NA
UHGV-1419116_36	KOfam	K07584	NA	NA
UHGV-1419116_36	PHROG	phrog_4478	peptidase	other
UHGV-1419116_36	UniRef90	UniRef90_A0A2Z4UEY6	Ribosomal-processing cysteine protease Prp	NA
UHGV-1419116_36	eggNOG-mapper	411474.COPEUT_00209	ribosomal protein	NA
UHGV-1419116_36	Pfam	PF04327	Cysteine protease Prp	Peptidase_Prp
UHGV-1419116_36	COG	COG2868	NA	NA
UHGV-1419116_36	Structural annotation	PF04327, NF011124, COG2868	NA	NA
UHGV-1419116_37	PHROG	phrog_2303	head scaffolding protein	head and packaging
UHGV-1419116_37	eggNOG-mapper	1321782.HMPREF1986_02267	NA	NA
UHGV-1419116_37	Structural annotation	PF10788, MF_02110	NA	NA
UHGV-1419116_38	PHROG	phrog_10	major head protein	head and packaging
UHGV-1419116_38	UniRef90	UniRef90_UPI001D090FF5	phage major capsid protein	NA
UHGV-1419116_38	eggNOG-mapper	1235792.C808_05368	Phage capsid family	NA
UHGV-1419116_38	Pfam	PF05065	Phage capsid family	Phage_capsid
UHGV-1419116_38	NCBIFam	TIGR01554.2	phage major capsid protein	NA
UHGV-1419116_38	COG	COG4653	Predicted phage phi-C31 gp36 major capsid-like protein	NA
UHGV-1419116_38	Structural annotation	PF05065, MF_04119, TIGR01554, COG4653	NA	NA
UHGV-1419116_39	PHROG	phrog_541	head-tail adaptor	connector
UHGV-1419116_39	eggNOG-mapper	1449050.JNLE01000003_gene3888	NA	NA
UHGV-1419116_41	PHROG	phrog_3366	NA	unknown function
UHGV-1419116_41	eggNOG-mapper	1449050.JNLE01000003_gene3887	NA	NA
UHGV-1419116_41	Pfam	PF20536	NA	DUF6751
UHGV-1419116_41	Structural annotation	PF20536, TIGR01563	NA	NA
UHGV-1419116_42	PHROG	phrog_556	minor head protein	head and packaging
UHGV-1419116_42	UniRef90	UniRef90_A0A1M7NJ72	Minor capsid protein	NA
UHGV-1419116_42	eggNOG-mapper	1304866.K413DRAFT_3041	NA	NA
UHGV-1419116_42	Pfam	PF11114	Minor capsid protein	Minor_capsid_2
UHGV-1419116_42	Structural annotation	PF11114	NA	NA
UHGV-1419116_43	PHROG	phrog_3266	tail completion	connector
UHGV-1419116_43	eggNOG-mapper	1449050.JNLE01000003_gene3885	NA	NA
UHGV-1419116_43	Structural annotation	PF20765	NA	NA
UHGV-1419116_44	PHROG	phrog_3099	NA	unknown function
UHGV-1419116_44	eggNOG-mapper	1160721.RBI_II00532	NA	NA
UHGV-1419116_44	Structural annotation	PF06199, TIGR02126, COG5437	NA	NA
UHGV-1419116_45	PHROG	phrog_11299	NA	unknown function
UHGV-1419116_45	eggNOG-mapper	1298920.KI911353_gene2067	NA	NA
UHGV-1419116_46	PHROG	phrog_706	NA	unknown function
UHGV-1419116_46	UniRef90	UniRef90_UPI0015941ACD	Gp15 family bacteriophage protein	NA
UHGV-1419116_46	eggNOG-mapper	1304866.K413DRAFT_3045	Bacteriophage Gp15 protein	NA
UHGV-1419116_46	Pfam	PF06854	Bacteriophage Gp15 protein	Phage_Gp15
UHGV-1419116_46	Structural annotation	PF06854	NA	NA
UHGV-1419116_47	PHROG	phrog_1535	tail length tape measure protein	tail
UHGV-1419116_47	UniRef90	UniRef90_A0A1I2KTM2	Phage-related protein	NA
UHGV-1419116_47	eggNOG-mapper	1235790.C805_00087	tape measure	NA
UHGV-1419116_47	COG	COG3941	Phage tail tape-measure protein, controls tail length	NA
UHGV-1419116_48	PHROG	phrog_1194	NA	unknown function
UHGV-1419116_48	Structural annotation	PF20458, TIGR02126, COG3499	NA	NA
UHGV-1419116_49	PHROG	phrog_6616	tail protein	tail
UHGV-1419116_49	UniRef90	UniRef90_UPI001BBF59EA	Tail fiber domain-containing protein	NA
UHGV-1419116_49	eggNOG-mapper	33035.JPJF01000043_gene1002	NA	NA
UHGV-1419116_49	Pfam	PF13884	Chaperone of endosialidase	Peptidase_S74
UHGV-1419116_49	Structural annotation	PF14594, NF033848, COG3500	NA	NA
UHGV-1419116_50	eggNOG-mapper	476272.RUMHYD_01994	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-1419116	Yes	35,900 bps	37.16%	89.13%	0.9779
UHGV-1729645	No	14,818 bps	38.47%	37.06%	0.9728