vOTU-035616

Overview

vOTU representative UHGV-0195197

No. of genomes 3

Genome length 29,473 bps

Completeness 78.52% (medium-quality)

Host Unclassified

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-035616
Number of genomes	3
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00001 › vOTU-035616
Host taxonomy
Host range breadth
Host prediction method
Lifestyle	Temperate (evidence: geNomad)

Representative genome
Genome ID	UHGV-0195197
BioSample	NA
Genome length	29,473 bps
CheckV completeness	78.52% (medium-quality)
CheckV contamination	0.00%
CDS count	48
CDS density	92.01%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-0195197_1	KOfam	K14059	int; integrase	NA
UHGV-0195197_1	PHROG	phrog_1	integrase	integration and excision
UHGV-0195197_1	UniRef90	UniRef90_UPI001C0FCED0	site-specific integrase	NA
UHGV-0195197_1	eggNOG-mapper	935948.KE386495_gene1213	Phage integrase family	NA
UHGV-0195197_1	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-0195197_1	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-0195197_1	Structural annotation	PF00589, MF_02055, TIGR02224, COG4974	NA	NA
UHGV-0195197_2	PHROG	phrog_87	metallo-protease	other
UHGV-0195197_2	UniRef90	UniRef90_A0A1H3E8L5	Peptidase_M78 domain-containing protein	NA
UHGV-0195197_2	eggNOG-mapper	86416.Clopa_3167	NA	NA
UHGV-0195197_2	Pfam	PF06114	IrrE N-terminal-like domain	Peptidase_M78
UHGV-0195197_2	COG	COG2856	Zn-dependent peptidase ImmA, M78 family	NA
UHGV-0195197_2	Structural annotation	PF06114, COG2856	NA	NA
UHGV-0195197_3	KOfam	K22299	rghR; HTH-type transcriptional regulator, competence development regulator	NA
UHGV-0195197_3	PHROG	phrog_8	transcriptional regulator	transcription regulation
UHGV-0195197_3	UniRef90	UniRef90_A0A1H3E8U6	Helix-turn-helix domain-containing protein	NA
UHGV-0195197_3	eggNOG-mapper	350688.Clos_1286	Cro/C1-type HTH DNA-binding domain	NA
UHGV-0195197_3	PADLOC	retron_type_VI_hth_cluster2_1	NA	Retron
UHGV-0195197_3	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-0195197_3	COG	COG3655	DNA-binding transcriptional regulator, XRE family	NA
UHGV-0195197_3	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0195197_4	UniRef90	UniRef90_A0A1M4WSI7	Helix-turn-helix domain-containing protein	NA
UHGV-0195197_4	eggNOG-mapper	1196028.ALEF01000043_gene495	sequence-specific DNA binding	NA
UHGV-0195197_4	Pfam	PF12844	Helix-turn-helix domain	HTH_19
UHGV-0195197_4	COG	COG1396	Transcriptional regulator, contains XRE-family HTH domain	NA
UHGV-0195197_4	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-0195197_5	PHROG	phrog_12396	NA	unknown function
UHGV-0195197_5	eggNOG-mapper	318464.IO99_13855	NA	NA
UHGV-0195197_6	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-0195197_6	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-0195197_6	UniRef90	UniRef90_UPI000A1723B1	phage antirepressor KilAC domain-containing protein	NA
UHGV-0195197_6	eggNOG-mapper	642492.Clole_1828	Phage antirepressor protein	NA
UHGV-0195197_6	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-0195197_6	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-0195197_6	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-0195197_6	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-0195197_6	Structural annotation	PF03374, PF10543, TIGR02681, COG3645	NA	NA
UHGV-0195197_7	UniRef90	UniRef90_UPI001C10F959	helix-turn-helix domain-containing protein	NA
UHGV-0195197_12	PHROG	phrog_434	RecE-like recombination exonuclease	DNA, RNA and nucleotide metabolism
UHGV-0195197_12	UniRef90	UniRef90_A0A1T4K7A8	Putative phage-type endonuclease	NA
UHGV-0195197_12	eggNOG-mapper	580331.Thit_1407	YqaJ viral recombinase family	NA
UHGV-0195197_12	Pfam	PF09588	YqaJ-like viral recombinase domain	YqaJ
UHGV-0195197_12	NCBIFam	TIGR03033.1	putative phage-type endonuclease	NA
UHGV-0195197_12	COG	COG5377	Phage-related protein, predicted endonuclease	NA
UHGV-0195197_12	Structural annotation	PF09588, MF_03030, TIGR03033, COG5377	NA	NA
UHGV-0195197_13	KOfam	K07455	recT; recombination protein RecT	NA
UHGV-0195197_13	PHROG	phrog_148	RecT-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-0195197_13	UniRef90	UniRef90_A0A1T4K7J2	Recombination protein RecT	NA
UHGV-0195197_13	eggNOG-mapper	365048.Q0H279_9CAUD	DNA metabolic process	NA
UHGV-0195197_13	Pfam	PF03837	RecT family	RecT
UHGV-0195197_13	NCBIFam	NF007351.0	recombination protein RecT	NA
UHGV-0195197_13	Structural annotation	PF03837, NF007351, COG3723	NA	NA
UHGV-0195197_14	KOfam	K02086	dnaD; DNA replication protein	NA
UHGV-0195197_14	PHROG	phrog_2562	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-0195197_14	UniRef90	UniRef90_A0A845QZ77	NA	NA
UHGV-0195197_14	eggNOG-mapper	1336234.JAGN01000004_gene543	NA	NA
UHGV-0195197_14	Pfam	PF14297	Lin1244/Lin1753-like, N-terminal	Lin1244_N
UHGV-0195197_14	Pfam	PF07261	Replication initiation and membrane attachment	DnaB_2
UHGV-0195197_14	NCBIFam	TIGR01446.1	DnaD domain protein	NA
UHGV-0195197_14	COG	COG3935	DNA replication protein DnaD	NA
UHGV-0195197_14	Structural annotation	PF14297, TIGR01714	NA	NA
UHGV-0195197_15	KOfam	K02315	dnaC; DNA replication protein DnaC	NA
UHGV-0195197_15	PHROG	phrog_50	DnaC-like helicase loader	DNA, RNA and nucleotide metabolism
UHGV-0195197_15	UniRef90	UniRef90_A0A1X2FUW7	DNA replication protein (Fragment)	NA
UHGV-0195197_15	eggNOG-mapper	1304880.JAGB01000002_gene2233	PFAM IstB-like ATP binding protein	NA
UHGV-0195197_15	Pfam	PF01695	IstB-like ATP binding protein	IstB_IS21
UHGV-0195197_15	NCBIFam	NF005378.0	hypothetical protein	NA
UHGV-0195197_15	COG	COG1484	DNA replication protein DnaC	NA
UHGV-0195197_15	Structural annotation	PF01695, MF_01919, NF005378, COG1484	NA	NA
UHGV-0195197_16	UniRef90	UniRef90_R5GX78	DNA polymerase II large subunit	NA
UHGV-0195197_18	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-0195197_18	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-0195197_18	UniRef90	UniRef90_A0A1S1V6E1	Endodeoxyribonuclease RusA	NA
UHGV-0195197_18	eggNOG-mapper	588581.Cpap_1486	Endodeoxyribonuclease RusA	NA
UHGV-0195197_18	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-0195197_18	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-0195197_18	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-0195197_19	PHROG	phrog_6568	NA	unknown function
UHGV-0195197_20	PHROG	phrog_36	transcriptional regulator	transcription regulation
UHGV-0195197_20	UniRef90	UniRef90_A0A0C7NQ84	RNA polymerase sigma factor, region 3/4	NA
UHGV-0195197_20	eggNOG-mapper	768710.DesyoDRAFT_5229	NA	NA
UHGV-0195197_21	PHROG	phrog_4980	superinfection exclusion	moron, auxiliary metabolic gene and host takeover
UHGV-0195197_21	UniRef90	UniRef90_A0A1T4K6S7	Host cell surface-exposed lipoprotein	NA
UHGV-0195197_21	eggNOG-mapper	1123009.AUID01000002_gene2091	Host cell surface-exposed lipoprotein	NA
UHGV-0195197_21	Pfam	PF07553	Host cell surface-exposed lipoprotein	Lipoprotein_Ltp
UHGV-0195197_21	COG	COG3064	Membrane protein TolA involved in colicin uptake	NA
UHGV-0195197_21	Structural annotation	PF07553, MF_01114, NF001062	NA	NA
UHGV-0195197_22	KOfam	K07474	xtmA; phage terminase small subunit	NA
UHGV-0195197_22	PHROG	phrog_51	terminase small subunit	head and packaging
UHGV-0195197_22	UniRef90	UniRef90_A0A1T4K6R1	Phage terminase small subunit	NA
UHGV-0195197_22	eggNOG-mapper	1294142.CINTURNW_1022	Terminase Small Subunit	NA
UHGV-0195197_22	Pfam	PF03592	Terminase small subunit	Terminase_2
UHGV-0195197_22	COG	COG3728	Phage terminase, small subunit	NA
UHGV-0195197_22	Structural annotation	PF03592, COG3728	NA	NA
UHGV-0195197_23	KOfam	K06909	xtmB; phage terminase large subunit	NA
UHGV-0195197_23	PHROG	phrog_3717	terminase large subunit	head and packaging
UHGV-0195197_23	UniRef90	UniRef90_A0A1T4K6M2	Phage terminase, large subunit, PBSX family	NA
UHGV-0195197_23	eggNOG-mapper	1158612.I580_01906	Terminase RNAseH like domain	NA
UHGV-0195197_23	Pfam	PF04466	Phage terminase large subunit	Terminase_3
UHGV-0195197_23	Pfam	PF17288	Terminase RNAseH like domain	Terminase_3C
UHGV-0195197_23	NCBIFam	TIGR01547.1	PBSX family phage terminase large subunit	NA
UHGV-0195197_23	COG	COG1783	Phage terminase large subunit	NA
UHGV-0195197_23	Structural annotation	PF04466, PF17288, MF_04145, TIGR01547, COG1783	NA	NA
UHGV-0195197_26	PHROG	phrog_64	portal protein	head and packaging
UHGV-0195197_26	UniRef90	UniRef90_UPI001EEE90A4	phage portal protein	NA
UHGV-0195197_26	eggNOG-mapper	929506.CbC4_1212	Phage portal protein, SPP1 Gp6-like	NA
UHGV-0195197_26	Pfam	PF05133	Phage portal protein, SPP1 Gp6-like	Phage_prot_Gp6
UHGV-0195197_26	Structural annotation	PF05133, MF_04120, TIGR01538, COG3567	NA	NA
UHGV-0195197_27	PHROG	phrog_595	head maturation protease	head and packaging
UHGV-0195197_27	UniRef90	UniRef90_A0A5R9C6S9	Head protein	NA
UHGV-0195197_27	eggNOG-mapper	226185.EF_0335	Phage Mu protein F like protein	NA
UHGV-0195197_27	Pfam	PF04233	Phage Mu protein F like protein	Phage_Mu_F
UHGV-0195197_27	Pfam	PF15542	Bacterial toxin 50	Ntox50
UHGV-0195197_27	NCBIFam	TIGR01641.1	minor capsid protein	NA
UHGV-0195197_27	COG	COG2369	NA	NA
UHGV-0195197_27	Structural annotation	PF04233, TIGR01641, COG2369	NA	NA
UHGV-0195197_30	PHROG	phrog_194	head scaffolding protein	head and packaging
UHGV-0195197_30	UniRef90	UniRef90_UPI001EEEEE4A	phage scaffolding protein	NA
UHGV-0195197_30	eggNOG-mapper	1567014.A0A0A7S0J5_9VIRU	Phage minor structural protein GP20	NA
UHGV-0195197_30	Pfam	PF06810	Phage minor structural protein GP20	Phage_GP20
UHGV-0195197_30	Structural annotation	PF06810	NA	NA
UHGV-0195197_31	PHROG	phrog_422	major head protein	head and packaging
UHGV-0195197_31	UniRef90	UniRef90_A3DIA2	NA	NA
UHGV-0195197_31	eggNOG-mapper	1209989.TepiRe1_1151	NA	NA
UHGV-0195197_31	Structural annotation	PF21703, MF_04119, TIGR04387, COG4834	NA	NA
UHGV-0195197_33	PHROG	phrog_1236	head protein	head and packaging
UHGV-0195197_33	UniRef90	UniRef90_A0A098AQ51	Putative prophage protein	NA
UHGV-0195197_33	eggNOG-mapper	386415.NT01CX_2172	NA	NA
UHGV-0195197_33	Pfam	PF05135	Phage gp6-like head-tail connector protein	Phage_connect_1
UHGV-0195197_33	Structural annotation	PF05135	NA	NA
UHGV-0195197_34	PHROG	phrog_1059	head-tail adaptor	connector
UHGV-0195197_34	UniRef90	UniRef90_A0A6G1NB95	Head-tail adaptor protein	NA
UHGV-0195197_34	eggNOG-mapper	226185.EF_0342	NA	NA
UHGV-0195197_34	Pfam	PF05521	Phage head-tail joining protein	Phage_H_T_join
UHGV-0195197_34	NCBIFam	TIGR01563.1	phage head closure protein	NA
UHGV-0195197_34	Structural annotation	PF05521, TIGR01563, COG5614	NA	NA
UHGV-0195197_35	PHROG	phrog_5	tail completion or Neck1 protein	connector
UHGV-0195197_35	UniRef90	UniRef90_A0A8F2U2S5	HK97 gp10 family phage protein	NA
UHGV-0195197_35	eggNOG-mapper	1540257.JQMW01000009_gene3375	NA	NA
UHGV-0195197_35	Pfam	PF04883	Bacteriophage HK97-gp10, putative tail-component	HK97-gp10_like
UHGV-0195197_36	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-0195197_36	UniRef90	UniRef90_Q4ZBR0	ORF019	NA
UHGV-0195197_36	eggNOG-mapper	320843.Q4ZBR0_9CAUD	sequence-specific DNA binding transcription factor activity	NA
UHGV-0195197_37	PHROG	phrog_957	head protein	head and packaging
UHGV-0195197_37	eggNOG-mapper	1140001.I571_01838	NA	NA
UHGV-0195197_38	PHROG	phrog_885	major tail protein	tail
UHGV-0195197_38	UniRef90	UniRef90_A0A098ANP7	Putative prophage protein	NA
UHGV-0195197_38	eggNOG-mapper	929506.CbC4_1221	NA	NA
UHGV-0195197_38	Structural annotation	PF06488, TIGR01603, COG5437	NA	NA
UHGV-0195197_39	PHROG	phrog_1021	NA	unknown function
UHGV-0195197_39	UniRef90	UniRef90_A0A098ANQ0	Putative prophage protein	NA
UHGV-0195197_39	eggNOG-mapper	673839.D2J068_9CAUD	NA	NA
UHGV-0195197_40	PHROG	phrog_1294	peptide methionine sulfoxide reductase	other
UHGV-0195197_40	UniRef90	UniRef90_UPI001ABA3300	peptide methionine sulfoxide reductase	NA
UHGV-0195197_40	eggNOG-mapper	386415.NT01CX_2165	NA	NA
UHGV-0195197_41	PHROG	phrog_58	tail length tape measure protein	tail
UHGV-0195197_41	eggNOG-mapper	1123405.AUMM01000039_gene141	minor tail protein	NA
UHGV-0195197_41	COG	COG5412	Phage-related protein	NA
UHGV-0195197_42	PHROG	phrog_36410	NA	unknown function
UHGV-0195197_42	UniRef90	UniRef90_A0A844FGT8	Phage tail family protein	NA
UHGV-0195197_42	eggNOG-mapper	1540257.JQMW01000013_gene730	Phage tail protein	NA
UHGV-0195197_42	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-0195197_42	COG	COG4722	Phage-related protein YomH	NA
UHGV-0195197_42	Structural annotation	PF16774, PF20753, TIGR01633, COG4722	NA	NA
UHGV-0195197_43	PHROG	phrog_5339	virion structural protein	head and packaging
UHGV-0195197_43	eggNOG-mapper	1499683.CCFF01000017_gene2563	COG NOG18825 non supervised orthologous group	NA
UHGV-0195197_43	Structural annotation	PF21567	NA	NA
UHGV-0195197_44	KOfam	K19721	COL5AS; collagen type V/XI/XXIV/XXVII, alpha	NA
UHGV-0195197_44	PHROG	phrog_538	minor tail protein	tail
UHGV-0195197_44	UniRef90	UniRef90_A0A1M6HSX0	Virus ReqiPepy6 Gp37-like protein	NA
UHGV-0195197_44	eggNOG-mapper	1540257.JQMW01000013_gene728	Siphovirus ReqiPepy6 Gp37-like protein	NA
UHGV-0195197_44	Pfam	PF14594	Siphovirus ReqiPepy6 Gp37-like protein	Sipho_Gp37
UHGV-0195197_44	Pfam	PF01391	Collagen triple helix repeat (20 copies)	Collagen
UHGV-0195197_44	COG	COG3266	Cell division protein DamX, binds to the septal ring, contains C-terminal SPOR domain	NA
UHGV-0195197_45	PHROG	phrog_2712	tail fiber protein	tail
UHGV-0195197_46	eggNOG-mapper	1347392.CCEZ01000005_gene1249	NA	NA

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-0195197	Yes	29,473 bps	34.37%	78.52%	0.9754
UHGV-1471349	No	30,566 bps	34.36%	81.40%	0.9745
UHGV-0141913	No	13,515 bps	35.16%	36.03%	0.9795