vOTU-035855

Overview

vOTU representative UHGV-2206273

No. of genomes 4

Genome length 28,861 bps

Completeness 71.08% (medium-quality)

Host Lacticaseibacillus

Prediction confidence Confident

vOTU information
vOTU ID	vOTU-035855
Number of genomes	4
Taxonomy (ICTV)	Duplodnaviria › Heunggongvirae › Uroviricota › Caudoviricetes
Taxonomy (UHGV)	vFAM-00086 › vSUBFAM-00639 › vGENUS-25420 › vSUBGEN-53531 › vOTU-035855
Host taxonomy	Bacteria › Firmicutes › Bacilli › Lactobacillales › Lactobacillaceae › Lacticaseibacillus
Host range breadth	Genus
Host prediction method	CRISPR
Lifestyle	Temperate (evidence: BACPHLIP)

Representative genome
Genome ID	UHGV-2206273
BioSample	SAMEA2580223
Genome length	28,861 bps
CheckV completeness	71.08% (medium-quality)
CheckV contamination	0.00%
CDS count	45
CDS density	86.77%
tRNA count	0
Integrase	No
Viral confidence	Confident

Representative genome content

Select view: Genome viewer Functional annotation

Functional annotation

Gene ID	Reference	Reference ID	Information	Category
UHGV-2206273_1	PHROG	phrog_167	tail length tape measure protein	tail
UHGV-2206273_1	eggNOG-mapper	1423732.BALS01000126_gene2495	domain protein	NA
UHGV-2206273_1	COG	COG3953	SLT domain protein	NA
UHGV-2206273_2	PHROG	phrog_202	distal tail protein Dit	tail
UHGV-2206273_2	UniRef90	UniRef90_UPI0011595152	phage tail family protein	NA
UHGV-2206273_2	eggNOG-mapper	146269.Q7Y4B1_9CAUD	Phage tail protein	NA
UHGV-2206273_2	Pfam	PF05709	Phage tail protein RIFT-related domain	Sipho_tail
UHGV-2206273_2	NCBIFam	TIGR01633.1	distal tail protein Dit	NA
UHGV-2206273_2	Structural annotation	PF05709, PF03388, TIGR01633, NF041449, NF033675, COG4722, COG3506	NA	NA
UHGV-2206273_3	PHROG	phrog_588	tail fiber protein and host specificity	tail
UHGV-2206273_3	UniRef90	UniRef90_A0A8E5RWH3	Phage tail protein	NA
UHGV-2206273_3	eggNOG-mapper	146269.A8YQK1_9CAUD	peptidoglycan catabolic process	NA
UHGV-2206273_3	Pfam	PF06605	Prophage endopeptidase tail	Prophage_tail
UHGV-2206273_3	Structural annotation	PF14594, TIGR01665, COG4926	NA	NA
UHGV-2206273_4	PHROG	phrog_4573	NA	unknown function
UHGV-2206273_4	UniRef90	UniRef90_K6SPV0	Putative phage protein	NA
UHGV-2206273_4	eggNOG-mapper	632112.C1KFN3_9CAUD	NA	NA
UHGV-2206273_4	Structural annotation	PF11192	NA	NA
UHGV-2206273_5	PHROG	phrog_1009	NA	unknown function
UHGV-2206273_5	UniRef90	UniRef90_S2NA97	NA	NA
UHGV-2206273_5	eggNOG-mapper	568703.LGG_01141	NA	NA
UHGV-2206273_6	PHROG	phrog_10091	holin	lysis
UHGV-2206273_6	UniRef90	UniRef90_A0A0E2BMM9	Phage holin	NA
UHGV-2206273_6	eggNOG-mapper	543734.LCABL_13460	Bacteriophage holin	NA
UHGV-2206273_6	Pfam	PF04531	Bacteriophage holin	Phage_holin_1
UHGV-2206273_6	NCBIFam	TIGR01598.1	phage holin	NA
UHGV-2206273_6	COG	COG5546	NA	NA
UHGV-2206273_7	PHROG	phrog_918	NA	unknown function
UHGV-2206273_7	UniRef90	UniRef90_UPI0019517842	NA	NA
UHGV-2206273_7	eggNOG-mapper	632112.C1KFI4_9CAUD	NA	NA
UHGV-2206273_7	Pfam	PF19791	NA	DUF6275
UHGV-2206273_7	Structural annotation	PF19791	NA	NA
UHGV-2206273_8	KOfam	K22409	sle1; N-acetylmuramoyl-L-alanine amidase [EC:3.5.1.28]	NA
UHGV-2206273_8	PHROG	phrog_291	endolysin	lysis
UHGV-2206273_8	UniRef90	UniRef90_Q6J1W8	Lysozyme	NA
UHGV-2206273_8	eggNOG-mapper	543734.LCABL_13470	Glycosyl hydrolases family 25	NA
UHGV-2206273_8	Pfam	PF01183	Glycosyl hydrolases family 25	Glyco_hydro_25
UHGV-2206273_8	Pfam	PF08460	Bacterial SH3 domain	SH3_5
UHGV-2206273_8	Pfam	PF01476	LysM domain	LysM
UHGV-2206273_8	COG	COG1388	LysM repeat	NA
UHGV-2206273_8	Structural annotation	PF01476, PF18697, TIGR02899, COG3757, COG1388	NA	NA
UHGV-2206273_9	KOfam	K14059	int; integrase	NA
UHGV-2206273_9	PHROG	phrog_1	integrase	integration and excision
UHGV-2206273_9	UniRef90	UniRef90_B4XYR4	Integrase	NA
UHGV-2206273_9	eggNOG-mapper	1423816.BACQ01000027_gene974	Belongs to the 'phage' integrase family	NA
UHGV-2206273_9	Pfam	PF14657	Arm DNA-binding domain	Arm-DNA-bind_4
UHGV-2206273_9	Pfam	PF00589	Phage integrase family	Phage_integrase
UHGV-2206273_9	COG	COG0582	Integrase/recombinase, includes phage integrase	NA
UHGV-2206273_9	Structural annotation	PF00589, MF_01808, TIGR02224, COG4974	NA	NA
UHGV-2206273_10	PHROG	phrog_4378	NA	unknown function
UHGV-2206273_10	UniRef90	UniRef90_A0A829GRC5	NA	NA
UHGV-2206273_10	eggNOG-mapper	1423732.BALS01000098_gene1435	NA	NA
UHGV-2206273_11	PHROG	phrog_1193	hemolysin	other
UHGV-2206273_13	PHROG	phrog_5319	outer membrane protein	other
UHGV-2206273_13	UniRef90	UniRef90_A0A829GR90	TcdA-E operon negative regulator	NA
UHGV-2206273_13	eggNOG-mapper	1423816.BACQ01000027_gene972	NA	NA
UHGV-2206273_14	KOfam	K01356	lexA; repressor LexA [EC:3.4.21.88]	NA
UHGV-2206273_14	PHROG	phrog_4	transcriptional repressor	transcription regulation
UHGV-2206273_14	UniRef90	UniRef90_A0A510WNV2	HTH cro/C1-type domain-containing protein	NA
UHGV-2206273_14	eggNOG-mapper	51369.O64370_9CAUD	sequence-specific DNA binding	NA
UHGV-2206273_14	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2206273_14	Pfam	PF00717	Peptidase S24-like	Peptidase_S24
UHGV-2206273_14	Structural annotation	PF00717, PF01381, MF_00015, TIGR00498, COG2932	NA	NA
UHGV-2206273_15	PHROG	phrog_3	transcriptional repressor	transcription regulation
UHGV-2206273_15	UniRef90	UniRef90_A0A510WQI3	HTH cro/C1-type domain-containing protein	NA
UHGV-2206273_15	eggNOG-mapper	51369.O64369_9CAUD	sequence-specific DNA binding	NA
UHGV-2206273_15	Pfam	PF01381	Helix-turn-helix	HTH_3
UHGV-2206273_15	Structural annotation	PF01381, NF041951, COG1476	NA	NA
UHGV-2206273_17	KOfam	K07741	antB; anti-repressor protein	NA
UHGV-2206273_17	PHROG	phrog_63	anti-repressor Ant	transcription regulation
UHGV-2206273_17	UniRef90	UniRef90_A0A0R1EUR0	Phage-related antirepressor	NA
UHGV-2206273_17	eggNOG-mapper	1423816.BACQ01000027_gene970	Phage regulatory protein Rha (Phage_pRha)	NA
UHGV-2206273_17	Pfam	PF09669	Phage regulatory protein Rha (Phage_pRha)	Phage_pRha
UHGV-2206273_17	Pfam	PF03374	Phage antirepressor protein KilAC domain	ANT
UHGV-2206273_17	NCBIFam	TIGR02681.1	phage regulatory protein, Rha family	NA
UHGV-2206273_17	COG	COG3645	Phage antirepressor protein YoqD, KilAC domain	NA
UHGV-2206273_17	Structural annotation	PF03374, PF09669, TIGR02681, COG3645, COG3646	NA	NA
UHGV-2206273_18	PHROG	phrog_22399	NA	unknown function
UHGV-2206273_19	PHROG	phrog_643	transcriptional regulator	transcription regulation
UHGV-2206273_19	UniRef90	UniRef90_A0A6L5AAM7	NA	NA
UHGV-2206273_19	eggNOG-mapper	941770.GL622178_gene373	NA	NA
UHGV-2206273_19	Structural annotation	PF11195	NA	NA
UHGV-2206273_20	PHROG	phrog_750	NA	unknown function
UHGV-2206273_20	eggNOG-mapper	1280.SAXN108_2100	NA	NA
UHGV-2206273_20	Structural annotation	PF03444, COG5045	NA	NA
UHGV-2206273_21	PHROG	phrog_823	NA	unknown function
UHGV-2206273_21	UniRef90	UniRef90_UPI0007E1065E	NA	NA
UHGV-2206273_21	eggNOG-mapper	1231336.L248_1656	NA	NA
UHGV-2206273_21	Pfam	PF05595	NA	DUF771
UHGV-2206273_21	COG	COG4707	Prophage pi2 protein 07	NA
UHGV-2206273_22	PHROG	phrog_25481	NA	unknown function
UHGV-2206273_23	PHROG	phrog_5205	NA	unknown function
UHGV-2206273_24	PHROG	phrog_253	Mu Gam-like end protection	DNA, RNA and nucleotide metabolism
UHGV-2206273_24	UniRef90	UniRef90_UPI000F780CAF	siphovirus Gp157 family protein	NA
UHGV-2206273_24	eggNOG-mapper	1423732.BALS01000058_gene2823	Siphovirus Gp157	NA
UHGV-2206273_24	Pfam	PF05565	Siphovirus Gp157	Sipho_Gp157
UHGV-2206273_24	Structural annotation	PF05565, NF002139	NA	NA
UHGV-2206273_25	PHROG	phrog_124	Sak4-like ssDNA annealing protein	DNA, RNA and nucleotide metabolism
UHGV-2206273_25	UniRef90	UniRef90_A8YQL5	Putative NTP-binding protein	NA
UHGV-2206273_25	eggNOG-mapper	1423816.BACQ01000027_gene966	AAA domain	NA
UHGV-2206273_25	Pfam	PF13479	AAA domain	AAA_24
UHGV-2206273_25	NCBIFam	TIGR01618.1	phage nucleotide-binding protein	NA
UHGV-2206273_25	Structural annotation	PF13479, MF_00350, TIGR01618, COG1066	NA	NA
UHGV-2206273_26	PHROG	phrog_378	single strand DNA binding protein	DNA, RNA and nucleotide metabolism
UHGV-2206273_26	UniRef90	UniRef90_A8YQL6	Putative single-stranded binding protein	NA
UHGV-2206273_26	eggNOG-mapper	146269.A8YQL6_9CAUD	NA	NA
UHGV-2206273_26	Pfam	PF05037	NA	DUF669
UHGV-2206273_26	Structural annotation	PF05037, NF004948	NA	NA
UHGV-2206273_27	PHROG	phrog_270	replication initiation protein	DNA, RNA and nucleotide metabolism
UHGV-2206273_27	UniRef90	UniRef90_UPI001F51311C	helix-turn-helix domain-containing protein	NA
UHGV-2206273_27	eggNOG-mapper	39103.U5U793_9CAUD	calcium ion binding	NA
UHGV-2206273_27	Pfam	PF13730	Helix-turn-helix domain	HTH_36
UHGV-2206273_28	KOfam	K02314	dnaB; replicative DNA helicase [EC:5.6.2.3]	NA
UHGV-2206273_28	PHROG	phrog_19	DnaB-like replicative helicase	DNA, RNA and nucleotide metabolism
UHGV-2206273_28	UniRef90	UniRef90_K6RRD1	Replicative DNA helicase	NA
UHGV-2206273_28	eggNOG-mapper	146269.A8YQM1_9CAUD	DNA helicase activity	NA
UHGV-2206273_28	Pfam	PF03796	DnaB-like helicase C terminal domain	DnaB_C
UHGV-2206273_28	Structural annotation	PF03796, PF00772, MF_04155, TIGR00665, COG0305	NA	NA
UHGV-2206273_29	PHROG	phrog_8182	NA	unknown function
UHGV-2206273_29	UniRef90	UniRef90_A0A0N7IR79	Helicase IV	NA
UHGV-2206273_30	KOfam	K01160	rusA; crossover junction endodeoxyribonuclease RusA [EC:3.1.21.10]	NA
UHGV-2206273_30	PHROG	phrog_140	RusA-like Holliday junction resolvase	DNA, RNA and nucleotide metabolism
UHGV-2206273_30	UniRef90	UniRef90_A0A853KJH5	Holliday junction resolvase	NA
UHGV-2206273_30	eggNOG-mapper	568703.LGG_01112	Endodeoxyribonuclease RusA	NA
UHGV-2206273_30	Pfam	PF05866	Endodeoxyribonuclease RusA	RusA
UHGV-2206273_30	COG	COG4570	Holliday junction resolvase RusA (prophage-encoded endonuclease)	NA
UHGV-2206273_30	Structural annotation	PF05866, NF007305, COG4570	NA	NA
UHGV-2206273_31	PHROG	phrog_374	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2206273_31	UniRef90	UniRef90_UPI001CDC4992	alcohol dehydrogenase	NA
UHGV-2206273_31	eggNOG-mapper	1196324.A374_08819	NA	NA
UHGV-2206273_31	Structural annotation	PF00847	NA	NA
UHGV-2206273_32	PHROG	phrog_6766	NA	unknown function
UHGV-2206273_32	UniRef90	UniRef90_A0A180CY61	NA	NA
UHGV-2206273_32	eggNOG-mapper	568703.LGG_01114	NA	NA
UHGV-2206273_33	PHROG	phrog_121	NA	unknown function
UHGV-2206273_33	UniRef90	UniRef90_A0A6L3UKP4	NA	NA
UHGV-2206273_33	eggNOG-mapper	568703.LGG_01115	NA	NA
UHGV-2206273_33	Pfam	PF07852	NA	DUF1642
UHGV-2206273_33	Structural annotation	PF07852	NA	NA
UHGV-2206273_34	PHROG	phrog_3327	NA	unknown function
UHGV-2206273_34	UniRef90	UniRef90_A0A8B5R8K4	NA	NA
UHGV-2206273_34	eggNOG-mapper	632112.C1KFT5_9CAUD	NA	NA
UHGV-2206273_35	PHROG	phrog_3327	NA	unknown function
UHGV-2206273_35	UniRef90	UniRef90_UPI000914D6D7	NA	NA
UHGV-2206273_35	eggNOG-mapper	568703.LGG_01117	NA	NA
UHGV-2206273_36	PHROG	phrog_98	NA	unknown function
UHGV-2206273_36	UniRef90	UniRef90_UPI000398A17D	YopX family protein	NA
UHGV-2206273_36	eggNOG-mapper	1423816.BACQ01000027_gene952	YopX protein	NA
UHGV-2206273_36	Pfam	PF09643	YopX protein	YopX
UHGV-2206273_36	NCBIFam	TIGR01671.1	phage conserved hypothetical protein TIGR01671	NA
UHGV-2206273_36	Structural annotation	PF09643, TIGR01671	NA	NA
UHGV-2206273_37	PHROG	phrog_12280	NA	unknown function
UHGV-2206273_38	PHROG	phrog_8834	NA	unknown function
UHGV-2206273_38	UniRef90	UniRef90_A0A5R8M1R9	Transcriptional regulator	NA
UHGV-2206273_38	eggNOG-mapper	543734.LCABL_05720	NA	NA
UHGV-2206273_38	NCBIFam	TIGR01637.1	ArpU family phage packaging/lysis transcriptional regulator	NA
UHGV-2206273_38	Structural annotation	TIGR01637	NA	NA
UHGV-2206273_39	PHROG	phrog_11507	NA	unknown function
UHGV-2206273_39	UniRef90	UniRef90_A0A1S5WAA0	Putative phage protein	NA
UHGV-2206273_39	eggNOG-mapper	1314.HKU360_00775	NA	NA
UHGV-2206273_41	PHROG	phrog_704	DNA repair exonuclease	DNA, RNA and nucleotide metabolism
UHGV-2206273_41	UniRef90	UniRef90_A0A7Y7QHQ5	Transposase	NA
UHGV-2206273_41	eggNOG-mapper	146269.A8YQN3_9CAUD	NA	NA
UHGV-2206273_41	Pfam	PF07750	GcrA cell cycle regulator	GcrA
UHGV-2206273_41	Structural annotation	PF12850, MF_00905, NF008359, COG2908	NA	NA
UHGV-2206273_42	PHROG	phrog_59	HNH endonuclease	DNA, RNA and nucleotide metabolism
UHGV-2206273_42	UniRef90	UniRef90_A0A3G3LKM7	DNA endonuclease I-HmuI	NA
UHGV-2206273_42	eggNOG-mapper	39103.U5U4N5_9CAUD	HNH endonuclease	NA
UHGV-2206273_42	PADLOC	HEase_00016	homing endonuclease	RM
UHGV-2206273_42	Pfam	PF07463	NUMOD4 motif	NUMOD4
UHGV-2206273_42	Pfam	PF13392	HNH endonuclease	HNH_3
UHGV-2206273_42	Structural annotation	PF07463, PF07453, TIGR01453	NA	NA
UHGV-2206273_43	KOfam	K06191	nrdH; glutaredoxin-like protein NrdH	NA
UHGV-2206273_43	PHROG	phrog_22	thioredoxin domain	DNA, RNA and nucleotide metabolism
UHGV-2206273_43	UniRef90	UniRef90_UPI000FEF1972	ribonucleoside-diphosphate reductase	NA
UHGV-2206273_43	eggNOG-mapper	543734.LCABL_05780	NA	NA
UHGV-2206273_43	Structural annotation	PF13728, MF_01835, NF007657, COG3118	NA	NA
UHGV-2206273_44	PHROG	phrog_10715	hydrolase	other
UHGV-2206273_44	UniRef90	UniRef90_A0A2D1GPN0	Hydrolase activity protein	NA
UHGV-2206273_44	eggNOG-mapper	1423732.BALS01000107_gene440	NA	NA
UHGV-2206273_45	PHROG	phrog_34013	NA	unknown function

All genomes

Genome	vOTU repr.	Length	GC content	CheckV completeness	geNomad score
UHGV-2206273	Yes	28,861 bps	43.96%	71.08%	0.9803
UHGV-1487980	No	21,073 bps	43.47%	51.66%	0.9807
UHGV-0072702	No	20,117 bps	43.35%	49.32%	0.9799
UHGV-1708999	No	20,117 bps	43.35%	49.32%	0.9799